Wall clock time and date at job start Tue Mar 31 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47622 * 25.59046 * 3 2 1 5 5 C 1.33331 * 119.99963 * 273.89079 * 4 3 2 6 6 H 1.08001 * 120.00050 * 148.54850 * 5 4 3 7 7 C 1.46784 * 119.99911 * 328.54516 * 5 4 3 8 8 N 1.29316 * 120.00212 * 156.88136 * 7 5 4 9 9 Si 1.86807 * 119.99954 * 336.87852 * 7 5 4 10 10 H 1.48495 * 109.47125 * 93.49578 * 9 7 5 11 11 H 1.48499 * 109.47007 * 213.49697 * 9 7 5 12 12 H 1.48497 * 109.47268 * 333.49577 * 9 7 5 13 13 C 1.34770 * 119.99816 * 93.88406 * 4 3 2 14 14 O 1.21476 * 119.99920 * 185.00691 * 13 4 3 15 15 C 1.47698 * 120.00343 * 5.00705 * 13 4 3 16 16 C 1.39659 * 120.14263 * 301.33783 * 15 13 4 17 17 C 1.38142 * 119.81907 * 179.97438 * 16 15 13 18 18 F 1.35102 * 119.94934 * 179.97438 * 17 16 15 19 19 C 1.38618 * 120.10099 * 359.73902 * 17 16 15 20 20 C 1.38325 * 120.28228 * 0.51781 * 19 17 16 21 21 C 1.37960 * 120.18136 * 359.48177 * 20 19 17 22 22 N 1.48014 * 120.05222 * 180.23241 * 21 20 19 23 23 O 1.31702 * 120.00118 * 353.75418 * 22 21 20 24 24 O 1.31700 * 120.00050 * 173.74527 * 22 21 20 25 25 H 1.09002 * 109.46756 * 265.58824 * 3 2 1 26 26 H 1.08999 * 109.46819 * 145.59035 * 3 2 1 27 27 H 0.97004 * 120.00260 * 180.02562 * 8 7 5 28 28 H 1.08000 * 120.08533 * 359.94504 * 16 15 13 29 29 H 1.07993 * 119.85868 * 180.25493 * 19 17 16 30 30 H 1.08000 * 119.90917 * 179.76255 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.2448 -0.5966 5 6 3.2459 -2.3327 0.1597 6 1 3.1033 -3.3131 -0.2705 7 6 3.6037 -2.1981 1.5769 8 7 3.3227 -3.1482 2.4078 9 14 4.4649 -0.6540 2.1801 10 1 3.4546 0.3146 2.6761 11 1 5.3965 -1.0053 3.2819 12 1 5.2283 -0.0441 1.0620 13 6 3.3962 -1.2908 -1.9098 14 8 3.7143 -2.3446 -2.4237 15 6 3.3374 -0.0601 -2.7243 16 6 2.1444 0.6592 -2.8230 17 6 2.0970 1.8096 -3.5863 18 9 0.9442 2.5072 -3.6840 19 6 3.2318 2.2521 -4.2480 20 6 4.4143 1.5401 -4.1574 21 6 4.4747 0.3896 -3.3985 22 7 5.7429 -0.3673 -3.2994 23 8 6.7794 -0.0143 -4.0312 24 8 5.8348 -1.3937 -2.4793 25 1 2.9712 0.0799 1.0247 26 1 2.9709 0.8487 -0.5807 27 1 3.5588 -3.0591 3.3445 28 1 1.2611 0.3166 -2.3045 29 1 3.1915 3.1542 -4.8403 30 1 5.2938 1.8882 -4.6786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037669527.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:06 Heat of formation + Delta-G solvation = 44.740522 kcal Electronic energy + Delta-G solvation = -23483.155942 eV Core-core repulsion = 19585.961760 eV Total energy + Delta-G solvation = -3897.194182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.064 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -49.28587 -40.52566 -38.70466 -37.50246 -36.53975 -35.07608 -33.65787 -33.11326 -31.67257 -31.24155 -28.32040 -26.57755 -25.46870 -23.68684 -22.19993 -20.24394 -19.14610 -18.22580 -17.79966 -17.64974 -17.18118 -16.58646 -16.13376 -15.93130 -15.87009 -15.24119 -14.78922 -14.51251 -14.19071 -13.72894 -13.66348 -13.50928 -13.21111 -12.93542 -12.71365 -12.39729 -12.32935 -11.99116 -11.66987 -11.39027 -10.93203 -10.64128 -10.47996 -10.23869 -9.96797 -9.80917 -9.49640 -9.28237 -8.98915 -8.72179 -7.25035 -4.17769 -0.51788 0.59470 1.20233 1.68046 2.51909 2.66568 2.74404 2.79599 2.93282 2.95655 3.29826 3.49701 3.67952 3.91879 4.02564 4.26737 4.40092 4.56458 4.66496 4.75772 5.00119 5.09458 5.24759 5.40580 5.55906 5.60748 5.71821 6.14003 6.45505 6.52019 7.41767 7.53228 7.65668 7.73920 8.23060 8.58193 9.22995 9.78316 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.008032 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.508514 B = 3485.372007 C = 4650.013965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.202 3.798 3 C 0.169 3.831 4 N -0.406 5.406 5 C -0.291 4.291 6 H 0.132 0.868 7 C 0.063 3.937 8 N -0.768 5.768 9 Si 0.866 3.134 10 H -0.258 1.258 11 H -0.266 1.266 12 H -0.243 1.243 13 C 0.467 3.533 14 O -0.512 6.512 15 C -0.024 4.024 16 C -0.151 4.151 17 C 0.146 3.854 18 F -0.125 7.125 19 C -0.166 4.166 20 C -0.021 4.021 21 C 0.004 3.996 22 N -0.021 5.021 23 O -0.251 6.251 24 O -0.119 6.119 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.297 0.703 28 H 0.150 0.850 29 H 0.156 0.844 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 12.589 -4.174 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.117 4.117 3 C 0.043 3.957 4 N -0.124 5.124 5 C -0.421 4.421 6 H 0.149 0.851 7 C -0.159 4.159 8 N -0.396 5.396 9 Si 0.690 3.310 10 H -0.185 1.185 11 H -0.191 1.191 12 H -0.166 1.166 13 C 0.260 3.740 14 O -0.391 6.391 15 C -0.031 4.031 16 C -0.171 4.171 17 C 0.126 3.874 18 F -0.103 7.103 19 C -0.186 4.186 20 C -0.040 4.040 21 C -0.087 4.087 22 N 0.440 4.560 23 O -0.417 6.417 24 O -0.316 6.316 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.110 0.890 28 H 0.168 0.832 29 H 0.174 0.826 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.382 12.298 -4.425 13.285 hybrid contribution 0.919 0.616 0.572 1.245 sum -1.463 12.914 -3.853 13.555 Atomic orbital electron populations 1.81126 1.12583 1.07609 1.08355 1.29551 0.95357 0.93454 0.93353 1.19689 0.82022 0.91213 1.02810 1.42688 1.52145 1.09297 1.08296 1.20577 1.43618 0.88049 0.89835 0.85101 1.27203 0.94988 0.98133 0.95594 1.68668 1.32602 1.33123 1.05176 0.87058 0.81028 0.81970 0.80905 1.18523 1.19094 1.16573 1.17495 0.85454 0.87882 0.83212 1.90735 1.49465 1.29027 1.69885 1.19907 0.91014 0.97094 0.95099 1.21347 0.98519 0.94958 1.02301 1.17741 0.82304 0.90499 0.96855 1.91563 1.46922 1.77538 1.94255 1.21028 0.90758 1.02947 1.03873 1.20768 0.99176 0.90599 0.93459 1.20065 0.83515 0.96747 1.08332 1.50045 1.02729 1.01745 1.01448 1.96179 1.26768 1.74776 1.43979 1.96416 1.91141 1.13494 1.30593 0.87335 0.86738 0.88970 0.83224 0.82649 0.82070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.77 18.54 42.15 0.78 -6.99 16 2 C 0.20 3.53 13.41 -20.76 -0.28 3.25 16 3 C 0.17 2.89 4.45 -6.83 -0.03 2.86 16 4 N -0.41 -8.62 2.23 -117.50 -0.26 -8.89 16 5 C -0.29 -6.96 9.70 -13.45 -0.13 -7.09 16 6 H 0.13 3.54 7.68 -52.49 -0.40 3.14 16 7 C 0.06 1.40 5.51 -15.16 -0.08 1.32 16 8 N -0.77 -17.81 13.88 56.00 0.78 -17.04 16 9 Si 0.87 16.00 25.06 -169.99 -4.26 11.74 16 10 H -0.26 -4.22 6.71 56.52 0.38 -3.84 16 11 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 12 H -0.24 -4.49 7.11 56.52 0.40 -4.09 16 13 C 0.47 10.25 5.46 -12.40 -0.07 10.19 16 14 O -0.51 -13.26 14.65 -18.50 -0.27 -13.53 16 15 C -0.02 -0.43 4.55 -104.97 -0.48 -0.90 16 16 C -0.15 -2.22 7.81 -39.09 -0.31 -2.52 16 17 C 0.15 1.78 7.29 -39.48 -0.29 1.49 16 18 F -0.12 -1.49 17.26 2.25 0.04 -1.45 16 19 C -0.17 -1.70 10.02 -39.41 -0.39 -2.10 16 20 C -0.02 -0.26 9.57 -39.65 -0.38 -0.64 16 21 C 0.00 0.07 6.90 -79.52 -0.55 -0.48 16 22 N -0.02 -0.44 4.98 34.17 0.17 -0.27 16 23 O -0.25 -5.15 19.17 -31.57 -0.61 -5.75 16 24 O -0.12 -2.89 15.69 -39.78 -0.62 -3.51 16 25 H 0.11 1.83 2.39 -51.93 -0.12 1.71 16 26 H 0.11 1.58 5.95 -51.93 -0.31 1.27 16 27 H 0.30 6.14 8.26 -40.82 -0.34 5.80 16 28 H 0.15 2.26 5.83 -52.49 -0.31 1.96 16 29 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 30 H 0.16 1.69 7.59 -52.49 -0.40 1.29 16 LS Contribution 282.80 15.07 4.26 4.26 Total: -1.00 -28.57 282.80 -4.10 -32.66 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -1.12 Total: 3.39 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -2.98 Total: 5.38 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 1.47 Total: -33.18 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.50 Total: -22.80 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 16.00 SS G_CDS: -4.26 Total: 11.74 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.57 -4.10 -32.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037669527.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.405 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds