Wall clock time and date at job start Tue Mar 31 2020 07:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 O 1.42903 * 109.46878 * 179.97438 * 12 10 9 14 14 C 1.35676 * 116.99635 * 179.97438 * 13 12 10 15 15 C 1.38399 * 120.09305 * 0.02562 * 14 13 12 16 16 C 1.38644 * 120.20681 * 179.97438 * 15 14 13 17 17 C 1.39857 * 120.19876 * 0.03095 * 16 15 14 18 18 C 1.37748 * 120.15203 * 0.02864 * 17 16 15 19 19 C 1.40263 * 119.95762 * 359.65140 * 18 17 16 20 20 C 1.46462 * 120.16645 * 180.32325 * 19 18 17 21 21 O 1.21348 * 120.00180 * 180.29063 * 20 19 18 22 22 O 1.36641 * 108.51656 * 179.97438 * 17 16 15 23 23 C 1.43971 * 105.44189 * 342.65905 * 22 17 16 24 24 O 1.36331 * 131.25721 * 180.02562 * 16 15 14 25 25 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 28 28 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 29 29 H 1.07992 * 119.89895 * 359.97438 * 15 14 13 30 30 H 1.08007 * 120.02238 * 180.02562 * 18 17 16 31 31 H 1.08000 * 120.00191 * 0.28675 * 20 19 18 32 32 H 1.08995 * 110.55474 * 268.69090 * 23 22 17 33 33 H 1.08998 * 110.55495 * 145.86043 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 8 2.1727 -5.9490 -0.0016 14 6 1.6541 -7.2028 -0.0016 15 6 0.2823 -7.3863 -0.0017 16 6 -0.2501 -8.6665 -0.0023 17 6 0.5958 -9.7802 -0.0021 18 6 1.9628 -9.6108 -0.0008 19 6 2.5084 -8.3187 -0.0070 20 6 3.9613 -8.1333 -0.0127 21 8 4.4301 -7.0140 -0.0128 22 8 -0.1736 -10.9095 -0.0022 23 6 -1.4842 -10.4804 0.4112 24 8 -1.5417 -9.1029 -0.0029 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0002 27 1 0.6170 -4.9209 0.8886 28 1 0.6176 -4.9205 -0.8913 29 1 -0.3754 -6.5298 -0.0014 30 1 2.6141 -10.4724 -0.0010 31 1 4.6153 -8.9927 -0.0169 32 1 -1.5892 -10.5594 1.4932 33 1 -2.2546 -11.0640 -0.0927 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042875305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:48 Heat of formation + Delta-G solvation = -155.104746 kcal Electronic energy + Delta-G solvation = -22484.960408 eV Core-core repulsion = 18670.267839 eV Total energy + Delta-G solvation = -3814.692569 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.23556 -41.32900 -40.11443 -39.19862 -37.49476 -37.27498 -36.04188 -33.42052 -32.16646 -30.98752 -29.52478 -27.02207 -26.60653 -25.41124 -23.88989 -22.53966 -21.36344 -20.13306 -19.88733 -18.83495 -18.54954 -18.13688 -17.58428 -17.35560 -16.89498 -16.58045 -16.50191 -15.90024 -15.65290 -15.48710 -15.42426 -15.06375 -14.82758 -14.68534 -14.41458 -14.03850 -13.61505 -13.57524 -13.33982 -12.98714 -12.57777 -12.54154 -12.47247 -12.12787 -11.60113 -11.24774 -10.65586 -10.47345 -10.11152 -10.01599 -8.92175 -8.53498 -6.03427 -0.52631 0.10947 1.33522 1.36864 1.40705 1.53421 1.64236 1.85547 1.87946 2.32195 2.40753 2.54669 3.11756 3.13897 3.29678 3.36648 3.70413 3.83367 3.89166 4.03750 4.12510 4.12959 4.23801 4.31079 4.42264 4.55001 4.82833 4.90776 4.99174 5.13121 5.36147 5.83468 5.92879 6.18034 6.50541 6.73332 7.03782 7.40403 7.96774 8.63853 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.024758 B = 0.003439 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.681223 B = 8141.048610 C = 9244.577854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.007 4.007 3 Si 0.996 3.004 4 H -0.275 1.275 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.338 4.338 8 H 0.078 0.922 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.616 6.616 12 C 0.054 3.946 13 O -0.280 6.280 14 C 0.179 3.821 15 C -0.222 4.222 16 C 0.106 3.894 17 C -0.032 4.032 18 C 0.009 3.991 19 C -0.234 4.234 20 C 0.379 3.621 21 O -0.490 6.490 22 O -0.311 6.311 23 C 0.203 3.797 24 O -0.318 6.318 25 H 0.281 0.719 26 H 0.401 0.599 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.154 0.846 30 H 0.196 0.804 31 H 0.166 0.834 32 H 0.108 0.892 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 -23.768 1.213 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.207 4.207 3 Si 0.819 3.181 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.197 5.197 10 C 0.220 3.780 11 O -0.502 6.502 12 C -0.025 4.025 13 O -0.190 6.190 14 C 0.131 3.869 15 C -0.241 4.241 16 C 0.060 3.940 17 C -0.076 4.076 18 C -0.009 4.009 19 C -0.236 4.236 20 C 0.240 3.760 21 O -0.365 6.365 22 O -0.228 6.228 23 C 0.093 3.907 24 O -0.233 6.233 25 H 0.090 0.910 26 H 0.235 0.765 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.172 0.828 30 H 0.213 0.787 31 H 0.182 0.818 32 H 0.126 0.874 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.860 -23.065 1.111 23.597 hybrid contribution -0.878 1.003 0.032 1.333 sum -5.738 -22.062 1.144 22.825 Atomic orbital electron populations 1.69664 1.06772 1.29607 1.49419 1.26062 0.96610 1.02358 0.95709 0.84835 0.77944 0.76751 0.78584 1.19982 1.19254 1.19234 1.19711 0.92784 0.83621 1.50616 0.90370 1.41701 1.09451 1.04019 1.64504 1.20249 0.88131 0.85647 0.83944 1.90586 1.15880 1.87654 1.56122 1.22512 0.91100 0.83646 1.05193 1.86421 1.34552 1.11675 1.86362 1.19313 0.91199 0.84950 0.91461 1.20098 0.93571 0.96269 1.14194 1.19824 0.83556 0.94103 0.96537 1.19639 0.93565 0.84126 1.10262 1.20256 0.90618 0.96365 0.93648 1.20454 0.97319 0.90449 1.15422 1.24501 0.88403 0.93321 0.69824 1.90781 1.78692 1.31456 1.35549 1.87382 1.21545 1.28210 1.85708 1.26224 0.85177 0.77111 1.02207 1.87337 1.22926 1.29216 1.83850 0.90957 0.76452 0.87085 0.87232 0.82793 0.78734 0.81782 0.87431 0.81681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.85 13.05 21.66 0.28 -48.57 16 2 C -0.01 -0.36 5.50 84.92 0.47 0.10 16 3 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 6 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.34 -19.62 9.68 84.04 0.81 -18.81 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.56 -29.32 5.29 -306.98 -1.62 -30.94 16 10 C 0.43 22.20 7.86 87.66 0.69 22.89 16 11 O -0.62 -38.14 16.08 15.96 0.26 -37.88 16 12 C 0.05 2.00 5.22 71.24 0.37 2.37 16 13 O -0.28 -11.21 7.73 -60.97 -0.47 -11.68 16 14 C 0.18 5.47 6.70 22.87 0.15 5.63 16 15 C -0.22 -5.73 9.04 22.41 0.20 -5.53 16 16 C 0.11 2.41 7.15 22.76 0.16 2.57 16 17 C -0.03 -0.62 7.13 22.55 0.16 -0.46 16 18 C 0.01 0.16 9.80 22.65 0.22 0.38 16 19 C -0.23 -5.69 5.88 -20.08 -0.12 -5.81 16 20 C 0.38 9.41 11.42 69.96 0.80 10.21 16 21 O -0.49 -19.55 15.97 17.79 0.28 -19.26 16 22 O -0.31 -5.19 11.41 -77.72 -0.89 -6.07 16 23 C 0.20 2.35 8.88 113.37 1.01 3.36 16 24 O -0.32 -6.33 11.39 -74.08 -0.84 -7.18 16 25 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 26 H 0.40 19.36 7.90 -92.71 -0.73 18.62 16 27 H 0.11 3.41 7.66 -2.39 -0.02 3.39 16 28 H 0.11 3.40 7.66 -2.39 -0.02 3.38 16 29 H 0.15 3.63 6.28 -2.91 -0.02 3.61 16 30 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.17 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -84.25 303.38 4.41 -79.84 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.46 Total: 19.67 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 4.93 Total: 16.91 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.34 Total: -79.51 kcal Atomic # 8 Polarization: -80.42 SS G_CDS: -1.66 Total: -82.08 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -84.25 4.41 -79.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042875305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.264 kcal (2) G-P(sol) polarization free energy of solvation -84.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds