Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86799 * 119.99898 * 2 1 4 4 H 1.48496 * 109.47628 * 270.00090 * 3 2 1 5 5 H 1.48509 * 109.46985 * 30.00246 * 3 2 1 6 6 H 1.48500 * 109.47275 * 149.99789 * 3 2 1 7 7 C 1.38775 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00439 * 0.02562 * 7 2 1 9 9 O 1.34882 * 119.99723 * 179.97438 * 7 2 1 10 10 C 1.34786 * 117.00049 * 180.02562 * 9 7 2 11 11 O 1.21548 * 119.99623 * 0.02562 * 10 9 7 12 12 C 1.47333 * 120.00275 * 180.02562 * 10 9 7 13 13 C 1.37725 * 125.87445 * 180.30158 * 12 10 9 14 14 N 1.35062 * 106.62580 * 180.14468 * 13 12 10 15 15 C 1.40241 * 126.57397 * 179.88928 * 14 13 12 16 16 C 1.38821 * 120.06829 * 359.73231 * 15 14 13 17 17 C 1.38119 * 119.94583 * 180.02562 * 16 15 14 18 18 C 1.38300 * 120.09129 * 359.97343 * 17 16 15 19 19 C 1.38245 * 120.14109 * 0.02562 * 18 17 16 20 20 C 1.38248 * 120.05108 * 0.02562 * 19 18 17 21 21 Cl 1.73608 * 120.04089 * 180.02562 * 20 19 18 22 22 N 1.40179 * 106.85816 * 359.62450 * 14 13 12 23 23 N 1.28715 * 108.62749 * 0.23942 * 22 14 13 24 24 H 0.97001 * 120.00371 * 359.97438 * 1 2 3 25 25 H 1.07996 * 126.68812 * 0.04106 * 13 12 10 26 26 H 1.08000 * 120.03136 * 0.02562 * 16 15 14 27 27 H 1.08007 * 119.95383 * 179.97438 * 17 16 15 28 28 H 1.08003 * 119.92593 * 180.28072 * 18 17 16 29 29 H 1.07997 * 119.96957 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5459 1.4403 0.7001 7 6 2.0082 -1.2018 0.0005 8 1 1.4683 -2.1371 0.0005 9 8 3.3571 -1.2018 0.0000 10 6 3.9690 -2.4027 0.0000 11 8 3.3070 -3.4221 0.0001 12 6 5.4403 -2.4798 0.0001 13 6 6.1879 -3.6365 -0.0058 14 7 7.4846 -3.2586 -0.0002 15 6 8.6020 -4.1060 -0.0009 16 6 8.4302 -5.4835 -0.0023 17 6 9.5325 -6.3158 -0.0025 18 6 10.8069 -5.7787 -0.0018 19 6 10.9823 -4.4074 -0.0004 20 6 9.8831 -3.5689 0.0009 21 17 10.1036 -1.8469 0.0020 22 7 7.4995 -1.8568 0.0003 23 7 6.2842 -1.4327 0.0004 24 1 -0.4851 0.8400 0.0004 25 1 5.8108 -4.6484 -0.0118 26 1 7.4355 -5.9042 -0.0033 27 1 9.3989 -7.3876 -0.0032 28 1 11.6669 -6.4320 -0.0066 29 1 11.9787 -3.9910 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040871817.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = 34.722237 kcal Electronic energy + Delta-G solvation = -19734.965762 eV Core-core repulsion = 16265.673529 eV Total energy + Delta-G solvation = -3469.292232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.035 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.56751 -41.07864 -40.38023 -37.51237 -37.49317 -35.89929 -34.54541 -32.49359 -31.82534 -30.94837 -28.00687 -25.60451 -25.23047 -23.59748 -22.68096 -21.66050 -20.21889 -20.00452 -18.39571 -17.54412 -17.51173 -17.05559 -16.57160 -16.49902 -16.25128 -15.85733 -15.42052 -14.88311 -14.73554 -14.59267 -14.29951 -13.77671 -13.39709 -13.07679 -12.86911 -12.61861 -12.48889 -12.41850 -12.34946 -12.27919 -11.89504 -11.67659 -11.37436 -10.87975 -10.70500 -10.02590 -9.64888 -8.60179 -6.43691 -0.79346 0.02251 0.32061 0.61521 0.67892 1.10112 1.30973 1.34596 1.54056 1.96838 2.09195 2.27334 2.48796 2.89963 3.01510 3.19908 3.57184 3.70915 3.84965 4.03665 4.13713 4.22569 4.33343 4.58013 4.64395 4.99121 5.12701 5.28489 5.32599 5.40244 5.69194 5.82568 6.33026 6.69463 6.76334 7.49986 8.51398 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.029744 B = 0.003882 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.136818 B = 7210.555721 C = 8141.849408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.027 3.973 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.262 1.262 7 C -0.405 4.405 8 H 0.073 0.927 9 O -0.242 6.242 10 C 0.498 3.502 11 O -0.553 6.553 12 C -0.079 4.079 13 C 0.116 3.884 14 N -0.304 5.304 15 C 0.104 3.896 16 C -0.112 4.112 17 C -0.082 4.082 18 C -0.086 4.086 19 C -0.095 4.095 20 C -0.053 4.053 21 Cl -0.051 7.051 22 N -0.057 5.057 23 N -0.218 5.218 24 H 0.292 0.708 25 H 0.251 0.749 26 H 0.164 0.836 27 H 0.182 0.818 28 H 0.180 0.820 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.460 -14.354 -0.020 30.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.175 4.175 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.181 1.181 6 H -0.186 1.186 7 C -0.480 4.480 8 H 0.091 0.909 9 O -0.150 6.150 10 C 0.344 3.656 11 O -0.448 6.448 12 C -0.215 4.215 13 C -0.038 4.038 14 N -0.082 5.082 15 C 0.012 3.988 16 C -0.133 4.133 17 C -0.100 4.100 18 C -0.104 4.104 19 C -0.114 4.114 20 C -0.082 4.082 21 Cl -0.021 7.021 22 N -0.036 5.036 23 N -0.092 5.092 24 H 0.102 0.898 25 H 0.267 0.733 26 H 0.181 0.819 27 H 0.199 0.801 28 H 0.198 0.802 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 27.922 -13.024 -0.013 30.810 hybrid contribution -1.075 0.226 -0.017 1.098 sum 26.847 -12.797 -0.031 29.741 Atomic orbital electron populations 1.69660 1.07040 1.30326 1.47120 1.25365 0.95872 1.02107 0.94108 0.85274 0.78963 0.76922 0.79908 1.18548 1.18111 1.18629 1.20460 0.77003 0.96359 1.54206 0.90890 1.83640 1.22629 1.31571 1.77141 1.19486 0.86358 0.82130 0.77640 1.90676 1.66275 1.36225 1.51594 1.20556 0.91775 0.90402 1.18817 1.23940 0.81817 1.01779 0.96265 1.47750 1.05316 1.07472 1.47661 1.17953 0.82527 0.89846 1.08466 1.21427 1.03505 0.88008 1.00354 1.21657 0.90583 1.02072 0.95723 1.21843 0.99425 0.93723 0.95430 1.21416 0.97624 0.93735 0.98590 1.21080 0.93303 0.86898 1.06948 1.98445 1.97027 1.10197 1.96472 1.82396 1.12221 0.86127 1.22841 1.74807 0.97512 1.27170 1.09701 0.89797 0.73309 0.81855 0.80115 0.80223 0.81867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.96 13.96 21.63 0.30 -54.66 15 2 C 0.03 1.64 5.49 84.88 0.47 2.11 15 3 Si 0.97 46.96 28.62 68.60 1.96 48.93 15 4 H -0.26 -12.11 7.11 99.48 0.71 -11.41 15 5 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 6 H -0.26 -13.04 7.11 99.48 0.71 -12.33 15 7 C -0.40 -25.65 10.11 67.95 0.69 -24.96 15 8 H 0.07 5.07 7.09 -2.91 -0.02 5.04 15 9 O -0.24 -14.15 8.58 10.51 0.09 -14.05 15 10 C 0.50 25.68 7.90 70.22 0.55 26.24 15 11 O -0.55 -29.85 16.12 19.68 0.32 -29.53 15 12 C -0.08 -3.28 7.06 41.01 0.29 -2.99 15 13 C 0.12 3.41 10.67 84.07 0.90 4.30 15 14 N -0.30 -8.67 3.82 -186.00 -0.71 -9.38 15 15 C 0.10 2.12 6.69 38.10 0.26 2.37 15 16 C -0.11 -1.31 9.47 22.38 0.21 -1.10 15 17 C -0.08 -0.42 10.04 22.26 0.22 -0.20 15 18 C -0.09 -0.40 10.04 22.29 0.22 -0.18 15 19 C -0.09 -1.00 9.83 22.27 0.22 -0.78 15 20 C -0.05 -1.02 6.34 22.43 0.14 -0.88 15 21 Cl -0.05 -1.24 25.94 -2.72 -0.07 -1.31 15 22 N -0.06 -2.06 10.57 37.02 0.39 -1.67 15 23 N -0.22 -9.36 12.39 -49.43 -0.61 -9.97 15 24 H 0.29 16.01 8.31 -92.71 -0.77 15.24 15 25 H 0.25 4.89 7.13 -2.91 -0.02 4.87 15 26 H 0.16 1.23 6.81 -2.91 -0.02 1.21 15 27 H 0.18 -0.34 8.06 -2.91 -0.02 -0.36 15 28 H 0.18 -0.48 8.06 -2.91 -0.02 -0.50 15 29 H 0.16 1.05 8.06 -2.91 -0.02 1.03 15 Total: -1.00 -82.60 288.46 7.06 -75.54 By element: Atomic # 1 Polarization: -9.04 SS G_CDS: 1.22 Total: -7.82 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 4.17 Total: 3.94 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -0.63 Total: -75.68 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: 0.41 Total: -43.59 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.96 Total: 48.93 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.07 Total: -1.31 kcal Total: -82.60 7.06 -75.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040871817.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.263 kcal (2) G-P(sol) polarization free energy of solvation -82.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds