Wall clock time and date at job start Tue Mar 31 2020 06:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47622 * 25.59046 * 3 2 1 5 5 C 1.33331 * 119.99963 * 273.89079 * 4 3 2 6 6 H 1.08001 * 120.00050 * 148.54850 * 5 4 3 7 7 C 1.46784 * 119.99911 * 328.54516 * 5 4 3 8 8 N 1.29316 * 120.00212 * 156.88136 * 7 5 4 9 9 Si 1.86807 * 119.99954 * 336.87852 * 7 5 4 10 10 H 1.48495 * 109.47125 * 93.49578 * 9 7 5 11 11 H 1.48499 * 109.47007 * 213.49697 * 9 7 5 12 12 H 1.48497 * 109.47268 * 333.49577 * 9 7 5 13 13 C 1.34770 * 119.99816 * 93.88406 * 4 3 2 14 14 O 1.21476 * 119.99920 * 185.00691 * 13 4 3 15 15 C 1.47698 * 120.00343 * 5.00705 * 13 4 3 16 16 C 1.39659 * 120.14263 * 301.33783 * 15 13 4 17 17 C 1.38142 * 119.81907 * 179.97438 * 16 15 13 18 18 F 1.35102 * 119.94934 * 179.97438 * 17 16 15 19 19 C 1.38618 * 120.10099 * 359.73902 * 17 16 15 20 20 C 1.38325 * 120.28228 * 0.51781 * 19 17 16 21 21 C 1.37960 * 120.18136 * 359.48177 * 20 19 17 22 22 N 1.48014 * 120.05222 * 180.23241 * 21 20 19 23 23 O 1.31702 * 120.00118 * 353.75418 * 22 21 20 24 24 O 1.31700 * 120.00050 * 173.74527 * 22 21 20 25 25 H 1.09002 * 109.46756 * 265.58824 * 3 2 1 26 26 H 1.08999 * 109.46819 * 145.59035 * 3 2 1 27 27 H 0.97004 * 120.00260 * 180.02562 * 8 7 5 28 28 H 1.08000 * 120.08533 * 359.94504 * 16 15 13 29 29 H 1.07993 * 119.85868 * 180.25493 * 19 17 16 30 30 H 1.08000 * 119.90917 * 179.76255 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.2448 -0.5966 5 6 3.2459 -2.3327 0.1597 6 1 3.1033 -3.3131 -0.2705 7 6 3.6037 -2.1981 1.5769 8 7 3.3227 -3.1482 2.4078 9 14 4.4649 -0.6540 2.1801 10 1 3.4546 0.3146 2.6761 11 1 5.3965 -1.0053 3.2819 12 1 5.2283 -0.0441 1.0620 13 6 3.3962 -1.2908 -1.9098 14 8 3.7143 -2.3446 -2.4237 15 6 3.3374 -0.0601 -2.7243 16 6 2.1444 0.6592 -2.8230 17 6 2.0970 1.8096 -3.5863 18 9 0.9442 2.5072 -3.6840 19 6 3.2318 2.2521 -4.2480 20 6 4.4143 1.5401 -4.1574 21 6 4.4747 0.3896 -3.3985 22 7 5.7429 -0.3673 -3.2994 23 8 6.7794 -0.0143 -4.0312 24 8 5.8348 -1.3937 -2.4793 25 1 2.9712 0.0799 1.0247 26 1 2.9709 0.8487 -0.5807 27 1 3.5588 -3.0591 3.3445 28 1 1.2611 0.3166 -2.3045 29 1 3.1915 3.1542 -4.8403 30 1 5.2938 1.8882 -4.6786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037669527.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:05 Heat of formation + Delta-G solvation = 25.631713 kcal Electronic energy + Delta-G solvation = -23483.984562 eV Core-core repulsion = 19585.961760 eV Total energy + Delta-G solvation = -3898.022802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.064 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.37197 -42.01317 -40.24187 -39.06850 -38.09495 -36.64259 -35.40039 -34.64148 -32.97714 -32.63885 -29.73103 -28.12563 -27.01384 -25.00558 -23.59455 -21.70436 -20.65080 -19.77207 -19.15198 -19.11277 -18.64896 -17.98872 -17.49017 -17.27484 -17.09244 -16.79821 -16.14605 -16.00995 -15.68520 -15.16430 -14.85364 -14.73645 -14.65588 -14.40059 -14.16056 -13.79969 -13.71882 -13.40580 -12.92385 -12.87307 -12.47430 -12.38962 -12.04303 -11.83520 -11.69187 -11.29770 -10.84407 -10.63851 -10.48964 -10.33219 -8.77124 -6.02700 -1.96407 -0.58332 -0.21634 0.09171 1.07127 1.24024 1.24805 1.35896 1.52536 1.57163 1.88711 2.02590 2.29889 2.55824 2.67537 2.89344 3.04361 3.22531 3.42541 3.52978 3.69532 3.76486 3.92849 4.19680 4.37548 4.48390 4.55957 4.70734 5.04034 5.19829 5.62130 5.92029 6.13960 6.25208 6.68407 6.98883 7.62555 8.35050 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.008032 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.508514 B = 3485.372007 C = 4650.013965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.216 3.784 3 C 0.171 3.829 4 N -0.417 5.417 5 C -0.379 4.379 6 H 0.058 0.942 7 C 0.032 3.968 8 N -0.842 5.842 9 Si 0.918 3.082 10 H -0.216 1.216 11 H -0.268 1.268 12 H -0.243 1.243 13 C 0.473 3.527 14 O -0.568 6.568 15 C -0.026 4.026 16 C -0.153 4.153 17 C 0.180 3.820 18 F -0.110 7.110 19 C -0.113 4.113 20 C 0.003 3.997 21 C -0.011 4.011 22 N -0.022 5.022 23 O -0.150 6.150 24 O -0.222 6.222 25 H 0.112 0.888 26 H 0.152 0.848 27 H 0.299 0.701 28 H 0.143 0.857 29 H 0.220 0.780 30 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 20.094 -8.780 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.103 4.103 3 C 0.045 3.955 4 N -0.135 5.135 5 C -0.507 4.507 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.472 5.472 9 Si 0.738 3.262 10 H -0.141 1.141 11 H -0.193 1.193 12 H -0.167 1.167 13 C 0.264 3.736 14 O -0.451 6.451 15 C -0.031 4.031 16 C -0.174 4.174 17 C 0.159 3.841 18 F -0.088 7.088 19 C -0.132 4.132 20 C -0.016 4.016 21 C -0.100 4.100 22 N 0.450 4.550 23 O -0.352 6.352 24 O -0.398 6.398 25 H 0.129 0.871 26 H 0.170 0.830 27 H 0.111 0.889 28 H 0.161 0.839 29 H 0.237 0.763 30 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.700 19.650 -8.757 21.580 hybrid contribution 0.832 -1.022 0.824 1.554 sum -0.868 18.628 -7.934 20.265 Atomic orbital electron populations 1.81111 1.13165 1.08497 1.09202 1.29688 0.95428 0.92608 0.92605 1.19891 0.81451 0.90664 1.03472 1.42275 1.53855 1.09976 1.07443 1.19501 1.53284 0.86547 0.91388 0.92367 1.27765 0.94400 1.01356 0.94750 1.68762 1.36508 1.36439 1.05471 0.86308 0.80644 0.79199 0.80039 1.14067 1.19324 1.16656 1.18158 0.83322 0.88540 0.83559 1.90679 1.51167 1.31950 1.71256 1.19709 0.92862 0.95036 0.95511 1.21297 0.97025 0.95989 1.03059 1.17806 0.83326 0.88685 0.94250 1.91637 1.46609 1.76826 1.93729 1.21734 0.87881 1.03042 1.00504 1.21389 1.01597 0.87637 0.90993 1.20622 0.81534 0.98194 1.09618 1.50689 1.03608 1.01118 0.99607 1.96125 1.27346 1.71816 1.39952 1.96554 1.92109 1.16727 1.34431 0.87072 0.83045 0.88870 0.83886 0.76327 0.77877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -16.64 18.54 20.01 0.37 -16.27 16 2 C 0.22 7.69 13.41 89.44 1.20 8.89 16 3 C 0.17 5.96 4.45 84.57 0.38 6.33 16 4 N -0.42 -19.42 2.23 -643.98 -1.44 -20.86 16 5 C -0.38 -21.12 9.70 86.70 0.84 -20.28 16 6 H 0.06 3.88 7.68 -2.91 -0.02 3.86 16 7 C 0.03 1.64 5.51 87.30 0.48 2.12 16 8 N -0.84 -45.18 13.88 23.26 0.32 -44.86 16 9 Si 0.92 35.11 25.06 68.60 1.72 36.83 16 10 H -0.22 -6.67 6.71 99.48 0.67 -6.00 16 11 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 12 H -0.24 -9.10 7.11 99.48 0.71 -8.40 16 13 C 0.47 22.17 5.46 86.74 0.47 22.65 16 14 O -0.57 -32.60 14.65 19.20 0.28 -32.32 16 15 C -0.03 -0.86 4.55 -20.09 -0.09 -0.95 16 16 C -0.15 -3.88 7.81 22.59 0.18 -3.70 16 17 C 0.18 2.93 7.29 22.34 0.16 3.09 16 18 F -0.11 -1.75 17.26 44.97 0.78 -0.97 16 19 C -0.11 -1.08 10.02 22.38 0.22 -0.86 16 20 C 0.00 0.04 9.57 22.22 0.21 0.25 16 21 C -0.01 -0.33 6.90 36.65 0.25 -0.08 16 22 N -0.02 -0.86 4.98 -45.81 -0.23 -1.09 16 23 O -0.15 -5.17 19.17 3.51 0.07 -5.11 16 24 O -0.22 -11.21 15.69 11.37 0.18 -11.03 16 25 H 0.11 3.82 2.39 -2.39 -0.01 3.81 16 26 H 0.15 3.87 5.95 -2.39 -0.01 3.85 16 27 H 0.30 14.24 8.26 -92.71 -0.77 13.47 16 28 H 0.14 4.01 5.83 -2.91 -0.02 4.00 16 29 H 0.22 -0.13 8.06 -2.91 -0.02 -0.16 16 30 H 0.20 1.81 7.59 -2.91 -0.02 1.78 16 Total: -1.00 -78.95 282.80 7.57 -71.38 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 1.21 Total: 6.83 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 4.31 Total: 17.46 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -0.97 Total: -83.08 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: 0.53 Total: -48.45 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.78 Total: -0.97 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 1.72 Total: 36.83 kcal Total: -78.95 7.57 -71.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037669527.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.014 kcal (2) G-P(sol) polarization free energy of solvation -78.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds