Wall clock time and date at job start Tue Mar 31 2020 07:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47416 * 92.12919 * 3 2 1 5 5 N 1.46505 * 109.47237 * 185.41945 * 4 3 2 6 6 C 1.46501 * 119.99554 * 277.95457 * 5 4 3 7 7 C 1.50694 * 109.47294 * 270.00013 * 6 5 4 8 8 H 1.07999 * 120.00205 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99867 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99975 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00094 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47092 * 60.00040 * 11 9 7 13 13 H 1.48498 * 109.47557 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47322 * 300.00347 * 11 9 7 15 15 C 1.34768 * 120.00091 * 97.96004 * 5 4 3 16 16 O 1.21561 * 120.00326 * 185.83040 * 15 5 4 17 17 C 1.47791 * 120.00093 * 5.82910 * 15 5 4 18 18 C 1.40084 * 120.54296 * 315.03530 * 17 15 5 19 19 C 1.38254 * 118.30376 * 179.97438 * 18 17 15 20 20 C 1.38546 * 119.29533 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 119.47664 * 180.02562 * 20 19 18 22 22 N 1.32038 * 121.04730 * 0.27735 * 20 19 18 23 23 C 1.31688 * 121.85954 * 359.43362 * 22 20 19 24 24 H 1.09004 * 109.47665 * 332.12429 * 3 2 1 25 25 H 1.09003 * 109.46640 * 212.12802 * 3 2 1 26 26 H 1.08997 * 109.47180 * 65.41769 * 4 3 2 27 27 H 1.08997 * 109.46750 * 305.41561 * 4 3 2 28 28 H 1.08998 * 109.46986 * 30.00881 * 6 5 4 29 29 H 1.09004 * 109.46537 * 150.00268 * 6 5 4 30 30 H 0.97006 * 119.99922 * 179.97438 * 10 9 7 31 31 H 1.08000 * 120.84913 * 359.95434 * 18 17 15 32 32 H 1.08004 * 120.35389 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.71138 * 180.31185 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.0545 -1.4414 5 7 4.5773 -0.0752 -1.4483 6 6 5.4179 1.0967 -1.1905 7 6 5.7255 1.7904 -2.4924 8 1 5.3338 1.3980 -3.4192 9 6 6.5072 2.9261 -2.5005 10 7 6.9848 3.4037 -1.3720 11 14 6.8892 3.7857 -4.1143 12 1 5.6221 4.2178 -4.7571 13 1 7.7422 4.9729 -3.8532 14 1 7.6074 2.8495 -5.0160 15 6 5.1463 -1.2723 -1.6918 16 8 6.3507 -1.4041 -1.5934 17 6 4.3060 -2.4250 -2.0785 18 6 3.1148 -2.6989 -1.3942 19 6 2.3643 -3.7886 -1.7950 20 6 2.8097 -4.5672 -2.8509 21 17 1.8707 -5.9362 -3.3585 22 7 3.9397 -4.2873 -3.4740 23 6 4.6854 -3.2572 -3.1320 24 1 2.9718 -0.9076 0.4805 25 1 2.9708 0.8712 0.5466 26 1 2.8357 1.0062 -1.8914 27 1 2.6780 -0.7626 -2.0132 28 1 4.8906 1.7835 -0.5285 29 1 6.3482 0.7797 -0.7190 30 1 7.5351 4.2026 -1.3777 31 1 2.7911 -2.0749 -0.5743 32 1 1.4401 -4.0299 -1.2909 33 1 5.6010 -3.0575 -3.6690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037981347.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:50 Heat of formation + Delta-G solvation = 13.631394 kcal Electronic energy + Delta-G solvation = -20451.497955 eV Core-core repulsion = 17117.124250 eV Total energy + Delta-G solvation = -3334.373705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.94036 -40.16567 -38.15138 -37.72500 -36.81283 -35.02453 -33.81099 -32.39368 -32.26179 -29.27008 -26.03644 -25.44788 -24.90753 -24.04938 -20.67292 -19.06973 -18.68661 -18.42083 -18.15103 -17.80096 -17.12567 -16.37337 -16.13436 -15.86454 -15.52279 -15.39069 -14.99236 -14.48455 -14.28942 -14.21253 -13.75286 -13.52635 -13.48876 -13.18985 -13.00293 -12.81150 -12.70519 -12.49892 -12.40984 -12.16053 -12.08101 -11.70500 -11.20745 -10.98222 -10.64386 -10.56147 -10.13920 -9.58000 -8.17219 -6.28889 -0.54000 -0.03860 0.64187 1.43082 1.45617 1.51577 1.59523 1.73440 1.81385 2.12707 2.44709 2.49862 2.98897 3.15744 3.27298 3.47609 3.59894 3.73564 3.88134 3.96760 4.02609 4.34292 4.50363 4.63832 4.76863 4.79712 5.00340 5.08730 5.23460 5.35364 5.55748 5.83767 6.12185 6.44365 6.56140 6.59903 6.79409 7.20352 7.42674 8.89433 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.015702 B = 0.004586 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.786979 B = 6103.758838 C = 7189.305379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.241 3.759 3 C -0.047 4.047 4 C 0.101 3.899 5 N -0.584 5.584 6 C 0.258 3.742 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.017 3.983 10 N -0.922 5.922 11 Si 0.953 3.047 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.280 1.280 15 C 0.556 3.444 16 O -0.572 6.572 17 C -0.173 4.173 18 C -0.036 4.036 19 C -0.144 4.144 20 C 0.176 3.824 21 Cl -0.019 7.019 22 N -0.497 5.497 23 C 0.161 3.839 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.046 0.954 29 H 0.012 0.988 30 H 0.266 0.734 31 H 0.179 0.821 32 H 0.185 0.815 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.720 -12.667 1.551 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.077 4.077 3 C -0.088 4.088 4 C -0.023 4.023 5 N -0.313 5.313 6 C 0.137 3.863 7 C -0.583 4.583 8 H 0.072 0.928 9 C -0.183 4.183 10 N -0.562 5.562 11 Si 0.779 3.221 12 H -0.189 1.189 13 H -0.208 1.208 14 H -0.206 1.206 15 C 0.344 3.656 16 O -0.452 6.452 17 C -0.178 4.178 18 C -0.061 4.061 19 C -0.164 4.164 20 C 0.012 3.988 21 Cl 0.009 6.991 22 N -0.208 5.208 23 C 0.003 3.997 24 H 0.155 0.845 25 H 0.152 0.848 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.196 0.804 32 H 0.202 0.798 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.503 -13.215 0.951 18.217 hybrid contribution 0.867 1.105 -0.312 1.439 sum -11.636 -12.110 0.639 16.806 Atomic orbital electron populations 1.81285 1.14027 1.10411 1.09483 1.28936 0.94698 0.91881 0.92180 1.19952 0.80696 1.08535 0.99567 1.21779 0.79304 1.05555 0.95675 1.47981 1.07140 1.08399 1.67748 1.18954 0.90071 0.81554 0.95687 1.21701 1.32068 1.10241 0.94328 0.92772 1.25634 0.95375 0.97869 0.99384 1.69998 1.35168 1.23569 1.27418 0.85678 0.78536 0.77802 0.80069 1.18936 1.20841 1.20553 1.18333 0.86968 0.82985 0.77357 1.90789 1.16528 1.84424 1.53440 1.21001 0.97827 0.98346 1.00653 1.22436 0.90197 0.95377 0.98122 1.22110 1.03155 0.94486 0.96697 1.22211 0.91581 0.91601 0.93397 1.98418 1.68531 1.41131 1.90976 1.67079 1.05606 1.18256 1.29837 1.22763 0.97284 0.86970 0.92679 0.84476 0.84803 0.88872 0.88254 0.93582 0.96970 0.92500 0.80374 0.79750 0.81430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.42 18.54 20.00 0.37 -11.04 16 2 C 0.24 4.41 15.35 89.44 1.37 5.78 16 3 C -0.05 -0.73 5.09 28.79 0.15 -0.58 16 4 C 0.10 2.29 4.84 86.38 0.42 2.71 16 5 N -0.58 -19.64 2.46 -829.65 -2.04 -21.69 16 6 C 0.26 11.57 5.22 85.63 0.45 12.02 16 7 C -0.54 -27.89 9.39 25.60 0.24 -27.65 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.02 0.91 5.46 84.65 0.46 1.37 16 10 N -0.92 -51.16 13.29 21.45 0.28 -50.88 16 11 Si 0.95 42.05 29.54 68.60 2.03 44.08 16 12 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 C 0.56 19.65 7.30 86.77 0.63 20.28 16 16 O -0.57 -26.09 16.55 -3.91 -0.06 -26.16 16 17 C -0.17 -4.59 5.11 -19.99 -0.10 -4.69 16 18 C -0.04 -0.65 7.53 22.72 0.17 -0.48 16 19 C -0.14 -2.36 9.86 22.35 0.22 -2.14 16 20 C 0.18 3.78 7.27 84.74 0.62 4.40 16 21 Cl -0.02 -0.36 29.10 -2.72 -0.08 -0.44 16 22 N -0.50 -13.08 10.32 -185.58 -1.92 -15.00 16 23 C 0.16 4.43 10.86 85.02 0.92 5.35 16 24 H 0.14 1.46 6.23 -2.38 -0.01 1.45 16 25 H 0.13 2.03 8.07 -2.39 -0.02 2.01 16 26 H 0.09 2.27 8.13 -2.39 -0.02 2.25 16 27 H 0.10 1.91 5.02 -2.39 -0.01 1.90 16 28 H 0.05 1.99 8.00 -2.39 -0.02 1.97 16 29 H 0.01 0.64 7.35 -2.38 -0.02 0.63 16 30 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 31 H 0.18 2.31 3.67 -2.91 -0.01 2.30 16 32 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.17 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -68.75 313.10 5.30 -63.45 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 1.17 Total: 1.30 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 5.55 Total: 16.38 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -3.30 Total: -98.61 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.06 Total: -26.16 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -0.08 Total: -0.44 kcal Total: -68.75 5.30 -63.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037981347.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.082 kcal (2) G-P(sol) polarization free energy of solvation -68.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds