Wall clock time and date at job start Tue Mar 31 2020 06:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00006 * 2 1 4 4 H 1.48500 * 109.47425 * 240.00090 * 3 2 1 5 5 H 1.48502 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47198 * 120.00472 * 3 2 1 7 7 C 1.38802 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99908 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99859 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47089 * 180.02562 * 10 9 7 12 12 O 1.21292 * 119.99954 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99878 * 179.97438 * 11 10 9 14 14 C 1.40091 * 119.99736 * 174.91038 * 13 11 10 15 15 C 1.39030 * 119.92942 * 146.65117 * 14 13 11 16 16 C 1.38030 * 120.20910 * 180.02562 * 15 14 13 17 17 C 1.38674 * 119.93739 * 359.97438 * 16 15 14 18 18 N 1.39472 * 133.24582 * 180.02562 * 17 16 15 19 19 H 0.97000 * 125.83141 * 0.02562 * 18 17 16 20 20 C 1.34635 * 108.33544 * 180.02562 * 18 17 16 21 21 O 1.21689 * 125.15528 * 179.97438 * 20 18 17 22 22 N 1.34624 * 109.69376 * 359.97438 * 20 18 17 23 23 H 0.97002 * 125.80305 * 180.02562 * 22 20 18 24 24 C 1.39294 * 108.39892 * 0.02562 * 22 20 18 25 25 C 1.38614 * 133.26666 * 180.32614 * 24 22 20 26 26 H 0.96998 * 120.00114 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47418 * 60.00089 * 10 9 7 28 28 H 1.09001 * 109.46883 * 299.99498 * 10 9 7 29 29 H 0.96999 * 119.99982 * 354.63036 * 13 11 10 30 30 H 1.08003 * 119.89549 * 0.02562 * 15 14 13 31 31 H 1.07993 * 120.02892 * 179.97438 * 16 15 14 32 32 H 1.08001 * 120.09511 * 359.92955 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8442 -6.3432 -0.0018 14 6 2.3566 -7.6521 0.1052 15 6 3.0107 -8.6915 -0.5465 16 6 2.5350 -9.9833 -0.4454 17 6 1.4014 -10.2463 0.3088 18 7 0.6948 -11.4138 0.5965 19 1 0.9151 -12.3036 0.2794 20 6 -0.3453 -11.0948 1.3897 21 8 -1.1632 -11.8842 1.8241 22 7 -0.3435 -9.7700 1.6294 23 1 -0.9884 -9.2908 2.1728 24 6 0.7420 -9.2044 0.9644 25 6 1.2255 -7.9091 0.8652 26 1 -0.4850 0.8400 -0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1244 -3.7314 -0.8906 29 1 3.7981 -6.1858 -0.0805 30 1 3.8939 -8.4875 -1.1337 31 1 3.0452 -10.7883 -0.9532 32 1 0.7205 -7.1021 1.3751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032801503.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:23 Heat of formation + Delta-G solvation = -11.204017 kcal Electronic energy + Delta-G solvation = -19587.720814 eV Core-core repulsion = 16254.313870 eV Total energy + Delta-G solvation = -3333.406943 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.59605 -40.11489 -38.16545 -36.31117 -34.36210 -33.86404 -32.49940 -30.45293 -29.69256 -27.69751 -25.55197 -23.53772 -22.69122 -22.61909 -20.47901 -18.86555 -18.23686 -17.80021 -16.72271 -16.55549 -16.43868 -16.30718 -15.33109 -15.14014 -14.86361 -14.47000 -14.19271 -13.94000 -13.49771 -13.31679 -13.15985 -12.64685 -12.26932 -11.80626 -11.53986 -11.26088 -11.11988 -11.08651 -10.88173 -10.83357 -9.91808 -9.82392 -9.61596 -9.12461 -8.53829 -8.35523 -7.79706 -6.59711 -6.28561 -4.00550 0.98234 1.06535 2.28490 2.70713 2.75977 2.79171 3.15000 3.19190 3.24202 3.27457 3.51742 3.57613 4.13228 4.30164 4.78376 4.84615 5.01783 5.02257 5.07015 5.12224 5.41262 5.51004 5.72722 5.78491 5.88861 5.99527 6.03870 6.15325 6.39785 6.64769 6.73054 7.01403 7.38272 7.52715 8.02581 8.27666 8.29357 9.16863 10.78782 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.038090 B = 0.002876 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.931454 B = 9733.536427 C =10356.516390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.155 4.155 11 C 0.532 3.468 12 O -0.495 6.495 13 N -0.678 5.678 14 C 0.172 3.828 15 C -0.136 4.136 16 C -0.084 4.084 17 C 0.063 3.937 18 N -0.642 5.642 19 H 0.433 0.567 20 C 0.685 3.315 21 O -0.563 6.563 22 N -0.639 5.639 23 H 0.437 0.563 24 C 0.113 3.887 25 C -0.111 4.111 26 H 0.270 0.730 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.413 0.587 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.242 -18.777 -0.285 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.367 6.367 13 N -0.325 5.325 14 C 0.075 3.925 15 C -0.159 4.159 16 C -0.106 4.106 17 C -0.039 4.039 18 N -0.289 5.289 19 H 0.275 0.725 20 C 0.385 3.615 21 O -0.439 6.439 22 N -0.285 5.285 23 H 0.279 0.721 24 C 0.009 3.991 25 C -0.134 4.134 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.249 0.751 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.487 -19.455 0.041 20.508 hybrid contribution 2.247 1.252 -0.006 2.573 sum 8.735 -18.203 0.035 20.190 Atomic orbital electron populations 1.69994 1.05977 1.27718 1.46519 1.24994 0.95038 0.99083 0.94401 0.86210 0.79239 0.81147 0.78836 1.19891 1.20788 1.19901 1.22809 0.94892 0.91501 1.59420 0.90843 1.85425 1.04428 0.96398 1.96781 1.23553 1.07034 0.94498 1.05432 1.20578 0.86509 0.86332 0.74671 1.90729 1.15224 1.85206 1.45514 1.43696 1.11071 1.03477 1.74290 1.17265 0.95043 0.84504 0.95677 1.20620 1.02521 0.91092 1.01624 1.19778 0.94193 0.97078 0.99504 1.17982 0.97385 0.84899 1.03595 1.42881 1.27003 1.09745 1.49227 0.72536 1.15918 0.82390 0.82376 0.80857 1.91101 1.42112 1.52274 1.58445 1.42950 1.28194 1.07779 1.49604 0.72103 1.17722 0.90079 0.93517 0.97733 1.20037 0.98323 0.93786 1.01295 0.92028 0.88634 0.88745 0.75109 0.84471 0.84757 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.39 13.22 55.49 0.73 -24.66 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -14.64 9.50 30.94 0.29 -14.35 16 8 H 0.07 1.87 7.80 -52.48 -0.41 1.47 16 9 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16 10 C -0.15 -2.78 6.16 36.01 0.22 -2.56 16 11 C 0.53 8.69 7.58 -10.98 -0.08 8.61 16 12 O -0.49 -9.95 13.56 5.55 0.08 -9.88 16 13 N -0.68 -7.74 5.35 -9.83 -0.05 -7.79 16 14 C 0.17 1.93 6.28 -83.63 -0.52 1.41 16 15 C -0.14 -1.12 9.95 -39.36 -0.39 -1.52 16 16 C -0.08 -0.64 10.06 -39.50 -0.40 -1.04 16 17 C 0.06 0.62 7.26 -83.70 -0.61 0.01 16 18 N -0.64 -6.03 6.16 -14.25 -0.09 -6.12 16 19 H 0.43 2.78 8.96 -40.82 -0.37 2.41 16 20 C 0.68 8.52 9.21 -87.18 -0.80 7.72 16 21 O -0.56 -8.82 18.05 5.20 0.09 -8.73 16 22 N -0.64 -7.21 6.15 -14.31 -0.09 -7.30 16 23 H 0.44 4.17 8.96 -40.82 -0.37 3.81 16 24 C 0.11 1.30 7.25 -83.81 -0.61 0.70 16 25 C -0.11 -1.40 8.67 -39.28 -0.34 -1.74 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.10 1.56 8.14 -51.92 -0.42 1.13 16 28 H 0.09 1.54 8.14 -51.92 -0.42 1.11 16 29 H 0.41 3.19 8.82 -40.82 -0.36 2.83 16 30 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.15 2.14 6.42 -52.49 -0.34 1.80 16 LS Contribution 303.01 15.07 4.57 4.57 Total: -1.00 -35.65 303.01 -7.99 -43.64 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -2.66 Total: 5.04 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.34 Total: -0.80 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.51 Total: -45.87 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.17 Total: -18.61 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.65 -7.99 -43.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032801503.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.440 kcal (2) G-P(sol) polarization free energy of solvation -35.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds