Wall clock time and date at job start Tue Mar 31 2020 06:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46985 * 252.33064 * 3 2 1 5 5 C 1.33326 * 120.00152 * 270.60270 * 4 3 2 6 6 H 1.07998 * 119.99970 * 193.70436 * 5 4 3 7 7 C 1.46786 * 119.99594 * 13.69628 * 5 4 3 8 8 N 1.29317 * 120.00442 * 9.80763 * 7 5 4 9 9 Si 1.86798 * 119.99770 * 189.80838 * 7 5 4 10 10 H 1.48503 * 109.47478 * 60.00110 * 9 7 5 11 11 H 1.48501 * 109.47260 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47266 * 300.00138 * 9 7 5 13 13 C 1.34776 * 119.99994 * 90.59687 * 4 3 2 14 14 O 1.21493 * 120.00180 * 4.67789 * 13 4 3 15 15 C 1.47541 * 119.99961 * 184.67514 * 13 4 3 16 16 C 1.39755 * 120.16979 * 52.69666 * 15 13 4 17 17 C 1.37829 * 119.86582 * 179.76395 * 16 15 13 18 18 N 1.48017 * 119.88272 * 180.23044 * 17 16 15 19 19 O 1.31703 * 119.99702 * 180.28312 * 18 17 16 20 20 O 1.31691 * 120.00455 * 0.28086 * 18 17 16 21 21 C 1.38493 * 120.22722 * 0.51686 * 17 16 15 22 22 C 1.38210 * 120.35860 * 359.73648 * 21 17 16 23 23 C 1.38307 * 120.12603 * 0.02562 * 22 21 17 24 24 F 1.35103 * 120.11738 * 179.97438 * 23 22 21 25 25 H 1.08998 * 109.46935 * 132.32962 * 3 2 1 26 26 H 1.09001 * 109.46712 * 12.33030 * 3 2 1 27 27 H 0.96992 * 120.00096 * 180.02562 * 8 7 5 28 28 H 1.07995 * 120.07243 * 0.02562 * 16 15 13 29 29 H 1.07997 * 119.81923 * 179.72227 * 21 17 16 30 30 H 1.08002 * 119.93946 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0962 0.4201 1.3160 5 6 3.3063 1.7123 1.5683 6 1 3.8673 2.0075 2.4427 7 6 2.7755 2.7336 0.6575 8 7 1.9489 2.3984 -0.2788 9 14 3.2939 4.5178 0.8508 10 1 4.7665 4.6255 0.6915 11 1 2.6219 5.3436 -0.1843 12 1 2.9053 5.0029 2.1996 13 6 3.3327 -0.5003 2.2718 14 8 3.2229 -1.6830 2.0166 15 6 3.7248 -0.0714 3.6279 16 6 2.9503 0.8631 4.3205 17 6 3.3198 1.2557 5.5890 18 7 2.4968 2.2416 6.3249 19 8 2.8509 2.6225 7.5350 20 8 1.4107 2.7381 5.7698 21 6 4.4615 0.7352 6.1751 22 6 5.2373 -0.1857 5.4965 23 6 4.8776 -0.5936 4.2249 24 9 5.6363 -1.4934 3.5615 25 1 2.9711 0.6928 -0.7597 26 1 2.9718 -1.0032 -0.2195 27 1 1.5984 3.0733 -0.8809 28 1 2.0616 1.2738 3.8645 29 1 4.7474 1.0507 7.1676 30 1 6.1266 -0.5869 5.9598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037286070.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:46 Heat of formation + Delta-G solvation = 24.420004 kcal Electronic energy + Delta-G solvation = -23058.377514 eV Core-core repulsion = 19160.302168 eV Total energy + Delta-G solvation = -3898.075346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.064 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -49.01097 -40.25172 -39.02366 -37.70077 -35.85611 -34.67903 -34.25812 -32.46990 -31.65732 -31.39319 -27.90354 -26.33978 -25.20796 -23.66698 -22.36631 -20.18750 -19.07625 -18.11079 -17.82020 -17.61695 -16.64400 -16.52081 -16.22915 -15.87067 -15.53069 -14.93427 -14.86064 -14.28571 -13.92736 -13.42918 -13.41813 -13.15396 -12.94941 -12.59154 -12.20755 -11.77256 -11.69995 -11.49345 -11.44517 -11.15586 -10.98951 -10.93954 -10.74018 -10.55248 -10.51623 -9.74161 -9.41753 -9.27748 -8.94627 -8.74523 -7.05741 -4.26144 -0.59053 0.72266 1.06382 1.24715 2.75567 2.92943 2.95058 2.98958 3.43301 3.46949 3.74231 3.91215 4.01767 4.26815 4.33931 4.41929 4.58791 4.74992 5.01227 5.19038 5.31687 5.54530 5.64658 5.74646 5.88792 5.93064 6.20941 6.40893 6.44231 6.70611 6.91435 6.94519 7.78169 8.34567 8.70994 8.87604 9.34398 9.91570 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.007495 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.273064 B = 3734.948733 C = 4801.684486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.257 3.743 3 C 0.222 3.778 4 N -0.389 5.389 5 C -0.384 4.384 6 H 0.109 0.891 7 C 0.057 3.943 8 N -0.823 5.823 9 Si 0.930 3.070 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.262 1.262 13 C 0.463 3.537 14 O -0.588 6.588 15 C -0.106 4.106 16 C 0.024 3.976 17 C -0.029 4.029 18 N -0.011 5.011 19 O -0.186 6.186 20 O -0.165 6.165 21 C -0.032 4.032 22 C -0.159 4.159 23 C 0.181 3.819 24 F -0.108 7.108 25 H 0.137 0.863 26 H 0.096 0.904 27 H 0.291 0.709 28 H 0.173 0.827 29 H 0.161 0.839 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.615 -0.469 5.581 10.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.157 5.157 2 C -0.061 4.061 3 C 0.096 3.904 4 N -0.103 5.103 5 C -0.511 4.511 6 H 0.126 0.874 7 C -0.159 4.159 8 N -0.455 5.455 9 Si 0.754 3.246 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.187 1.187 13 C 0.253 3.747 14 O -0.475 6.475 15 C -0.111 4.111 16 C 0.004 3.996 17 C -0.116 4.116 18 N 0.467 4.533 19 O -0.377 6.377 20 O -0.360 6.360 21 C -0.051 4.051 22 C -0.178 4.178 23 C 0.159 3.841 24 F -0.086 7.086 25 H 0.154 0.846 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.190 0.810 29 H 0.178 0.822 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.129 -1.384 4.871 8.745 hybrid contribution 0.461 1.321 0.170 1.409 sum 7.591 -0.064 5.041 9.112 Atomic orbital electron populations 1.80905 1.13505 1.12966 1.08280 1.29006 0.95073 0.89462 0.92603 1.18822 0.81813 1.01966 0.87821 1.42452 1.52174 1.06727 1.08947 1.20566 1.37333 0.80355 1.12870 0.87376 1.26874 0.93296 1.01310 0.94389 1.68795 1.23480 1.37496 1.15706 0.85899 0.79586 0.79594 0.79526 1.18866 1.20064 1.18682 1.17235 0.88097 0.85932 0.83449 1.90694 1.60100 1.16118 1.80628 1.20032 0.94992 0.98010 0.98067 1.21258 0.99252 0.89746 0.89363 1.20205 0.96861 0.99691 0.94801 1.50364 1.01367 0.99710 1.01877 1.96230 1.76466 1.65356 0.99623 1.96324 1.11095 1.58420 1.70185 1.20834 0.90451 0.93090 1.00770 1.20980 1.02761 1.00544 0.93545 1.18029 0.88150 0.87595 0.90298 1.91594 1.73385 1.63567 1.80076 0.84607 0.88635 0.89556 0.80991 0.82166 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.45 18.54 42.16 0.78 -10.67 16 2 C 0.26 5.75 13.47 -20.76 -0.28 5.47 16 3 C 0.22 4.47 5.21 -6.83 -0.04 4.43 16 4 N -0.39 -8.30 2.49 -117.56 -0.29 -8.59 16 5 C -0.38 -8.11 8.46 -13.45 -0.11 -8.22 16 6 H 0.11 2.20 5.98 -52.49 -0.31 1.89 16 7 C 0.06 1.20 5.36 -15.16 -0.08 1.11 16 8 N -0.82 -17.80 8.59 56.00 0.48 -17.32 16 9 Si 0.93 16.93 29.65 -169.99 -5.04 11.89 16 10 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 11 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 12 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 13 C 0.46 9.88 6.85 -12.47 -0.09 9.79 16 14 O -0.59 -13.93 16.35 5.37 0.09 -13.85 16 15 C -0.11 -1.91 4.71 -104.91 -0.49 -2.40 16 16 C 0.02 0.41 7.42 -39.16 -0.29 0.12 16 17 C -0.03 -0.45 6.88 -80.00 -0.55 -1.00 16 18 N -0.01 -0.19 4.98 33.94 0.17 -0.02 16 19 O -0.19 -3.16 19.14 -31.57 -0.60 -3.77 16 20 O -0.17 -3.22 19.14 -31.56 -0.60 -3.82 16 21 C -0.03 -0.38 9.57 -39.50 -0.38 -0.76 16 22 C -0.16 -1.80 10.01 -39.57 -0.40 -2.19 16 23 C 0.18 2.76 7.27 -38.93 -0.28 2.47 16 24 F -0.11 -1.75 16.63 2.25 0.04 -1.72 16 25 H 0.14 2.64 6.20 -51.93 -0.32 2.32 16 26 H 0.10 1.78 7.34 -51.93 -0.38 1.40 16 27 H 0.29 6.05 8.26 -40.82 -0.34 5.71 16 28 H 0.17 3.25 7.10 -52.49 -0.37 2.88 16 29 H 0.16 1.50 7.56 -52.49 -0.40 1.11 16 30 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 292.57 15.07 4.41 4.41 Total: -1.00 -27.14 292.57 -4.91 -32.05 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -1.34 Total: 2.57 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -2.99 Total: 8.84 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 1.14 Total: -36.60 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.12 Total: -21.44 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.04 Total: 11.89 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.14 -4.91 -32.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037286070.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.465 kcal (2) G-P(sol) polarization free energy of solvation -27.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds