Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31443 * 1 3 3 Si 1.86799 * 119.99651 * 2 1 4 4 H 1.48507 * 109.47338 * 270.00326 * 3 2 1 5 5 H 1.48503 * 109.47290 * 30.00052 * 3 2 1 6 6 H 1.48494 * 109.47292 * 150.00331 * 3 2 1 7 7 C 1.38773 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00122 * 179.97438 * 7 2 1 9 9 O 1.34878 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.34783 * 117.00410 * 180.02562 * 9 7 2 11 11 O 1.21544 * 119.99655 * 359.97438 * 10 9 7 12 12 C 1.47324 * 120.00060 * 179.97438 * 10 9 7 13 13 C 1.36744 * 125.77838 * 179.71465 * 12 10 9 14 14 N 1.35061 * 106.77830 * 180.25947 * 13 12 10 15 15 C 1.40244 * 126.59664 * 180.02562 * 14 13 12 16 16 C 1.38826 * 120.05891 * 359.72728 * 15 14 13 17 17 C 1.38103 * 119.94999 * 179.78923 * 16 15 14 18 18 C 1.38389 * 120.05295 * 0.48612 * 17 16 15 19 19 Cl 1.73598 * 119.94878 * 179.76617 * 18 17 16 20 20 C 1.38394 * 120.10377 * 359.74566 * 18 17 16 21 21 C 1.38102 * 120.04945 * 0.02562 * 20 18 17 22 22 N 1.40205 * 106.79333 * 0.02562 * 14 13 12 23 23 N 1.28740 * 108.41895 * 0.02562 * 22 14 13 24 24 H 0.97001 * 120.00170 * 0.02562 * 1 2 3 25 25 H 1.07997 * 126.60724 * 0.23774 * 13 12 10 26 26 H 1.08003 * 120.02329 * 0.02562 * 16 15 14 27 27 H 1.07999 * 119.97274 * 180.23495 * 17 16 15 28 28 H 1.07998 * 119.97504 * 179.97438 * 20 18 17 29 29 H 1.08001 * 120.02478 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0466 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5459 1.4403 0.6999 7 6 2.0084 -1.2018 -0.0005 8 1 3.0884 -1.2017 -0.0010 9 8 1.3341 -2.3699 -0.0005 10 6 2.0682 -3.5003 -0.0005 11 8 3.2820 -3.4366 -0.0010 12 6 1.3994 -4.8130 0.0000 13 6 2.0249 -6.0289 -0.0054 14 7 1.0534 -6.9671 -0.0085 15 6 1.2341 -8.3579 -0.0138 16 6 2.5152 -8.8926 -0.0222 17 6 2.6906 -10.2624 -0.0230 18 6 1.5905 -11.1020 -0.0257 19 17 1.8141 -12.8235 -0.0329 20 6 0.3123 -10.5713 -0.0222 21 6 0.1320 -9.2022 -0.0166 22 7 -0.1704 -6.2830 -0.0053 23 7 0.0705 -5.0184 -0.0012 24 1 -0.4850 0.8400 -0.0004 25 1 3.0904 -6.2050 -0.0073 26 1 3.3741 -8.2378 -0.0241 27 1 3.6871 -10.6788 -0.0257 28 1 -0.5447 -11.2285 -0.0248 29 1 -0.8656 -8.7885 -0.0135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040871906.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = 26.404749 kcal Electronic energy + Delta-G solvation = -19285.246733 eV Core-core repulsion = 15815.593828 eV Total energy + Delta-G solvation = -3469.652906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.035 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.62246 -40.92255 -40.42114 -37.66386 -37.32312 -35.66592 -34.32998 -32.75019 -32.00910 -30.77929 -27.82694 -25.62809 -25.32799 -23.79939 -22.63854 -21.75952 -20.08138 -19.84038 -18.38320 -17.61671 -17.49291 -16.97196 -16.54653 -16.32911 -16.27982 -16.10264 -15.31591 -14.75829 -14.72174 -14.65446 -13.68556 -13.66693 -13.41451 -13.39063 -13.11153 -12.71686 -12.44404 -12.41445 -12.14263 -12.02493 -11.92811 -11.89925 -11.36142 -10.75885 -10.67622 -10.31317 -9.57391 -8.55301 -6.35176 -0.84255 0.05159 0.35126 0.52274 0.72527 1.04243 1.36419 1.44312 1.55871 2.04581 2.05557 2.39140 2.49342 3.00272 3.05931 3.28100 3.57739 3.72989 3.78695 3.89768 4.01602 4.31095 4.33738 4.67833 4.78279 4.79234 4.98176 5.11565 5.15109 5.23976 5.59946 5.76877 6.44779 6.71495 6.87170 7.68974 8.65193 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.058736 B = 0.002683 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.595119 B =10433.327458 C =10900.060375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.006 4.006 3 Si 1.026 2.974 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.422 4.422 8 H 0.095 0.905 9 O -0.225 6.225 10 C 0.477 3.523 11 O -0.562 6.562 12 C -0.077 4.077 13 C 0.115 3.885 14 N -0.304 5.304 15 C 0.113 3.887 16 C -0.105 4.105 17 C -0.080 4.080 18 C -0.035 4.035 19 Cl -0.053 7.053 20 C -0.085 4.085 21 C -0.099 4.099 22 N -0.074 5.074 23 N -0.212 5.212 24 H 0.280 0.720 25 H 0.251 0.749 26 H 0.169 0.831 27 H 0.175 0.825 28 H 0.166 0.834 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.102 -24.960 -0.078 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.207 4.207 3 Si 0.844 3.156 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.180 1.180 7 C -0.498 4.498 8 H 0.112 0.888 9 O -0.131 6.131 10 C 0.324 3.676 11 O -0.460 6.460 12 C -0.213 4.213 13 C -0.038 4.038 14 N -0.082 5.082 15 C 0.022 3.978 16 C -0.125 4.125 17 C -0.099 4.099 18 C -0.062 4.062 19 Cl -0.024 7.024 20 C -0.104 4.104 21 C -0.119 4.119 22 N -0.053 5.053 23 N -0.086 5.086 24 H 0.090 0.910 25 H 0.267 0.733 26 H 0.186 0.814 27 H 0.192 0.808 28 H 0.184 0.816 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.684 -25.027 -0.076 25.297 hybrid contribution 0.924 0.796 -0.004 1.220 sum 4.608 -24.231 -0.079 24.666 Atomic orbital electron populations 1.70142 1.08073 1.29660 1.45565 1.26756 0.96874 1.02736 0.94296 0.84517 0.77742 0.73720 0.79654 1.18280 1.18589 1.18041 1.21685 0.92683 0.80577 1.54820 0.88774 1.84015 1.39886 1.13964 1.75263 1.19722 0.85024 0.84393 0.78484 1.90616 1.14565 1.87850 1.52965 1.20481 0.89544 0.93217 1.18065 1.23689 0.98409 0.85468 0.96277 1.47765 1.06132 1.06459 1.47887 1.18103 0.96911 0.76618 1.06172 1.21230 0.94731 0.96388 1.00177 1.21214 1.00036 0.90893 0.97730 1.21247 0.95151 0.85987 1.03850 1.98407 1.97401 1.09985 1.96643 1.21162 0.97177 0.93782 0.98256 1.21013 0.98607 0.92762 0.99502 1.81961 1.02561 0.97208 1.23521 1.74855 1.15582 1.08655 1.09511 0.91017 0.73275 0.81380 0.80774 0.81611 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.00 13.67 21.63 0.30 -54.70 15 2 C -0.01 -0.32 5.49 84.88 0.47 0.14 15 3 Si 1.03 43.44 29.55 68.60 2.03 45.47 15 4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 15 5 H -0.26 -10.32 7.11 99.48 0.71 -9.62 15 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 15 7 C -0.42 -26.08 9.65 67.95 0.66 -25.42 15 8 H 0.09 5.69 6.86 -2.91 -0.02 5.67 15 9 O -0.23 -14.10 9.75 10.58 0.10 -14.00 15 10 C 0.48 25.41 7.90 70.21 0.55 25.97 15 11 O -0.56 -30.03 16.11 19.69 0.32 -29.72 15 12 C -0.08 -3.32 7.02 40.78 0.29 -3.03 15 13 C 0.11 3.46 10.61 83.85 0.89 4.34 15 14 N -0.30 -8.58 3.82 -186.79 -0.71 -9.29 15 15 C 0.11 2.24 6.70 38.08 0.25 2.50 15 16 C -0.10 -1.37 9.47 22.38 0.21 -1.15 15 17 C -0.08 -0.80 9.82 22.27 0.22 -0.58 15 18 C -0.03 -0.41 6.32 22.34 0.14 -0.27 15 19 Cl -0.05 -0.59 28.95 -2.72 -0.08 -0.67 15 20 C -0.08 -1.06 9.82 22.27 0.22 -0.84 15 21 C -0.10 -1.72 9.67 22.38 0.22 -1.50 15 22 N -0.07 -2.69 13.12 37.02 0.49 -2.20 15 23 N -0.21 -9.56 12.39 -50.02 -0.62 -10.18 15 24 H 0.28 15.48 8.31 -92.71 -0.77 14.71 15 25 H 0.25 5.01 7.13 -2.91 -0.02 4.99 15 26 H 0.17 1.42 6.81 -2.91 -0.02 1.40 15 27 H 0.17 0.83 8.06 -2.91 -0.02 0.81 15 28 H 0.17 1.36 8.06 -2.91 -0.02 1.34 15 29 H 0.15 2.69 7.73 -2.91 -0.02 2.67 15 Total: -1.00 -79.60 294.09 7.15 -72.45 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 1.22 Total: 2.69 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 4.11 Total: 0.15 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -0.55 Total: -76.38 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: 0.42 Total: -43.72 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -79.60 7.15 -72.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040871906.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.858 kcal (2) G-P(sol) polarization free energy of solvation -79.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds