Wall clock time and date at job start Tue Mar 31 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00477 * 2 1 4 4 H 1.48497 * 109.47232 * 270.00313 * 3 2 1 5 5 H 1.48507 * 109.46601 * 29.99670 * 3 2 1 6 6 H 1.48502 * 109.47492 * 149.99497 * 3 2 1 7 7 C 1.37885 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99487 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00351 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47399 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47443 * 180.02562 * 10 9 7 12 12 C 1.34800 * 117.00370 * 180.02562 * 11 10 9 13 13 O 1.21562 * 119.99874 * 359.97438 * 12 11 10 14 14 C 1.47140 * 120.00343 * 180.02562 * 12 11 10 15 15 C 1.36249 * 122.55600 * 179.97438 * 14 12 11 16 16 S 1.70999 * 109.06464 * 179.74530 * 15 14 12 17 17 C 1.75965 * 90.66458 * 0.34280 * 16 15 14 18 18 C 1.47139 * 125.23019 * 179.91855 * 17 16 15 19 19 C 1.36239 * 125.95638 * 359.68845 * 18 17 16 20 20 C 1.40772 * 106.72296 * 180.02562 * 19 18 17 21 21 C 1.34844 * 107.06894 * 359.97438 * 20 19 18 22 22 O 1.34235 * 108.72090 * 0.26472 * 21 20 19 23 23 N 1.30038 * 109.54261 * 359.64970 * 17 16 15 24 24 H 0.97004 * 120.00147 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47130 * 60.00076 * 9 7 2 26 26 H 1.09000 * 109.46913 * 300.00242 * 9 7 2 27 27 H 1.09005 * 109.47066 * 59.99855 * 10 9 7 28 28 H 1.09003 * 109.46840 * 300.00355 * 10 9 7 29 29 H 1.08002 * 125.46564 * 0.02562 * 15 14 12 30 30 H 1.08002 * 126.64051 * 0.02823 * 19 18 17 31 31 H 1.07998 * 126.46180 * 180.02562 * 20 19 18 32 32 H 1.08002 * 125.63423 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6366 0.0010 11 8 5.4735 -2.6367 0.0022 12 6 6.0854 -3.8378 0.0017 13 8 5.4234 -4.8573 0.0008 14 6 7.5548 -3.9149 0.0034 15 6 8.2268 -5.1001 0.0035 16 16 9.9083 -4.7888 -0.0015 17 6 9.6081 -3.0550 0.0070 18 6 10.6475 -2.0136 0.0092 19 6 11.9932 -2.2265 0.0111 20 6 12.6039 -0.9582 0.0134 21 6 11.6143 -0.0423 0.0123 22 8 10.4346 -0.6828 0.0153 23 7 8.3263 -2.8354 0.0053 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8751 -0.6805 -0.8888 27 1 3.6584 -3.1503 -0.8893 28 1 3.6577 -3.1507 0.8907 29 1 7.7707 -6.0791 0.0020 30 1 12.4944 -3.1832 0.0108 31 1 13.6650 -0.7568 0.0149 32 1 11.7487 1.0293 0.0140 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044871680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:02 Heat of formation + Delta-G solvation = -47.693170 kcal Electronic energy + Delta-G solvation = -19504.461189 eV Core-core repulsion = 16137.179207 eV Total energy + Delta-G solvation = -3367.281983 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.53845 -41.86062 -40.28519 -37.83617 -35.44277 -34.18888 -33.05303 -32.70434 -30.08689 -28.13805 -26.58076 -24.68403 -22.90795 -22.68541 -21.86233 -20.84079 -20.03882 -19.14324 -18.61174 -17.78346 -17.70532 -17.58764 -17.19197 -16.39850 -16.28983 -15.84153 -15.08331 -14.92082 -14.77856 -14.44648 -13.96671 -13.85520 -13.46627 -13.39935 -13.28732 -13.13036 -12.59408 -12.55364 -11.88015 -11.83912 -11.58836 -11.52982 -11.37064 -11.15761 -10.90946 -10.85073 -10.49370 -9.14320 -8.38367 -6.46194 -1.04911 -0.23386 0.07662 0.16825 1.05758 1.34193 1.35415 1.49181 1.62664 1.63125 1.99592 2.07597 2.30849 2.70446 2.96067 3.49576 3.80880 3.96463 3.98515 4.09957 4.10149 4.13217 4.43717 4.56284 4.73717 4.91924 4.94382 5.00473 5.21246 5.32198 5.45601 5.49932 5.97070 6.11621 6.21465 6.58376 6.59076 7.18837 8.77578 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.003678 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.974291 B = 7610.972845 C = 9257.494002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.541 4.541 8 H 0.040 0.960 9 C -0.003 4.003 10 C 0.091 3.909 11 O -0.349 6.349 12 C 0.534 3.466 13 O -0.523 6.523 14 C 0.000 4.000 15 C -0.210 4.210 16 S 0.368 5.632 17 C 0.077 3.923 18 C 0.004 3.996 19 C -0.148 4.148 20 C -0.215 4.215 21 C -0.017 4.017 22 O -0.187 6.187 23 N -0.453 5.453 24 H 0.272 0.728 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.220 0.780 30 H 0.186 0.814 31 H 0.190 0.810 32 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.089 -6.946 0.001 34.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.579 4.579 8 H 0.059 0.941 9 C -0.040 4.040 10 C 0.018 3.982 11 O -0.264 6.264 12 C 0.377 3.623 13 O -0.414 6.414 14 C -0.135 4.135 15 C -0.353 4.353 16 S 0.627 5.373 17 C -0.197 4.197 18 C -0.049 4.049 19 C -0.171 4.171 20 C -0.233 4.233 21 C -0.087 4.087 22 O -0.083 6.083 23 N -0.169 5.169 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.237 0.763 30 H 0.204 0.796 31 H 0.207 0.793 32 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 34.036 -7.125 -0.004 34.773 hybrid contribution -1.805 0.745 -0.007 1.953 sum 32.231 -6.380 -0.010 32.856 Atomic orbital electron populations 1.70020 1.08098 1.28672 1.51215 1.25872 0.95657 1.03303 0.93393 0.85662 0.79343 0.78151 0.79592 1.18721 1.19990 1.17628 1.21065 0.90252 0.94045 1.52540 0.94124 1.19452 0.94518 0.91884 0.98174 1.23095 0.73325 1.00106 1.01678 1.86661 1.24933 1.32152 1.82694 1.20390 0.87877 0.81649 0.72335 1.90833 1.66532 1.36403 1.47590 1.19146 0.91499 0.89000 1.13838 1.27438 1.00869 1.03939 1.03036 1.83109 0.97684 0.95471 1.61045 1.24848 0.90699 0.97478 1.06677 1.19178 0.91832 0.80582 1.13320 1.22259 0.89795 1.01853 1.03194 1.22192 1.02248 0.90847 1.08060 1.25246 0.80686 1.00741 1.02053 1.84218 1.35286 1.17946 1.70879 1.67134 1.03528 1.32056 1.14146 0.91901 0.95098 0.95184 0.91734 0.91775 0.76334 0.79639 0.79305 0.74355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.69 13.96 21.45 0.30 -59.39 16 2 C 0.02 0.97 5.47 84.66 0.46 1.44 16 3 Si 0.95 45.69 27.47 68.60 1.88 47.57 16 4 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.25 -11.68 6.54 99.48 0.65 -11.03 16 7 C -0.54 -32.65 9.66 25.60 0.25 -32.40 16 8 H 0.04 2.65 7.99 -2.91 -0.02 2.63 16 9 C 0.00 -0.14 4.42 29.85 0.13 -0.01 16 10 C 0.09 4.28 5.42 71.98 0.39 4.67 16 11 O -0.35 -15.48 10.14 -57.12 -0.58 -16.06 16 12 C 0.53 20.93 7.94 70.16 0.56 21.49 16 13 O -0.52 -21.41 16.47 19.64 0.32 -21.09 16 14 C 0.00 0.01 6.68 40.89 0.27 0.28 16 15 C -0.21 -4.30 10.62 67.36 0.72 -3.58 16 16 S 0.37 4.73 22.91 -56.49 -1.29 3.43 16 17 C 0.08 1.83 7.45 87.30 0.65 2.48 16 18 C 0.00 0.08 7.24 24.14 0.17 0.25 16 19 C -0.15 -1.90 10.62 22.42 0.24 -1.66 16 20 C -0.21 -2.24 10.88 22.11 0.24 -2.00 16 21 C -0.02 -0.24 12.08 67.04 0.81 0.57 16 22 O -0.19 -4.55 10.67 -6.56 -0.07 -4.62 16 23 N -0.45 -14.79 10.58 -179.51 -1.90 -16.69 16 24 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 25 H 0.03 1.58 7.20 -2.38 -0.02 1.56 16 26 H 0.03 1.51 7.57 -2.39 -0.02 1.50 16 27 H 0.06 3.01 8.14 -2.38 -0.02 2.99 16 28 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.22 3.44 8.01 -2.91 -0.02 3.41 16 30 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 31 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 32 H 0.24 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -81.15 310.95 4.66 -76.50 By element: Atomic # 1 Polarization: -2.26 SS G_CDS: 1.10 Total: -1.16 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 4.89 Total: -8.48 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -1.60 Total: -76.09 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.33 Total: -41.77 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.57 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.29 Total: 3.43 kcal Total: -81.15 4.66 -76.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044871680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.803 kcal (2) G-P(sol) polarization free energy of solvation -81.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds