Wall clock time and date at job start Tue Mar 31 2020 06:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86793 * 120.00450 * 2 1 4 4 H 1.48506 * 109.47283 * 239.99834 * 3 2 1 5 5 H 1.48499 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47547 * 119.99991 * 3 2 1 7 7 C 1.38622 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00383 * 180.02562 * 7 2 1 9 9 O 1.34809 * 120.00389 * 0.02562 * 7 2 1 10 10 C 1.35796 * 117.00833 * 185.05605 * 9 7 2 11 11 C 1.38893 * 119.99965 * 174.73324 * 10 9 7 12 12 C 1.38014 * 120.00778 * 180.23531 * 11 10 9 13 13 C 1.38943 * 119.99201 * 359.49313 * 12 11 10 14 14 N 1.39777 * 120.00781 * 180.27893 * 13 12 11 15 15 C 1.46505 * 120.00307 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47040 * 179.97438 * 15 14 13 17 17 C 1.34491 * 125.77646 * 90.00033 * 16 15 14 18 18 C 1.41400 * 106.85381 * 180.02562 * 17 16 15 19 19 C 1.34652 * 106.82430 * 359.97438 * 18 17 16 20 20 Cl 1.73611 * 125.79773 * 180.02562 * 19 18 17 21 21 O 1.34293 * 108.40164 * 359.74008 * 19 18 17 22 22 C 1.38954 * 119.98932 * 0.25430 * 13 12 11 23 23 C 1.38011 * 119.99424 * 359.97438 * 22 13 12 24 24 H 0.97008 * 119.99295 * 0.02562 * 1 2 3 25 25 H 1.08008 * 119.99862 * 0.02562 * 11 10 9 26 26 H 1.08000 * 120.00120 * 179.76863 * 12 11 10 27 27 H 0.97000 * 119.99703 * 359.97438 * 14 13 12 28 28 H 1.08997 * 109.46630 * 299.99316 * 15 14 13 29 29 H 1.08999 * 109.47123 * 59.99416 * 15 14 13 30 30 H 1.08002 * 126.57518 * 359.97438 * 17 16 15 31 31 H 1.08000 * 126.58965 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.00520 * 180.02562 * 22 13 12 33 33 H 1.07991 * 119.99821 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.1037 1.6962 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1037 1.6963 1.2125 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3680 0.0005 10 6 2.0701 -3.5046 0.1077 11 6 1.4349 -4.7343 0.2243 12 6 2.1820 -5.8891 0.3381 13 6 3.5698 -5.8225 0.3254 14 7 4.3268 -6.9925 0.4348 15 6 5.7901 -6.9221 0.4220 16 6 6.3610 -8.3107 0.5538 17 6 6.6543 -9.1400 -0.4635 18 6 7.1623 -10.3285 0.1099 19 6 7.1493 -10.1536 1.4450 20 17 7.6727 -11.3133 2.6262 21 8 6.6687 -8.9274 1.7072 22 6 4.2051 -4.5928 0.2035 23 6 3.4575 -3.4378 0.0945 24 1 -0.4849 0.8402 -0.0004 25 1 0.3561 -4.7865 0.2293 26 1 1.6880 -6.8448 0.4325 27 1 3.8832 -7.8509 0.5200 28 1 6.1243 -6.4791 -0.5161 29 1 6.1317 -6.3085 1.2556 30 1 6.5257 -8.9374 -1.5165 31 1 7.4972 -11.2074 -0.4209 32 1 5.2838 -4.5408 0.1932 33 1 3.9511 -2.4821 -0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037503889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:17 Heat of formation + Delta-G solvation = 3.725549 kcal Electronic energy + Delta-G solvation = -19341.931062 eV Core-core repulsion = 15974.835056 eV Total energy + Delta-G solvation = -3367.096006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.77372 -40.69667 -38.78076 -38.04234 -36.08717 -34.26564 -34.03495 -31.83683 -31.57350 -28.81427 -27.15902 -26.21397 -23.61599 -23.06826 -22.32671 -21.57965 -19.85667 -19.15373 -18.67048 -17.78047 -17.33969 -16.67717 -16.22393 -15.87261 -15.60245 -15.42017 -15.22827 -14.69500 -14.40349 -14.23960 -14.12029 -13.97855 -13.45127 -13.41473 -13.20252 -12.99011 -12.90456 -12.55713 -12.33927 -12.28673 -12.10577 -11.09635 -11.04376 -10.92137 -10.22155 -9.75895 -9.56584 -8.37667 -7.97310 -6.01477 0.12711 0.32602 0.60662 0.93503 1.38112 1.38429 1.49388 1.54316 2.23688 2.24625 2.77157 2.92962 3.27108 3.62661 3.70061 3.86488 4.13333 4.20113 4.31123 4.42236 4.52391 4.59072 4.73651 4.77186 4.84700 4.89987 5.12859 5.26776 5.32132 5.50681 5.54988 5.79892 5.83800 5.95850 6.12781 6.53044 6.92381 7.08092 7.95029 8.86600 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.002419 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.718550 B =11570.987412 C =11857.662561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.029 4.029 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.406 4.406 8 H 0.100 0.900 9 O -0.242 6.242 10 C 0.064 3.936 11 C -0.156 4.156 12 C -0.138 4.138 13 C 0.151 3.849 14 N -0.745 5.745 15 C 0.212 3.788 16 C -0.019 4.019 17 C -0.173 4.173 18 C -0.171 4.171 19 C 0.008 3.992 20 Cl 0.030 6.970 21 O -0.185 6.185 22 C -0.145 4.145 23 C -0.195 4.195 24 H 0.269 0.731 25 H 0.114 0.886 26 H 0.146 0.854 27 H 0.403 0.597 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.181 0.819 31 H 0.184 0.816 32 H 0.142 0.858 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.495 -21.187 0.426 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.225 4.225 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.482 4.482 8 H 0.117 0.883 9 O -0.150 6.150 10 C 0.014 3.986 11 C -0.176 4.176 12 C -0.160 4.160 13 C 0.051 3.949 14 N -0.382 5.382 15 C 0.088 3.912 16 C -0.069 4.069 17 C -0.193 4.193 18 C -0.191 4.191 19 C -0.069 4.069 20 Cl 0.059 6.941 21 O -0.083 6.083 22 C -0.167 4.167 23 C -0.214 4.214 24 H 0.078 0.922 25 H 0.132 0.868 26 H 0.163 0.837 27 H 0.239 0.761 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.199 0.801 31 H 0.201 0.799 32 H 0.160 0.840 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.306 -20.933 0.797 27.172 hybrid contribution -0.138 0.369 0.274 0.480 sum 17.168 -20.564 1.071 26.809 Atomic orbital electron populations 1.70204 1.07972 1.28452 1.50041 1.26532 0.96841 1.02665 0.96497 0.84678 0.77335 0.74552 0.79830 1.18148 1.19941 1.18321 1.21723 0.92375 0.81742 1.52409 0.88308 1.83934 1.35593 1.12334 1.83157 1.19777 0.91580 0.88028 0.99213 1.20225 0.99671 0.90126 1.07535 1.20414 0.91862 0.97562 1.06149 1.17424 0.90242 0.86741 1.00472 1.44229 1.03494 1.05752 1.84686 1.19656 0.80300 0.87489 1.03723 1.22514 1.05289 0.96906 0.82202 1.22001 1.03192 0.92718 1.01393 1.21934 1.05038 1.01717 0.90436 1.22802 1.07603 0.85057 0.91403 1.98437 1.87678 1.49745 1.58284 1.83942 1.64123 1.24889 1.35384 1.20543 0.99818 0.90103 1.06226 1.21070 0.92881 0.99512 1.07982 0.92183 0.86828 0.83658 0.76119 0.87303 0.90895 0.80115 0.79861 0.84038 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.10 13.67 21.61 0.30 -57.81 16 2 C -0.03 -1.69 5.49 84.82 0.47 -1.22 16 3 Si 1.02 43.56 29.55 68.60 2.03 45.59 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.41 -23.96 9.48 67.91 0.64 -23.32 16 8 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 9 O -0.24 -14.80 9.75 -23.04 -0.22 -15.03 16 10 C 0.06 3.18 6.65 22.59 0.15 3.33 16 11 C -0.16 -6.62 9.98 22.37 0.22 -6.40 16 12 C -0.14 -4.55 9.89 22.39 0.22 -4.33 16 13 C 0.15 4.55 6.66 38.21 0.25 4.81 16 14 N -0.75 -16.38 5.73 -342.96 -1.96 -18.34 16 15 C 0.21 3.77 5.44 85.63 0.47 4.24 16 16 C -0.02 -0.33 6.69 24.83 0.17 -0.17 16 17 C -0.17 -2.44 10.81 22.19 0.24 -2.20 16 18 C -0.17 -2.37 10.88 22.23 0.24 -2.13 16 19 C 0.01 0.13 7.93 67.00 0.53 0.66 16 20 Cl 0.03 0.44 29.30 -2.72 -0.08 0.36 16 21 O -0.18 -3.84 10.65 -2.99 -0.03 -3.88 16 22 C -0.14 -4.81 9.30 22.39 0.21 -4.60 16 23 C -0.19 -8.38 9.16 22.38 0.20 -8.17 16 24 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 25 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 26 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 27 H 0.40 7.86 8.48 -92.71 -0.79 7.07 16 28 H 0.11 1.60 7.95 -2.39 -0.02 1.58 16 29 H 0.07 1.35 7.95 -2.39 -0.02 1.33 16 30 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.14 3.69 6.73 -2.91 -0.02 3.67 16 33 H 0.12 5.22 5.63 -2.92 -0.02 5.21 16 Total: -1.00 -72.29 310.82 4.42 -67.87 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.38 Total: 20.71 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 4.02 Total: -39.48 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -1.67 Total: -76.15 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.26 Total: -18.91 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -0.08 Total: 0.36 kcal Total: -72.29 4.42 -67.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037503889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.595 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds