Wall clock time and date at job start Tue Mar 31 2020 06:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86796 * 120.00238 * 2 1 4 4 H 1.48496 * 109.47510 * 239.99720 * 3 2 1 5 5 H 1.48503 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46920 * 119.99364 * 3 2 1 7 7 C 1.38753 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00038 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.34312 * 116.99996 * 180.02562 * 9 7 2 11 11 O 1.21215 * 120.00204 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99905 * 180.02562 * 10 9 7 13 13 O 1.42908 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.42907 * 113.99795 * 179.97438 * 13 12 10 15 15 C 1.50691 * 109.47050 * 179.97438 * 14 13 12 16 16 N 1.27933 * 124.23828 * 89.97425 * 15 14 13 17 17 C 1.34668 * 117.85007 * 180.02562 * 16 15 14 18 18 C 1.40959 * 129.69357 * 179.97438 * 17 16 15 19 19 C 1.36185 * 120.42591 * 180.02562 * 18 17 16 20 20 C 1.38790 * 120.77857 * 0.02562 * 19 18 17 21 21 C 1.37658 * 120.06491 * 359.97438 * 20 19 18 22 22 C 1.39335 * 119.95334 * 0.02562 * 21 20 19 23 23 S 1.70649 * 124.24005 * 270.00419 * 15 14 13 24 24 H 0.96997 * 119.99712 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47797 * 59.99440 * 12 10 9 26 26 H 1.09004 * 109.47181 * 299.99579 * 12 10 9 27 27 H 1.08997 * 109.46792 * 60.00026 * 14 13 12 28 28 H 1.09003 * 109.46775 * 299.99920 * 14 13 12 29 29 H 1.07998 * 119.78913 * 0.02562 * 18 17 16 30 30 H 1.08000 * 119.61107 * 179.72549 * 19 18 17 31 31 H 1.08003 * 119.96538 * 179.97438 * 20 19 18 32 32 H 1.08001 * 120.01878 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.1023 1.6964 -1.2124 5 1 1.2834 2.7464 -0.0006 6 1 3.1021 1.6963 1.2126 7 6 2.0081 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0016 11 8 3.2755 -3.4332 0.0020 12 6 1.3808 -4.8393 0.0011 13 8 2.3651 -5.8754 0.0018 14 6 1.8188 -7.1959 0.0020 15 6 2.9396 -8.2031 0.0022 16 7 3.4753 -8.6838 1.0599 17 6 4.4711 -9.5780 0.9102 18 6 5.2270 -10.2557 1.8880 19 6 6.2029 -11.1316 1.5206 20 6 6.4725 -11.3736 0.1808 21 6 5.7502 -10.7260 -0.7958 22 6 4.7479 -9.8264 -0.4387 23 16 3.6539 -8.8451 -1.4085 24 1 -0.4849 0.8400 -0.0004 25 1 0.7590 -4.9300 -0.8895 26 1 0.7571 -4.9296 0.8904 27 1 1.2055 -7.3355 -0.8882 28 1 1.2047 -7.3349 0.8918 29 1 5.0310 -10.0793 2.9353 30 1 6.7771 -11.6404 2.2808 31 1 7.2498 -12.0706 -0.0957 32 1 5.9609 -10.9145 -1.8382 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007421874.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:48 Heat of formation + Delta-G solvation = -82.765070 kcal Electronic energy + Delta-G solvation = -19325.268535 eV Core-core repulsion = 15956.465721 eV Total energy + Delta-G solvation = -3368.802814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -41.44141 -41.09173 -39.24723 -37.85906 -37.07722 -34.34324 -32.13718 -32.07527 -29.98146 -28.28165 -26.93577 -24.97792 -23.53160 -22.32422 -21.94738 -19.93610 -19.68135 -18.71532 -17.90186 -17.77171 -17.27908 -17.05632 -16.48405 -16.22216 -16.07740 -15.93486 -15.66635 -15.06239 -14.88497 -14.22591 -13.68619 -13.62882 -13.46486 -13.21306 -13.05677 -12.80860 -12.72081 -12.39451 -12.17046 -12.06354 -11.90543 -11.19924 -11.05975 -10.97330 -10.76716 -10.72021 -9.75847 -9.17477 -8.56953 -6.37434 -0.76050 0.12449 0.14932 0.60058 1.12324 1.28003 1.33652 1.48963 1.59738 1.88418 2.29880 2.66721 2.74494 2.93971 3.29316 3.57515 3.83119 4.03728 4.08659 4.11752 4.24207 4.26332 4.29220 4.34007 4.59654 4.61782 4.88380 5.08869 5.12481 5.23250 5.38067 5.75092 5.79019 5.84097 6.48206 6.61425 6.87791 7.69007 8.63225 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035103 B = 0.002691 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.460921 B =10402.533284 C =10623.749990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.000 4.000 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.256 1.256 6 H -0.263 1.263 7 C -0.425 4.425 8 H 0.079 0.921 9 O -0.236 6.236 10 C 0.392 3.608 11 O -0.577 6.577 12 C 0.096 3.904 13 O -0.391 6.391 14 C 0.129 3.871 15 C 0.068 3.932 16 N -0.479 5.479 17 C 0.041 3.959 18 C -0.080 4.080 19 C -0.099 4.099 20 C -0.088 4.088 21 C -0.083 4.083 22 C -0.202 4.202 23 S 0.142 5.858 24 H 0.281 0.719 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.139 0.861 30 H 0.171 0.829 31 H 0.176 0.824 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.932 -24.573 -1.507 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.201 4.201 3 Si 0.836 3.164 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.188 1.188 7 C -0.500 4.500 8 H 0.096 0.904 9 O -0.145 6.145 10 C 0.240 3.760 11 O -0.474 6.474 12 C 0.019 3.981 13 O -0.310 6.310 14 C 0.050 3.950 15 C -0.215 4.215 16 N -0.195 5.195 17 C -0.079 4.079 18 C -0.101 4.101 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.105 4.105 22 C -0.321 4.321 23 S 0.399 5.601 24 H 0.090 0.910 25 H 0.140 0.860 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.120 0.880 29 H 0.157 0.843 30 H 0.189 0.811 31 H 0.193 0.807 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.774 -23.957 -2.070 24.983 hybrid contribution 0.426 0.567 0.849 1.106 sum 7.200 -23.391 -1.221 24.504 Atomic orbital electron populations 1.70049 1.07495 1.29629 1.46409 1.26517 0.96955 1.02136 0.94493 0.84694 0.77656 0.74307 0.79739 1.18636 1.17972 1.18803 1.21365 0.92158 0.80984 1.55526 0.90357 1.83853 1.39835 1.13794 1.76982 1.24063 0.86708 0.88269 0.77010 1.90557 1.17594 1.88504 1.50749 1.21594 0.89266 0.80918 1.06291 1.87972 1.33184 1.13835 1.96029 1.21203 0.90169 0.78161 1.05466 1.26400 1.01900 1.01334 0.91903 1.66124 1.09998 1.10783 1.32622 1.19629 0.96574 0.98248 0.93450 1.20744 0.95071 0.95707 0.98591 1.21217 0.96195 0.96568 0.97980 1.21698 0.98836 0.98473 0.91897 1.20806 0.93163 0.94502 1.02077 1.24301 1.05244 1.06071 0.96435 1.83686 1.29902 1.37409 1.09149 0.90969 0.86008 0.86746 0.86761 0.88039 0.84319 0.81137 0.80654 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.90 13.67 21.62 0.30 -52.60 16 2 C 0.00 -0.02 5.49 84.87 0.47 0.45 16 3 Si 1.02 43.90 29.55 68.60 2.03 45.92 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.42 -26.33 9.65 67.94 0.66 -25.67 16 8 H 0.08 4.98 6.86 -2.91 -0.02 4.96 16 9 O -0.24 -14.04 9.75 14.83 0.14 -13.89 16 10 C 0.39 20.58 7.98 71.23 0.57 21.14 16 11 O -0.58 -34.62 15.74 27.19 0.43 -34.19 16 12 C 0.10 3.47 6.53 71.23 0.47 3.93 16 13 O -0.39 -14.51 9.86 -129.94 -1.28 -15.80 16 14 C 0.13 3.39 6.49 71.23 0.46 3.85 16 15 C 0.07 2.02 6.92 88.67 0.61 2.63 16 16 N -0.48 -15.53 10.57 -182.52 -1.93 -17.46 16 17 C 0.04 1.15 7.00 39.78 0.28 1.43 16 18 C -0.08 -1.69 10.05 22.46 0.23 -1.46 16 19 C -0.10 -1.33 9.94 21.92 0.22 -1.11 16 20 C -0.09 -1.03 10.04 22.26 0.22 -0.81 16 21 C -0.08 -1.38 10.07 22.40 0.23 -1.16 16 22 C -0.20 -4.92 6.56 22.94 0.15 -4.77 16 23 S 0.14 3.49 23.11 -56.49 -1.31 2.19 16 24 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 25 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 26 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 27 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 31 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -84.97 310.23 4.09 -80.88 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.16 Total: 6.49 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 4.55 Total: -1.54 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -1.63 Total: -70.06 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -0.71 Total: -63.88 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.31 Total: 2.19 kcal Total: -84.97 4.09 -80.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007421874.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.887 kcal (2) G-P(sol) polarization free energy of solvation -84.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds