Wall clock time and date at job start Tue Mar 31 2020 06:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86796 * 120.00238 * 2 1 4 4 H 1.48496 * 109.47510 * 239.99720 * 3 2 1 5 5 H 1.48503 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46920 * 119.99364 * 3 2 1 7 7 C 1.38753 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00038 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.34312 * 116.99996 * 180.02562 * 9 7 2 11 11 O 1.21215 * 120.00204 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99905 * 180.02562 * 10 9 7 13 13 O 1.42908 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.42907 * 113.99795 * 179.97438 * 13 12 10 15 15 C 1.50691 * 109.47050 * 179.97438 * 14 13 12 16 16 N 1.27933 * 124.23828 * 89.97425 * 15 14 13 17 17 C 1.34668 * 117.85007 * 180.02562 * 16 15 14 18 18 C 1.40959 * 129.69357 * 179.97438 * 17 16 15 19 19 C 1.36185 * 120.42591 * 180.02562 * 18 17 16 20 20 C 1.38790 * 120.77857 * 0.02562 * 19 18 17 21 21 C 1.37658 * 120.06491 * 359.97438 * 20 19 18 22 22 C 1.39335 * 119.95334 * 0.02562 * 21 20 19 23 23 S 1.70649 * 124.24005 * 270.00419 * 15 14 13 24 24 H 0.96997 * 119.99712 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47797 * 59.99440 * 12 10 9 26 26 H 1.09004 * 109.47181 * 299.99579 * 12 10 9 27 27 H 1.08997 * 109.46792 * 60.00026 * 14 13 12 28 28 H 1.09003 * 109.46775 * 299.99920 * 14 13 12 29 29 H 1.07998 * 119.78913 * 0.02562 * 18 17 16 30 30 H 1.08000 * 119.61107 * 179.72549 * 19 18 17 31 31 H 1.08003 * 119.96538 * 179.97438 * 20 19 18 32 32 H 1.08001 * 120.01878 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.1023 1.6964 -1.2124 5 1 1.2834 2.7464 -0.0006 6 1 3.1021 1.6963 1.2126 7 6 2.0081 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0016 11 8 3.2755 -3.4332 0.0020 12 6 1.3808 -4.8393 0.0011 13 8 2.3651 -5.8754 0.0018 14 6 1.8188 -7.1959 0.0020 15 6 2.9396 -8.2031 0.0022 16 7 3.4753 -8.6838 1.0599 17 6 4.4711 -9.5780 0.9102 18 6 5.2270 -10.2557 1.8880 19 6 6.2029 -11.1316 1.5206 20 6 6.4725 -11.3736 0.1808 21 6 5.7502 -10.7260 -0.7958 22 6 4.7479 -9.8264 -0.4387 23 16 3.6539 -8.8451 -1.4085 24 1 -0.4849 0.8400 -0.0004 25 1 0.7590 -4.9300 -0.8895 26 1 0.7571 -4.9296 0.8904 27 1 1.2055 -7.3355 -0.8882 28 1 1.2047 -7.3349 0.8918 29 1 5.0310 -10.0793 2.9353 30 1 6.7771 -11.6404 2.2808 31 1 7.2498 -12.0706 -0.0957 32 1 5.9609 -10.9145 -1.8382 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007421874.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:49 Heat of formation + Delta-G solvation = -57.674296 kcal Electronic energy + Delta-G solvation = -19324.180518 eV Core-core repulsion = 15956.465721 eV Total energy + Delta-G solvation = -3367.714797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56910 -39.11585 -37.94237 -36.84374 -34.99232 -32.15431 -31.39529 -31.08448 -28.63710 -26.99662 -24.92872 -24.11871 -22.72705 -21.07933 -20.34791 -18.80470 -17.75721 -17.09763 -16.85162 -16.39796 -15.84772 -15.77030 -15.46326 -14.80648 -14.64172 -14.34407 -14.28957 -14.05339 -13.68082 -12.75972 -12.52953 -12.41858 -12.15109 -12.03894 -11.68105 -11.47499 -11.14167 -11.10038 -10.45888 -10.39651 -10.35572 -9.84497 -9.82621 -9.64920 -9.01451 -8.88644 -8.57734 -8.33609 -6.41460 -4.09592 0.13099 0.87547 1.03524 1.53557 2.04736 3.12776 3.13790 3.21416 3.29474 3.49474 3.50606 3.75720 4.15161 4.34719 4.57202 4.68982 4.88348 4.96241 4.99071 5.05798 5.10525 5.22696 5.30112 5.47460 5.59303 5.66467 5.85509 5.92518 6.07995 6.40943 6.51928 7.14365 7.39579 7.42946 7.94817 8.71173 9.07290 9.82636 10.76524 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035103 B = 0.002691 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.460921 B =10402.533284 C =10623.749990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.382 4.382 8 H 0.096 0.904 9 O -0.213 6.213 10 C 0.398 3.602 11 O -0.535 6.535 12 C 0.083 3.917 13 O -0.356 6.356 14 C 0.132 3.868 15 C 0.098 3.902 16 N -0.450 5.450 17 C 0.082 3.918 18 C -0.060 4.060 19 C -0.110 4.110 20 C -0.103 4.103 21 C -0.072 4.072 22 C -0.185 4.185 23 S 0.129 5.871 24 H 0.270 0.730 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 -23.249 -1.168 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.161 4.161 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.458 4.458 8 H 0.114 0.886 9 O -0.121 6.121 10 C 0.243 3.757 11 O -0.430 6.430 12 C 0.005 3.995 13 O -0.274 6.274 14 C 0.052 3.948 15 C -0.186 4.186 16 N -0.165 5.165 17 C -0.039 4.039 18 C -0.081 4.081 19 C -0.131 4.131 20 C -0.125 4.125 21 C -0.094 4.094 22 C -0.305 4.305 23 S 0.386 5.614 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.889 -22.602 -1.731 23.420 hybrid contribution 0.596 0.387 0.717 1.009 sum 6.485 -22.215 -1.014 23.164 Atomic orbital electron populations 1.69982 1.05976 1.27837 1.46590 1.25331 0.95857 0.98794 0.96162 0.85710 0.78597 0.79263 0.79408 1.19447 1.20353 1.19440 1.21188 0.92441 0.79507 1.52632 0.88636 1.83839 1.39098 1.13029 1.76120 1.22587 0.86795 0.86675 0.79613 1.90598 1.15493 1.87740 1.49213 1.21564 0.89995 0.84750 1.03170 1.88039 1.31833 1.11915 1.95612 1.20883 0.89984 0.80861 1.03054 1.26215 1.00887 1.00418 0.91121 1.66144 1.09024 1.09881 1.31410 1.19206 0.95670 0.97083 0.91916 1.20435 0.94200 0.94822 0.98663 1.20734 0.97572 0.98160 0.96612 1.21144 0.99311 0.99443 0.92601 1.20355 0.93824 0.95051 1.00201 1.24008 1.04296 1.05193 0.96962 1.83970 1.29888 1.37523 1.10028 0.91991 0.89764 0.89695 0.90255 0.89453 0.84671 0.84738 0.84748 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.40 13.67 55.48 0.76 -24.64 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 3 Si 0.95 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 7 C -0.38 -11.45 9.65 30.92 0.30 -11.16 16 8 H 0.10 2.90 6.86 -52.48 -0.36 2.54 16 9 O -0.21 -6.14 9.75 -20.71 -0.20 -6.35 16 10 C 0.40 10.18 7.98 36.00 0.29 10.47 16 11 O -0.54 -15.43 15.74 -25.79 -0.41 -15.83 16 12 C 0.08 1.52 6.53 36.00 0.24 1.75 16 13 O -0.36 -6.59 9.86 -55.15 -0.54 -7.14 16 14 C 0.13 1.77 6.49 36.00 0.23 2.01 16 15 C 0.10 1.42 6.92 -13.91 -0.10 1.33 16 16 N -0.45 -7.04 10.57 -9.09 -0.10 -7.14 16 17 C 0.08 1.14 7.00 -84.96 -0.59 0.54 16 18 C -0.06 -0.65 10.05 -39.29 -0.39 -1.05 16 19 C -0.11 -0.89 9.94 -40.12 -0.40 -1.29 16 20 C -0.10 -0.79 10.04 -39.59 -0.40 -1.19 16 21 C -0.07 -0.68 10.07 -39.39 -0.40 -1.07 16 22 C -0.19 -2.30 6.56 -38.55 -0.25 -2.55 16 23 S 0.13 1.58 23.11 -107.50 -2.48 -0.90 16 24 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 310.23 15.07 4.68 4.68 Total: -1.00 -36.98 310.23 -7.77 -44.76 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -2.88 Total: -2.83 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.57 Total: -1.11 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.66 Total: -31.78 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -1.15 Total: -29.32 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.48 Total: -0.90 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.98 -7.77 -44.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007421874.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.918 kcal (2) G-P(sol) polarization free energy of solvation -36.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds