Wall clock time and date at job start Tue Mar 31 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.54462 * 2 1 4 4 S 1.81722 * 109.55120 * 120.29363 * 2 1 3 5 5 C 1.76484 * 101.80431 * 164.66911 * 4 2 1 6 6 C 1.38961 * 120.05481 * 149.26971 * 5 4 2 7 7 C 1.37664 * 120.13895 * 180.13312 * 6 5 4 8 8 C 1.39910 * 119.78980 * 0.02562 * 7 6 5 9 9 C 1.47287 * 119.96073 * 179.97438 * 8 7 6 10 10 O 1.21560 * 119.99607 * 179.97438 * 9 8 7 11 11 O 1.34783 * 119.99860 * 0.02562 * 9 8 7 12 12 C 1.34868 * 116.99817 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00114 * 359.97438 * 12 11 9 14 14 C 1.38793 * 119.99883 * 179.97438 * 12 11 9 15 15 N 1.31427 * 119.99798 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99807 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47345 * 89.99857 * 16 14 12 18 18 H 1.48497 * 109.47062 * 209.99881 * 16 14 12 19 19 H 1.48498 * 109.47325 * 330.00051 * 16 14 12 20 20 C 1.39751 * 120.07640 * 359.95059 * 8 7 6 21 21 C 1.38521 * 120.13714 * 359.97438 * 20 8 7 22 22 N 1.39328 * 119.28575 * 180.13978 * 21 20 8 23 23 C 1.33088 * 125.87462 * 202.02523 * 22 21 20 24 24 O 1.21298 * 118.25679 * 179.19404 * 23 22 21 25 25 H 1.09001 * 109.47002 * 180.18899 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.19336 * 1 2 3 27 27 H 1.09000 * 109.47050 * 60.19165 * 1 2 3 28 28 H 1.08000 * 119.92718 * 0.15799 * 6 5 4 29 29 H 1.08000 * 120.10277 * 179.97438 * 7 6 5 30 30 H 0.97001 * 119.99636 * 180.02562 * 15 14 12 31 31 H 1.07997 * 119.92766 * 180.02562 * 20 8 7 32 32 H 0.97001 * 117.06436 * 22.05365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 16 2.1382 -0.8638 1.4786 5 6 3.8290 -1.1486 1.0606 6 6 4.7953 -1.1888 2.0584 7 6 6.1151 -1.4081 1.7339 8 6 6.4811 -1.5899 0.3958 9 6 7.8921 -1.8242 0.0445 10 8 8.2107 -1.9827 -1.1179 11 8 8.8298 -1.8639 1.0118 12 6 10.1023 -2.0827 0.6223 13 1 10.3311 -2.2172 -0.4246 14 6 11.1179 -2.1351 1.5669 15 7 10.8394 -1.9720 2.8409 16 14 12.8805 -2.4375 1.0274 17 1 13.5433 -1.1379 0.7504 18 1 13.6136 -3.1471 2.1063 19 1 12.8858 -3.2680 -0.2037 20 6 5.5092 -1.5499 -0.6076 21 6 4.1810 -1.3308 -0.2812 22 7 3.2264 -1.2973 -1.2955 23 6 2.0332 -0.7122 -1.2245 24 8 1.3137 -0.7550 -2.2001 25 1 -0.3633 -1.0277 0.0034 26 1 -0.3633 0.5168 0.8882 27 1 -0.3633 0.5109 -0.8917 28 1 4.5103 -1.0482 3.0905 29 1 6.8657 -1.4389 2.5098 30 1 11.5492 -2.0083 3.5010 31 1 5.7943 -1.6909 -1.6397 32 1 3.4516 -1.7407 -2.1283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008716453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:11 Heat of formation + Delta-G solvation = -103.844402 kcal Electronic energy + Delta-G solvation = -20100.885079 eV Core-core repulsion = 16731.168196 eV Total energy + Delta-G solvation = -3369.716883 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.98884 -41.17670 -39.82165 -37.33026 -36.47486 -34.35877 -34.05795 -32.52833 -30.99638 -27.86123 -26.75386 -24.99768 -24.17309 -22.49238 -21.26509 -19.97310 -19.59529 -18.78475 -18.47760 -17.94043 -17.48191 -16.80705 -16.64489 -16.33897 -16.00341 -15.73442 -15.40588 -14.96610 -14.71359 -14.39729 -14.06046 -13.67272 -13.56609 -13.24131 -13.08587 -12.79050 -12.53337 -12.45890 -12.18086 -12.05909 -11.96753 -11.92925 -11.42887 -11.18514 -10.75927 -10.70014 -9.60137 -8.64865 -8.59602 -6.35556 -0.69436 -0.06578 0.13604 0.84830 1.29910 1.34753 1.38186 1.50989 1.59477 1.66656 2.08321 2.53679 2.61421 2.86584 2.99358 3.46714 3.65310 3.91378 3.98111 4.02001 4.10966 4.30680 4.59434 4.71336 4.71991 4.75159 5.02518 5.12956 5.15403 5.24358 5.27672 5.43815 5.76870 5.87713 6.54597 6.55911 6.85035 7.65510 8.60217 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.039374 B = 0.003420 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.949805 B = 8185.548246 C = 8831.712932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 H 0.147 0.853 4 S -0.047 6.047 5 C -0.120 4.120 6 C -0.056 4.056 7 C -0.074 4.074 8 C -0.079 4.079 9 C 0.429 3.571 10 O -0.579 6.579 11 O -0.224 6.224 12 C -0.419 4.419 13 H 0.084 0.916 14 C 0.002 3.998 15 N -0.890 5.890 16 Si 1.017 2.983 17 H -0.260 1.260 18 H -0.258 1.258 19 H -0.264 1.264 20 C -0.084 4.084 21 C 0.150 3.850 22 N -0.650 5.650 23 C 0.523 3.477 24 O -0.541 6.541 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.175 0.825 29 H 0.141 0.859 30 H 0.282 0.718 31 H 0.142 0.858 32 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.902 4.103 0.592 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.232 4.232 3 H 0.164 0.836 4 S 0.195 5.805 5 C -0.235 4.235 6 C -0.078 4.078 7 C -0.095 4.095 8 C -0.083 4.083 9 C 0.279 3.721 10 O -0.479 6.479 11 O -0.131 6.131 12 C -0.495 4.495 13 H 0.101 0.899 14 C -0.200 4.200 15 N -0.527 5.527 16 Si 0.836 3.164 17 H -0.184 1.184 18 H -0.182 1.182 19 H -0.189 1.189 20 C -0.106 4.106 21 C 0.049 3.951 22 N -0.293 5.293 23 C 0.310 3.690 24 O -0.418 6.418 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.192 0.808 29 H 0.159 0.841 30 H 0.092 0.908 31 H 0.160 0.840 32 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -18.960 3.920 1.181 19.397 hybrid contribution 2.130 -0.184 -1.908 2.865 sum -16.830 3.735 -0.727 17.255 Atomic orbital electron populations 1.21555 0.86596 1.04382 1.05094 1.23714 1.03975 1.03733 0.91780 0.83586 1.85748 0.99737 1.72358 1.22684 1.21924 0.99800 1.08212 0.93556 1.20972 0.89597 0.97281 0.99996 1.21547 0.97299 0.95914 0.94786 1.19019 0.88941 1.04927 0.95368 1.21503 0.87962 0.78640 0.84010 1.90607 1.83300 1.52346 1.21695 1.83910 1.17568 1.74395 1.37268 1.21511 0.80159 1.52524 0.95288 0.89855 1.26526 1.04267 0.94753 0.94489 1.70037 1.36002 1.45077 1.01538 0.84629 0.73796 0.79416 0.78591 1.18418 1.18222 1.18862 1.20755 0.89488 1.00421 0.99981 1.17106 0.87993 1.02459 0.87567 1.43040 1.14981 1.53969 1.17305 1.20346 0.80123 0.78405 0.90163 1.90794 1.54006 1.59679 1.37321 0.91457 0.88110 0.89311 0.80778 0.84123 0.90842 0.83989 0.74241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.70 71.98 0.63 -0.87 16 2 C -0.10 -1.68 3.43 29.73 0.10 -1.58 16 3 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 4 S -0.05 -0.86 21.64 -56.49 -1.22 -2.09 16 5 C -0.12 -2.87 6.02 22.85 0.14 -2.73 16 6 C -0.06 -1.37 9.76 22.31 0.22 -1.15 16 7 C -0.07 -2.43 9.61 22.54 0.22 -2.22 16 8 C -0.08 -3.03 5.87 -20.13 -0.12 -3.15 16 9 C 0.43 21.80 7.82 70.20 0.55 22.35 16 10 O -0.58 -31.93 15.57 19.64 0.31 -31.62 16 11 O -0.22 -12.86 8.97 10.68 0.10 -12.77 16 12 C -0.42 -24.88 9.65 67.95 0.66 -24.23 16 13 H 0.08 5.04 6.86 -2.91 -0.02 5.02 16 14 C 0.00 0.08 5.49 84.89 0.47 0.55 16 15 N -0.89 -50.29 13.67 21.63 0.30 -50.00 16 16 Si 1.02 41.97 29.55 68.60 2.03 44.00 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 18 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 19 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 20 C -0.08 -2.70 9.36 22.70 0.21 -2.48 16 21 C 0.15 3.91 6.54 38.42 0.25 4.16 16 22 N -0.65 -15.02 5.08 -305.92 -1.56 -16.58 16 23 C 0.52 11.82 7.38 87.80 0.65 12.47 16 24 O -0.54 -14.77 16.63 -3.09 -0.05 -14.82 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 1.16 7.80 -2.39 -0.02 1.14 16 28 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.14 4.98 7.60 -2.91 -0.02 4.96 16 30 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.14 4.53 7.62 -2.91 -0.02 4.51 16 32 H 0.42 8.90 8.58 -92.71 -0.80 8.10 16 Total: -1.00 -71.48 301.31 4.25 -67.23 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.39 Total: 15.53 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 3.96 Total: 1.11 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.26 Total: -66.58 kcal Atomic # 8 Polarization: -59.56 SS G_CDS: 0.35 Total: -59.21 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -1.22 Total: -2.09 kcal Total: -71.48 4.25 -67.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008716453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.617 kcal (2) G-P(sol) polarization free energy of solvation -71.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds