Wall clock time and date at job start Tue Mar 31 2020 07:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47322 * 220.48476 * 3 2 1 5 5 N 1.46493 * 109.47334 * 180.02562 * 4 3 2 6 6 C 1.46509 * 119.99528 * 270.72453 * 5 4 3 7 7 C 1.50703 * 109.47052 * 278.64506 * 6 5 4 8 8 H 1.08003 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99996 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00082 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99886 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47146 * 60.00016 * 11 9 7 13 13 H 1.48505 * 109.46629 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47211 * 299.99431 * 11 9 7 15 15 C 1.34772 * 120.00454 * 90.72416 * 5 4 3 16 16 O 1.21557 * 119.99988 * 7.05409 * 15 5 4 17 17 C 1.47762 * 120.00245 * 187.05337 * 15 5 4 18 18 C 1.40022 * 120.56728 * 328.99247 * 17 15 5 19 19 C 1.38354 * 118.30329 * 180.23681 * 18 17 15 20 20 C 1.38350 * 119.33859 * 359.48450 * 19 18 17 21 21 N 1.31923 * 121.10974 * 0.25156 * 20 19 18 22 22 C 1.31824 * 121.85495 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 119.73283 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.47078 * 100.48675 * 3 2 1 25 25 H 1.09001 * 109.47259 * 340.48571 * 3 2 1 26 26 H 1.09000 * 109.47448 * 59.99651 * 4 3 2 27 27 H 1.09001 * 109.47032 * 300.00235 * 4 3 2 28 28 H 1.08993 * 109.47044 * 38.64469 * 6 5 4 29 29 H 1.09000 * 109.46826 * 158.64701 * 6 5 4 30 30 H 0.96997 * 120.00124 * 180.02562 * 10 9 7 31 31 H 1.08000 * 120.85217 * 359.97438 * 18 17 15 32 32 H 1.07993 * 120.32765 * 179.76525 * 19 18 17 33 33 H 1.08000 * 119.44780 * 180.23262 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0980 0.9365 5 7 4.5824 1.0990 0.9360 6 6 5.3158 0.2635 1.8902 7 6 5.3819 0.9631 3.2234 8 1 4.9231 1.9330 3.3476 9 6 6.0280 0.3652 4.2845 10 7 6.5861 -0.8160 4.1334 11 14 6.1092 1.2321 5.9372 12 1 4.7323 1.4665 6.4415 13 1 6.8527 0.3852 6.9043 14 1 6.8070 2.5335 5.7797 15 6 5.2556 1.8686 0.0579 16 8 4.6540 2.6564 -0.6456 17 6 6.7248 1.7546 -0.0497 18 6 7.4961 1.4109 1.0673 19 6 8.8683 1.3222 0.9148 20 6 9.4294 1.5628 -0.3267 21 7 8.6786 1.8797 -1.3642 22 6 7.3678 1.9821 -1.2690 23 17 6.4330 2.4031 -2.6700 24 1 2.9712 0.1879 -1.0105 25 1 2.9717 -0.9678 0.3433 26 1 2.7542 0.9109 1.9470 27 1 2.7537 2.0664 0.5932 28 1 4.8030 -0.6913 2.0061 29 1 6.3263 0.0907 1.5201 30 1 7.0404 -1.2368 4.8800 31 1 7.0321 1.2240 2.0244 32 1 9.4948 1.0633 1.7555 33 1 10.5000 1.4904 -0.4486 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037976157.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:28 Heat of formation + Delta-G solvation = 30.556881 kcal Electronic energy + Delta-G solvation = -20873.158125 eV Core-core repulsion = 17539.518364 eV Total energy + Delta-G solvation = -3333.639761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.76854 -40.06932 -37.94696 -37.60151 -36.93101 -34.91412 -33.95515 -32.41453 -31.73284 -29.24571 -26.29729 -25.31372 -24.37964 -23.94667 -20.70465 -18.88712 -18.41381 -18.27756 -18.10013 -17.70678 -16.76932 -16.37032 -15.93886 -15.88124 -15.46208 -15.22489 -14.87707 -14.73775 -14.37145 -14.17149 -13.62332 -13.49598 -13.34550 -13.00454 -12.79246 -12.73371 -12.69978 -12.26792 -12.15944 -12.04059 -11.79388 -11.70334 -11.11715 -10.83655 -10.53537 -10.22833 -9.98037 -9.51505 -8.19564 -6.33929 -0.35885 0.14978 0.83126 1.47521 1.52702 1.56441 1.59677 1.77891 1.87868 2.16536 2.44368 2.73398 3.10026 3.12366 3.46248 3.71479 3.90885 4.11442 4.12579 4.13989 4.31832 4.49539 4.55380 4.83144 4.92052 5.03258 5.13252 5.25709 5.30678 5.56385 5.68811 5.78855 6.03439 6.48578 6.54261 6.65571 6.80498 7.21778 7.38974 8.83573 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.009733 B = 0.008056 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.173338 B = 3475.027638 C = 5890.619868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.032 4.032 4 C 0.124 3.876 5 N -0.586 5.586 6 C 0.219 3.781 7 C -0.553 4.553 8 H 0.056 0.944 9 C 0.042 3.958 10 N -0.900 5.900 11 Si 0.941 3.059 12 H -0.279 1.279 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.559 3.441 16 O -0.559 6.559 17 C -0.188 4.188 18 C -0.052 4.052 19 C -0.176 4.176 20 C 0.139 3.861 21 N -0.507 5.507 22 C 0.202 3.798 23 Cl -0.018 7.018 24 H 0.120 0.880 25 H 0.131 0.869 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.272 0.728 31 H 0.195 0.805 32 H 0.170 0.830 33 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.971 0.482 -5.138 7.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.072 4.072 3 C -0.073 4.073 4 C -0.001 4.001 5 N -0.315 5.315 6 C 0.099 3.901 7 C -0.591 4.591 8 H 0.074 0.926 9 C -0.162 4.162 10 N -0.537 5.537 11 Si 0.767 3.233 12 H -0.205 1.205 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.347 3.653 16 O -0.439 6.439 17 C -0.194 4.194 18 C -0.077 4.077 19 C -0.196 4.196 20 C -0.017 4.017 21 N -0.219 5.219 22 C 0.038 3.962 23 Cl 0.010 6.990 24 H 0.138 0.862 25 H 0.149 0.851 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.211 0.789 32 H 0.188 0.812 33 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.353 0.913 -6.327 7.734 hybrid contribution -0.119 0.166 1.717 1.729 sum 4.234 1.078 -4.611 6.352 Atomic orbital electron populations 1.81204 1.14262 1.10538 1.10641 1.29168 0.95033 0.91499 0.91458 1.19707 0.80216 1.03399 1.03992 1.21208 0.79595 0.98827 1.00434 1.47932 1.06370 1.43447 1.33762 1.20086 0.93825 0.90085 0.86065 1.21550 1.36637 1.05027 0.95895 0.92553 1.25416 0.94584 0.95125 1.01053 1.69953 1.35209 1.15170 1.33380 0.85862 0.78191 0.78897 0.80306 1.20507 1.20785 1.19657 1.18073 0.86600 0.80586 0.80007 1.90738 1.69885 1.37523 1.45761 1.20604 0.95378 1.08845 0.94581 1.23684 0.95115 0.87867 1.01036 1.22587 0.95095 1.01455 1.00423 1.23546 1.01378 0.90251 0.86544 1.67164 1.04035 1.16003 1.34684 1.21754 0.90128 0.96565 0.87787 1.98400 1.69818 1.90874 1.39882 0.86237 0.85093 0.89036 0.90097 0.94828 0.91995 0.91891 0.78914 0.81237 0.77506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.81 18.54 20.01 0.37 -15.44 16 2 C 0.25 6.67 15.43 89.44 1.38 8.05 16 3 C -0.03 -0.76 6.03 28.79 0.17 -0.58 16 4 C 0.12 3.69 5.42 86.38 0.47 4.15 16 5 N -0.59 -20.51 2.47 -829.68 -2.05 -22.56 16 6 C 0.22 8.50 4.66 85.63 0.40 8.90 16 7 C -0.55 -23.97 7.53 25.60 0.19 -23.77 16 8 H 0.06 2.54 7.81 -2.91 -0.02 2.52 16 9 C 0.04 1.84 5.34 84.65 0.45 2.30 16 10 N -0.90 -41.34 13.29 21.45 0.28 -41.06 16 11 Si 0.94 36.49 29.54 68.60 2.03 38.51 16 12 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 13 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 14 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 15 C 0.56 20.84 7.25 86.76 0.63 21.47 16 16 O -0.56 -22.33 14.40 -3.89 -0.06 -22.38 16 17 C -0.19 -6.68 5.58 -19.97 -0.11 -6.79 16 18 C -0.05 -1.77 7.59 22.73 0.17 -1.59 16 19 C -0.18 -4.64 10.10 22.32 0.23 -4.41 16 20 C 0.14 3.32 11.17 84.71 0.95 4.26 16 21 N -0.51 -15.41 10.33 -185.59 -1.92 -17.33 16 22 C 0.20 6.88 7.30 85.05 0.62 7.51 16 23 Cl -0.02 -0.61 26.71 -2.72 -0.07 -0.68 16 24 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 25 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.09 2.74 8.08 -2.39 -0.02 2.72 16 27 H 0.08 2.51 7.31 -2.39 -0.02 2.49 16 28 H 0.03 1.35 8.13 -2.39 -0.02 1.33 16 29 H 0.06 2.47 4.02 -2.39 -0.01 2.46 16 30 H 0.27 12.04 8.31 -92.71 -0.77 11.27 16 31 H 0.19 7.44 3.31 -2.91 -0.01 7.43 16 32 H 0.17 3.57 8.06 -2.91 -0.02 3.54 16 33 H 0.21 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -54.95 309.36 5.30 -49.64 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.17 Total: 11.81 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 5.55 Total: 19.48 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -3.31 Total: -96.38 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.06 Total: -22.38 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.51 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.07 Total: -0.68 kcal Total: -54.95 5.30 -49.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037976157.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.199 kcal (2) G-P(sol) polarization free energy of solvation -54.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds