Wall clock time and date at job start Tue Mar 31 2020 06:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.54462 * 2 1 4 4 S 1.81722 * 109.55120 * 120.29363 * 2 1 3 5 5 C 1.76484 * 101.80431 * 164.66911 * 4 2 1 6 6 C 1.38961 * 120.05481 * 149.26971 * 5 4 2 7 7 C 1.37664 * 120.13895 * 180.13312 * 6 5 4 8 8 C 1.39910 * 119.78980 * 0.02562 * 7 6 5 9 9 C 1.47287 * 119.96073 * 179.97438 * 8 7 6 10 10 O 1.21560 * 119.99607 * 179.97438 * 9 8 7 11 11 O 1.34783 * 119.99860 * 0.02562 * 9 8 7 12 12 C 1.34868 * 116.99817 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00114 * 359.97438 * 12 11 9 14 14 C 1.38793 * 119.99883 * 179.97438 * 12 11 9 15 15 N 1.31427 * 119.99798 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99807 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47345 * 89.99857 * 16 14 12 18 18 H 1.48497 * 109.47062 * 209.99881 * 16 14 12 19 19 H 1.48498 * 109.47325 * 330.00051 * 16 14 12 20 20 C 1.39751 * 120.07640 * 359.95059 * 8 7 6 21 21 C 1.38521 * 120.13714 * 359.97438 * 20 8 7 22 22 N 1.39328 * 119.28575 * 180.13978 * 21 20 8 23 23 C 1.33088 * 125.87462 * 202.02523 * 22 21 20 24 24 O 1.21298 * 118.25679 * 179.19404 * 23 22 21 25 25 H 1.09001 * 109.47002 * 180.18899 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.19336 * 1 2 3 27 27 H 1.09000 * 109.47050 * 60.19165 * 1 2 3 28 28 H 1.08000 * 119.92718 * 0.15799 * 6 5 4 29 29 H 1.08000 * 120.10277 * 179.97438 * 7 6 5 30 30 H 0.97001 * 119.99636 * 180.02562 * 15 14 12 31 31 H 1.07997 * 119.92766 * 180.02562 * 20 8 7 32 32 H 0.97001 * 117.06436 * 22.05365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 16 2.1382 -0.8638 1.4786 5 6 3.8290 -1.1486 1.0606 6 6 4.7953 -1.1888 2.0584 7 6 6.1151 -1.4081 1.7339 8 6 6.4811 -1.5899 0.3958 9 6 7.8921 -1.8242 0.0445 10 8 8.2107 -1.9827 -1.1179 11 8 8.8298 -1.8639 1.0118 12 6 10.1023 -2.0827 0.6223 13 1 10.3311 -2.2172 -0.4246 14 6 11.1179 -2.1351 1.5669 15 7 10.8394 -1.9720 2.8409 16 14 12.8805 -2.4375 1.0274 17 1 13.5433 -1.1379 0.7504 18 1 13.6136 -3.1471 2.1063 19 1 12.8858 -3.2680 -0.2037 20 6 5.5092 -1.5499 -0.6076 21 6 4.1810 -1.3308 -0.2812 22 7 3.2264 -1.2973 -1.2955 23 6 2.0332 -0.7122 -1.2245 24 8 1.3137 -0.7550 -2.2001 25 1 -0.3633 -1.0277 0.0034 26 1 -0.3633 0.5168 0.8882 27 1 -0.3633 0.5109 -0.8917 28 1 4.5103 -1.0482 3.0905 29 1 6.8657 -1.4389 2.5098 30 1 11.5492 -2.0083 3.5010 31 1 5.7943 -1.6909 -1.6397 32 1 3.4516 -1.7407 -2.1283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008716453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:12 Heat of formation + Delta-G solvation = -83.921855 kcal Electronic energy + Delta-G solvation = -20100.021172 eV Core-core repulsion = 16731.168196 eV Total energy + Delta-G solvation = -3368.852976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86855 -39.51542 -38.37195 -35.49926 -35.14703 -33.26164 -32.34973 -31.19389 -29.76672 -26.19060 -25.52515 -23.60298 -22.96095 -21.17923 -19.94979 -18.33819 -17.89728 -17.72589 -17.32971 -16.51324 -16.33138 -15.12091 -14.97141 -14.72863 -14.68239 -14.39334 -14.17999 -13.83472 -13.29737 -13.18062 -12.92620 -12.54643 -12.31189 -11.79060 -11.63574 -11.46061 -11.39517 -10.97549 -10.85614 -10.59672 -10.52410 -10.30533 -10.00297 -9.52983 -9.25821 -8.74470 -8.44225 -7.64765 -6.61253 -4.22066 0.55531 1.09848 1.20617 1.90406 2.33938 2.63444 2.99879 3.10379 3.15953 3.22666 3.72813 3.85983 4.08247 4.34986 4.36920 4.63013 4.72666 5.00620 5.21169 5.26942 5.31151 5.35790 5.41539 5.60077 5.74551 5.77356 6.12510 6.29153 6.45023 6.62425 6.79954 6.97550 7.22692 7.57308 7.76251 8.53702 8.87160 9.64537 10.55655 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.039374 B = 0.003420 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.949805 B = 8185.548246 C = 8831.712932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.099 4.099 3 H 0.127 0.873 4 S -0.085 6.085 5 C -0.126 4.126 6 C -0.069 4.069 7 C -0.078 4.078 8 C -0.045 4.045 9 C 0.424 3.576 10 O -0.552 6.552 11 O -0.198 6.198 12 C -0.372 4.372 13 H 0.100 0.900 14 C 0.042 3.958 15 N -0.852 5.852 16 Si 0.947 3.053 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.265 1.265 20 C -0.091 4.091 21 C 0.142 3.858 22 N -0.651 5.651 23 C 0.525 3.475 24 O -0.520 6.520 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.154 0.846 30 H 0.274 0.726 31 H 0.145 0.855 32 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.844 3.424 -0.189 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.230 4.230 3 H 0.145 0.855 4 S 0.156 5.844 5 C -0.241 4.241 6 C -0.091 4.091 7 C -0.098 4.098 8 C -0.049 4.049 9 C 0.272 3.728 10 O -0.451 6.451 11 O -0.105 6.105 12 C -0.447 4.447 13 H 0.118 0.882 14 C -0.163 4.163 15 N -0.488 5.488 16 Si 0.771 3.229 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.113 4.113 21 C 0.042 3.958 22 N -0.295 5.295 23 C 0.310 3.690 24 O -0.396 6.396 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.159 0.841 29 H 0.172 0.828 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.858 3.235 0.392 17.170 hybrid contribution 1.863 -0.019 -1.603 2.458 sum -14.995 3.216 -1.211 15.383 Atomic orbital electron populations 1.21505 0.88329 1.04233 1.03789 1.23482 1.02631 1.03298 0.93597 0.85549 1.85750 1.02947 1.72602 1.23064 1.21528 0.97638 1.10915 0.93979 1.20733 0.91210 0.98851 0.98351 1.21644 0.95974 0.95943 0.96279 1.19265 0.91638 1.00554 0.93428 1.20487 0.86298 0.81284 0.84693 1.90656 1.82281 1.51600 1.20574 1.83887 1.17348 1.72864 1.36370 1.21380 0.78947 1.49014 0.95396 0.88233 1.25425 1.00206 0.96065 0.94653 1.69969 1.34203 1.44124 1.00497 0.85610 0.79621 0.79007 0.78674 1.19670 1.20124 1.18889 1.20831 0.88945 1.00845 1.00671 1.17231 0.88700 1.03009 0.86839 1.43009 1.15089 1.53972 1.17387 1.19873 0.80690 0.78861 0.89577 1.90793 1.53608 1.58958 1.36244 0.90995 0.90523 0.89519 0.84104 0.82821 0.91653 0.83765 0.74734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 8.70 37.16 0.32 -0.66 16 2 C -0.10 -1.01 3.43 -28.06 -0.10 -1.10 16 3 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 4 S -0.08 -0.94 21.64 -107.50 -2.33 -3.27 16 5 C -0.13 -1.69 6.02 -38.69 -0.23 -1.92 16 6 C -0.07 -0.92 9.76 -39.52 -0.39 -1.31 16 7 C -0.08 -1.27 9.61 -39.17 -0.38 -1.65 16 8 C -0.05 -0.85 5.87 -105.03 -0.62 -1.46 16 9 C 0.42 10.20 7.82 34.41 0.27 10.47 16 10 O -0.55 -14.41 15.57 -19.31 -0.30 -14.71 16 11 O -0.20 -5.37 8.97 -21.82 -0.20 -5.57 16 12 C -0.37 -10.46 9.65 30.94 0.30 -10.16 16 13 H 0.10 2.82 6.86 -52.49 -0.36 2.46 16 14 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 15 N -0.85 -23.43 13.67 55.49 0.76 -22.67 16 16 Si 0.95 20.19 29.55 -169.99 -5.02 15.17 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 20 C -0.09 -1.45 9.36 -38.91 -0.36 -1.82 16 21 C 0.14 1.98 6.54 -83.72 -0.55 1.43 16 22 N -0.65 -8.15 5.08 -10.33 -0.05 -8.20 16 23 C 0.53 6.60 7.38 -11.92 -0.09 6.51 16 24 O -0.52 -7.64 16.63 5.54 0.09 -7.54 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.71 7.80 -51.93 -0.41 0.30 16 28 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.15 2.63 7.60 -52.49 -0.40 2.23 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.14 2.25 7.62 -52.49 -0.40 1.85 16 32 H 0.41 4.65 8.58 -40.82 -0.35 4.30 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -31.62 301.31 -7.16 -38.78 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -2.74 Total: 4.11 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.91 Total: -0.63 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.71 Total: -30.87 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.40 Total: -27.83 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.33 Total: -3.27 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.62 -7.16 -38.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008716453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.141 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds