Wall clock time and date at job start Tue Mar 31 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86793 * 120.00450 * 2 1 4 4 H 1.48506 * 109.47283 * 239.99834 * 3 2 1 5 5 H 1.48499 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47547 * 119.99991 * 3 2 1 7 7 C 1.38622 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00383 * 180.02562 * 7 2 1 9 9 O 1.34809 * 120.00389 * 0.02562 * 7 2 1 10 10 C 1.35796 * 117.00833 * 185.05605 * 9 7 2 11 11 C 1.38893 * 119.99965 * 174.73324 * 10 9 7 12 12 C 1.38014 * 120.00778 * 180.23531 * 11 10 9 13 13 C 1.38943 * 119.99201 * 359.49313 * 12 11 10 14 14 N 1.39777 * 120.00781 * 180.27893 * 13 12 11 15 15 C 1.46505 * 120.00307 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47040 * 179.97438 * 15 14 13 17 17 C 1.34491 * 125.77646 * 90.00033 * 16 15 14 18 18 C 1.41400 * 106.85381 * 180.02562 * 17 16 15 19 19 C 1.34652 * 106.82430 * 359.97438 * 18 17 16 20 20 Cl 1.73611 * 125.79773 * 180.02562 * 19 18 17 21 21 O 1.34293 * 108.40164 * 359.74008 * 19 18 17 22 22 C 1.38954 * 119.98932 * 0.25430 * 13 12 11 23 23 C 1.38011 * 119.99424 * 359.97438 * 22 13 12 24 24 H 0.97008 * 119.99295 * 0.02562 * 1 2 3 25 25 H 1.08008 * 119.99862 * 0.02562 * 11 10 9 26 26 H 1.08000 * 120.00120 * 179.76863 * 12 11 10 27 27 H 0.97000 * 119.99703 * 359.97438 * 14 13 12 28 28 H 1.08997 * 109.46630 * 299.99316 * 15 14 13 29 29 H 1.08999 * 109.47123 * 59.99416 * 15 14 13 30 30 H 1.08002 * 126.57518 * 359.97438 * 17 16 15 31 31 H 1.08000 * 126.58965 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.00520 * 180.02562 * 22 13 12 33 33 H 1.07991 * 119.99821 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.1037 1.6962 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1037 1.6963 1.2125 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3680 0.0005 10 6 2.0701 -3.5046 0.1077 11 6 1.4349 -4.7343 0.2243 12 6 2.1820 -5.8891 0.3381 13 6 3.5698 -5.8225 0.3254 14 7 4.3268 -6.9925 0.4348 15 6 5.7901 -6.9221 0.4220 16 6 6.3610 -8.3107 0.5538 17 6 6.6543 -9.1400 -0.4635 18 6 7.1623 -10.3285 0.1099 19 6 7.1493 -10.1536 1.4450 20 17 7.6727 -11.3133 2.6262 21 8 6.6687 -8.9274 1.7072 22 6 4.2051 -4.5928 0.2035 23 6 3.4575 -3.4378 0.0945 24 1 -0.4849 0.8402 -0.0004 25 1 0.3561 -4.7865 0.2293 26 1 1.6880 -6.8448 0.4325 27 1 3.8832 -7.8509 0.5200 28 1 6.1243 -6.4791 -0.5161 29 1 6.1317 -6.3085 1.2556 30 1 6.5257 -8.9374 -1.5165 31 1 7.4972 -11.2074 -0.4209 32 1 5.2838 -4.5408 0.1932 33 1 3.9511 -2.4821 -0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037503889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:18 Heat of formation + Delta-G solvation = 23.209177 kcal Electronic energy + Delta-G solvation = -19341.086188 eV Core-core repulsion = 15974.835056 eV Total energy + Delta-G solvation = -3366.251133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.03882 -39.06008 -37.41243 -37.14775 -34.77348 -33.44377 -32.12569 -30.61415 -30.17190 -27.50021 -25.42145 -24.93033 -22.37191 -22.08997 -20.98469 -20.56882 -18.29317 -17.88440 -17.31177 -16.74757 -15.98834 -15.50157 -14.87704 -14.47343 -14.19292 -14.01739 -13.74354 -13.51020 -13.34191 -13.24821 -12.78212 -12.66549 -12.45538 -12.32176 -11.70280 -11.57873 -11.48870 -11.34195 -10.94147 -10.63842 -10.39222 -10.36549 -9.28611 -9.22813 -8.83725 -8.48981 -8.20534 -6.47104 -6.33720 -3.91099 0.80518 1.07759 2.06767 2.17292 2.52535 2.99408 3.18248 3.19391 3.22028 3.86638 4.05239 4.38296 4.50555 4.64976 5.11456 5.13361 5.18912 5.26084 5.39854 5.45980 5.48011 5.62304 5.72781 5.96693 6.17467 6.24085 6.40724 6.56504 6.78537 6.93997 7.05473 7.31041 7.41579 7.55840 7.88457 8.09868 8.13501 9.12119 9.85859 10.84913 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.002419 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.718550 B =11570.987412 C =11857.662561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.036 3.964 3 Si 0.938 3.062 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.388 4.388 8 H 0.088 0.912 9 O -0.187 6.187 10 C 0.116 3.884 11 C -0.149 4.149 12 C -0.138 4.138 13 C 0.120 3.880 14 N -0.758 5.758 15 C 0.215 3.785 16 C -0.002 4.002 17 C -0.184 4.184 18 C -0.176 4.176 19 C 0.023 3.977 20 Cl 0.023 6.977 21 O -0.163 6.163 22 C -0.142 4.142 23 C -0.192 4.192 24 H 0.268 0.732 25 H 0.118 0.882 26 H 0.111 0.889 27 H 0.394 0.606 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.107 0.893 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.677 -19.148 0.790 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.167 4.167 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.105 0.895 9 O -0.091 6.091 10 C 0.063 3.937 11 C -0.169 4.169 12 C -0.160 4.160 13 C 0.023 3.977 14 N -0.396 5.396 15 C 0.090 3.910 16 C -0.053 4.053 17 C -0.204 4.204 18 C -0.196 4.196 19 C -0.053 4.053 20 Cl 0.052 6.948 21 O -0.061 6.061 22 C -0.165 4.165 23 C -0.212 4.212 24 H 0.078 0.922 25 H 0.136 0.864 26 H 0.129 0.871 27 H 0.228 0.772 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.125 0.875 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.429 -18.798 1.157 23.725 hybrid contribution 0.557 0.184 0.126 0.600 sum 14.986 -18.613 1.283 23.931 Atomic orbital electron populations 1.70042 1.05854 1.27429 1.47119 1.25222 0.95808 0.98643 0.96996 0.85831 0.78668 0.80153 0.79026 1.19663 1.20417 1.19660 1.21190 0.91568 0.81088 1.52618 0.89457 1.83984 1.33849 1.11139 1.80178 1.19256 0.90171 0.88245 0.96036 1.20013 0.99352 0.89876 1.07654 1.20111 0.91312 0.97430 1.07188 1.17323 0.90229 0.85795 1.04377 1.44137 1.02343 1.06671 1.86408 1.19512 0.82089 0.86675 1.02701 1.22599 1.03885 0.96812 0.81996 1.21688 1.04741 0.93230 1.00699 1.21571 1.06082 1.01056 0.90900 1.22466 1.07132 0.85227 0.90498 1.98435 1.87777 1.50217 1.58404 1.83976 1.63439 1.24082 1.34561 1.20281 0.98250 0.91014 1.06917 1.20998 0.93716 0.98342 1.08127 0.92214 0.86354 0.87098 0.77213 0.89253 0.90959 0.82136 0.82209 0.87492 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.83 13.67 55.48 0.76 -25.07 16 2 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 3 Si 0.94 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.39 -10.93 9.48 30.87 0.29 -10.64 16 8 H 0.09 2.26 5.20 -52.48 -0.27 1.99 16 9 O -0.19 -5.37 9.75 -0.04 0.00 -5.37 16 10 C 0.12 2.79 6.65 -39.09 -0.26 2.53 16 11 C -0.15 -3.12 9.98 -39.42 -0.39 -3.52 16 12 C -0.14 -2.43 9.89 -39.40 -0.39 -2.82 16 13 C 0.12 1.99 6.66 -83.71 -0.56 1.44 16 14 N -0.76 -9.86 5.73 -59.75 -0.34 -10.20 16 15 C 0.21 2.34 5.44 -5.19 -0.03 2.31 16 16 C 0.00 -0.02 6.69 -35.63 -0.24 -0.26 16 17 C -0.18 -1.65 10.81 -39.70 -0.43 -2.08 16 18 C -0.18 -1.52 10.88 -39.65 -0.43 -1.95 16 19 C 0.02 0.23 7.93 29.46 0.23 0.47 16 20 Cl 0.02 0.19 29.30 -51.86 -1.52 -1.33 16 21 O -0.16 -1.90 10.65 5.57 0.06 -1.84 16 22 C -0.14 -2.54 9.30 -39.40 -0.37 -2.91 16 23 C -0.19 -4.11 9.16 -39.42 -0.36 -4.48 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 26 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.39 4.68 8.48 -40.82 -0.35 4.34 16 28 H 0.09 0.87 7.95 -51.93 -0.41 0.46 16 29 H 0.07 0.81 7.95 -51.93 -0.41 0.39 16 30 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.11 1.60 6.73 -52.49 -0.35 1.25 16 33 H 0.13 2.74 5.63 -52.49 -0.30 2.44 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -31.17 310.82 -7.33 -38.49 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -2.92 Total: 5.88 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -3.02 Total: -20.99 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.42 Total: -35.27 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: 0.06 Total: -7.21 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -1.52 Total: -1.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.17 -7.33 -38.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037503889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.703 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds