Wall clock time and date at job start Tue Mar 31 2020 07:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46998 * 275.00334 * 3 2 1 5 5 N 1.46501 * 109.47271 * 185.41537 * 4 3 2 6 6 C 1.46500 * 119.99695 * 277.85776 * 5 4 3 7 7 C 1.50708 * 109.46972 * 269.99603 * 6 5 4 8 8 H 1.08000 * 119.99702 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99802 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00055 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99483 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47052 * 90.00239 * 11 9 7 13 13 H 1.48503 * 109.46704 * 209.99876 * 11 9 7 14 14 H 1.48498 * 109.47094 * 329.99701 * 11 9 7 15 15 C 1.34767 * 120.00166 * 97.85129 * 5 4 3 16 16 O 1.21514 * 120.00399 * 185.79585 * 15 5 4 17 17 C 1.48153 * 119.99890 * 5.79544 * 15 5 4 18 18 C 1.39862 * 120.91752 * 315.44782 * 17 15 5 19 19 C 1.38091 * 119.03620 * 180.02562 * 18 17 15 20 20 N 1.31847 * 120.91901 * 359.97438 * 19 18 17 21 21 C 1.31895 * 122.02678 * 359.73635 * 20 19 18 22 22 Cl 1.73597 * 119.56860 * 180.26349 * 21 20 19 23 23 C 1.38344 * 120.86054 * 0.53418 * 21 20 19 24 24 H 1.08995 * 109.46962 * 155.00326 * 3 2 1 25 25 H 1.09004 * 109.47116 * 35.00078 * 3 2 1 26 26 H 1.09004 * 109.46920 * 65.41439 * 4 3 2 27 27 H 1.08998 * 109.47329 * 305.41476 * 4 3 2 28 28 H 1.08997 * 109.47391 * 29.99370 * 6 5 4 29 29 H 1.09000 * 109.47209 * 150.00257 * 6 5 4 30 30 H 0.97010 * 119.99566 * 179.97438 * 10 9 7 31 31 H 1.08005 * 120.48459 * 0.02562 * 18 17 15 32 32 H 1.07997 * 119.54163 * 179.97438 * 19 18 17 33 33 H 1.08004 * 120.50747 * 179.75149 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1181 -0.1249 1.4370 5 7 4.5772 0.0054 1.4505 6 6 5.4189 -1.1519 1.1365 7 6 5.7269 -1.9075 2.4036 8 1 5.3346 -1.5606 3.3481 9 6 6.5096 -3.0417 2.3568 10 7 6.9868 -3.4643 1.2066 11 14 6.8907 -3.9787 3.9273 12 1 5.8463 -5.0096 4.1544 13 1 8.2163 -4.6362 3.8019 14 1 6.9126 -3.0351 5.0737 15 6 5.1453 1.1898 1.7516 16 8 6.3492 1.3270 1.6607 17 6 4.3018 2.3248 2.1936 18 6 3.1070 2.6316 1.5344 19 6 2.3512 3.6984 1.9789 20 7 2.7416 4.4228 3.0090 21 6 3.8579 4.1650 3.6625 22 17 4.3075 5.1564 5.0147 23 6 4.6779 3.1182 3.2809 24 1 2.9709 0.9322 -0.4342 25 1 2.9718 -0.8410 -0.5895 26 1 2.8365 -1.0983 1.8387 27 1 2.6774 0.6620 2.0491 28 1 4.8923 -1.8064 0.4421 29 1 6.3490 -0.8118 0.6811 30 1 7.5378 -4.2621 1.1738 31 1 2.7802 2.0427 0.6901 32 1 1.4274 3.9429 1.4756 33 1 5.5928 2.9146 3.8176 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038102936.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:12 Heat of formation + Delta-G solvation = 14.284695 kcal Electronic energy + Delta-G solvation = -20476.340434 eV Core-core repulsion = 17141.995058 eV Total energy + Delta-G solvation = -3334.345376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94557 -40.21824 -38.16191 -37.72850 -36.83191 -35.02879 -33.79318 -32.56494 -31.94306 -29.42245 -26.30983 -25.44807 -24.70279 -24.09750 -20.84555 -19.09439 -18.57797 -18.32719 -18.07694 -17.59582 -16.98174 -16.65489 -16.12597 -15.93014 -15.65981 -15.39384 -15.00031 -14.84151 -14.35303 -14.24106 -13.65869 -13.62560 -13.22334 -13.05883 -13.01188 -12.84420 -12.67311 -12.51413 -12.40370 -12.18338 -12.03053 -11.71550 -11.34423 -11.06154 -10.59607 -10.57936 -10.09812 -9.62704 -8.19341 -6.31054 -0.41847 -0.21904 0.64475 1.40911 1.43631 1.51717 1.60014 1.72462 1.83122 2.10342 2.42747 2.50774 2.94563 3.13818 3.34741 3.44488 3.67170 3.72377 3.90887 3.96866 4.03182 4.36703 4.49199 4.51705 4.77038 4.82218 4.99975 5.09198 5.27469 5.32583 5.52559 5.81084 6.09531 6.50571 6.51833 6.59913 6.76924 7.13928 7.40107 8.87561 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.005294 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.134999 B = 5287.258324 C = 6896.615401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.242 3.758 3 C -0.046 4.046 4 C 0.099 3.901 5 N -0.581 5.581 6 C 0.257 3.743 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.017 3.983 10 N -0.921 5.921 11 Si 0.954 3.046 12 H -0.267 1.267 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.550 3.450 16 O -0.570 6.570 17 C -0.067 4.067 18 C -0.141 4.141 19 C 0.127 3.873 20 N -0.481 5.481 21 C 0.168 3.832 22 Cl -0.023 7.023 23 C -0.118 4.118 24 H 0.139 0.861 25 H 0.133 0.867 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.012 0.988 30 H 0.266 0.734 31 H 0.178 0.822 32 H 0.210 0.790 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.918 12.149 0.020 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.076 4.076 3 C -0.086 4.086 4 C -0.025 4.025 5 N -0.310 5.310 6 C 0.137 3.863 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.182 4.182 10 N -0.561 5.561 11 Si 0.780 3.220 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.200 1.200 15 C 0.337 3.663 16 O -0.449 6.449 17 C -0.078 4.078 18 C -0.161 4.161 19 C -0.030 4.030 20 N -0.193 5.193 21 C 0.004 3.996 22 Cl 0.006 6.994 23 C -0.140 4.140 24 H 0.156 0.844 25 H 0.151 0.849 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.195 0.805 32 H 0.227 0.773 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.336 12.820 0.281 17.116 hybrid contribution 1.766 -1.381 0.712 2.352 sum -9.570 11.439 0.993 14.948 Atomic orbital electron populations 1.81290 1.14014 1.10421 1.09487 1.28908 0.94654 0.91863 0.92172 1.19927 0.80745 1.08432 0.99519 1.21832 0.79066 1.05655 0.95935 1.47979 1.07345 1.09573 1.66087 1.18984 0.90062 0.81747 0.95518 1.21717 1.32074 1.09924 0.94683 0.92850 1.25634 0.95335 0.98208 0.99072 1.70003 1.35145 1.24766 1.26142 0.85614 0.77780 0.78754 0.79881 1.19250 1.21042 1.20029 1.18491 0.87010 0.82968 0.77819 1.90783 1.16467 1.83350 1.54291 1.20308 0.95739 0.95449 0.96306 1.23099 0.92456 0.98993 1.01568 1.23312 0.99993 0.89152 0.90506 1.66977 1.14316 1.29754 1.08278 1.21486 0.92665 0.92476 0.92933 1.98409 1.90828 1.69079 1.41108 1.21869 1.00820 0.94027 0.97292 0.84387 0.84893 0.88831 0.88048 0.93392 0.96952 0.92465 0.80471 0.77309 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.31 18.54 20.01 0.37 -10.94 16 2 C 0.24 4.37 15.34 89.44 1.37 5.74 16 3 C -0.05 -0.70 5.09 28.79 0.15 -0.56 16 4 C 0.10 2.25 4.84 86.38 0.42 2.66 16 5 N -0.58 -19.64 2.46 -829.21 -2.04 -21.68 16 6 C 0.26 11.56 5.22 85.64 0.45 12.01 16 7 C -0.55 -27.98 9.39 25.60 0.24 -27.74 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.02 0.92 5.46 84.66 0.46 1.38 16 10 N -0.92 -51.02 13.29 21.45 0.28 -50.73 16 11 Si 0.95 42.06 29.54 68.60 2.03 44.09 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 15 C 0.55 19.65 7.34 86.88 0.64 20.28 16 16 O -0.57 -26.26 16.56 -3.76 -0.06 -26.32 16 17 C -0.07 -1.79 5.14 -19.88 -0.10 -1.89 16 18 C -0.14 -2.57 7.51 22.63 0.17 -2.40 16 19 C 0.13 2.11 11.17 84.66 0.95 3.06 16 20 N -0.48 -10.86 10.31 -186.85 -1.93 -12.79 16 21 C 0.17 4.15 7.27 84.71 0.62 4.77 16 22 Cl -0.02 -0.52 29.10 -2.72 -0.08 -0.60 16 23 C -0.12 -3.22 9.58 22.66 0.22 -3.00 16 24 H 0.14 1.45 6.26 -2.39 -0.01 1.43 16 25 H 0.13 2.00 8.08 -2.39 -0.02 1.98 16 26 H 0.09 2.27 8.13 -2.38 -0.02 2.25 16 27 H 0.10 1.94 5.01 -2.39 -0.01 1.93 16 28 H 0.05 2.07 8.01 -2.39 -0.02 2.05 16 29 H 0.01 0.65 7.35 -2.39 -0.02 0.64 16 30 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 31 H 0.18 2.24 3.66 -2.91 -0.01 2.23 16 32 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -69.30 313.20 5.31 -63.99 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: 1.17 Total: 0.66 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.57 Total: 14.32 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -3.31 Total: -96.14 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.06 Total: -26.32 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -69.30 5.31 -63.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038102936.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.274 kcal (2) G-P(sol) polarization free energy of solvation -69.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds