Wall clock time and date at job start Tue Mar 31 2020 06:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00275 * 2 1 4 4 H 1.48497 * 109.47595 * 270.00288 * 3 2 1 5 5 H 1.48500 * 109.47035 * 30.00605 * 3 2 1 6 6 H 1.48504 * 109.47026 * 150.00322 * 3 2 1 7 7 C 1.37884 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99613 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99822 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46831 * 179.97438 * 9 7 2 11 11 O 1.45208 * 109.47013 * 180.02562 * 10 9 7 12 12 C 1.34847 * 116.99869 * 180.02562 * 11 10 9 13 13 O 1.21576 * 119.99887 * 359.97438 * 12 11 10 14 14 C 1.46887 * 119.99934 * 179.97438 * 12 11 10 15 15 C 1.35956 * 125.44244 * 179.97438 * 14 12 11 16 16 C 1.41548 * 107.72685 * 180.02562 * 15 14 12 17 17 C 1.40133 * 133.34839 * 180.31877 * 16 15 14 18 18 C 1.36520 * 119.82412 * 180.18754 * 17 16 15 19 19 Cl 1.73599 * 119.71085 * 179.73430 * 18 17 16 20 20 C 1.39053 * 120.58660 * 359.45437 * 18 17 16 21 21 C 1.37662 * 120.63910 * 0.28004 * 20 18 17 22 22 C 1.39232 * 119.82808 * 359.97438 * 21 20 18 23 23 N 1.37508 * 133.15255 * 180.02562 * 22 21 20 24 24 H 0.97007 * 125.61390 * 0.02562 * 23 22 21 25 25 H 0.97006 * 119.99415 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47334 * 59.99636 * 9 7 2 27 27 H 1.09000 * 109.46967 * 299.99265 * 9 7 2 28 28 H 1.08994 * 109.47561 * 59.99458 * 10 9 7 29 29 H 1.09000 * 109.46794 * 299.99431 * 10 9 7 30 30 H 1.07997 * 126.13306 * 0.04204 * 15 14 12 31 31 H 1.08001 * 120.09116 * 359.94455 * 17 16 15 32 32 H 1.07993 * 119.67862 * 180.29834 * 20 18 17 33 33 H 1.07998 * 120.08908 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6367 -0.0001 11 8 5.4735 -2.6367 0.0011 12 6 6.0856 -3.8383 0.0006 13 8 5.4234 -4.8578 -0.0003 14 6 7.5524 -3.9152 0.0012 15 6 8.2817 -5.0626 0.0013 16 6 9.6508 -4.7031 0.0024 17 6 10.8400 -5.4444 -0.0026 18 6 12.0427 -4.7986 0.0042 19 17 13.5141 -5.7199 0.0049 20 6 12.0998 -3.4092 0.0048 21 6 10.9451 -2.6596 0.0043 22 6 9.7065 -3.2957 0.0026 23 7 8.4117 -2.8329 0.0013 24 1 8.1451 -1.9002 0.0009 25 1 -0.4849 0.8401 0.0004 26 1 3.8745 -0.6809 0.8905 27 1 3.8751 -0.6798 -0.8895 28 1 3.6584 -3.1504 -0.8902 29 1 3.6577 -3.1506 0.8897 30 1 7.8872 -6.0679 0.0003 31 1 10.8052 -6.5239 -0.0079 32 1 13.0592 -2.9134 0.0053 33 1 10.9998 -1.5811 0.0051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044951169.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:25 Heat of formation + Delta-G solvation = -62.013528 kcal Electronic energy + Delta-G solvation = -19410.605679 eV Core-core repulsion = 16040.659012 eV Total energy + Delta-G solvation = -3369.946666 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.77790 -41.22108 -38.48735 -37.82618 -36.86482 -35.42494 -33.38443 -32.87530 -30.64314 -30.25549 -27.53600 -25.47531 -23.31063 -22.86351 -22.49440 -21.46801 -19.74491 -19.07622 -18.48245 -17.73505 -17.57598 -17.30013 -16.35019 -15.90636 -15.90058 -15.29744 -15.07125 -14.94157 -14.80856 -14.42741 -14.10165 -13.84235 -13.40422 -13.37365 -13.22428 -12.58760 -12.54296 -12.37402 -11.87691 -11.86365 -11.83334 -11.76364 -11.57391 -11.51294 -11.10302 -10.83045 -9.36639 -8.95713 -8.35798 -6.44420 -0.55415 0.32043 0.74747 1.19361 1.36179 1.37200 1.39101 1.50821 1.88178 1.89747 2.32649 2.64663 2.99032 3.48935 3.55655 3.90730 4.04221 4.11865 4.13306 4.18595 4.24580 4.43415 4.57512 4.72510 4.88584 4.91499 5.07030 5.23674 5.25052 5.31488 5.34533 5.42959 5.49166 5.77179 6.13488 6.28445 6.49066 6.62156 7.20545 8.80164 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.037603 B = 0.002623 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.440454 B =10673.847415 C =11397.840635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.242 1.242 7 C -0.543 4.543 8 H 0.036 0.964 9 C -0.003 4.003 10 C 0.094 3.906 11 O -0.357 6.357 12 C 0.527 3.473 13 O -0.521 6.521 14 C 0.023 3.977 15 C -0.090 4.090 16 C -0.131 4.131 17 C -0.050 4.050 18 C -0.069 4.069 19 Cl -0.070 7.070 20 C -0.073 4.073 21 C -0.114 4.114 22 C 0.115 3.885 23 N -0.557 5.557 24 H 0.437 0.563 25 H 0.270 0.730 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.169 0.831 31 H 0.149 0.851 32 H 0.164 0.836 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.132 -5.889 0.015 30.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.165 1.165 7 C -0.581 4.581 8 H 0.054 0.946 9 C -0.040 4.040 10 C 0.021 3.979 11 O -0.274 6.274 12 C 0.372 3.628 13 O -0.411 6.411 14 C -0.085 4.085 15 C -0.117 4.117 16 C -0.136 4.136 17 C -0.069 4.069 18 C -0.096 4.096 19 Cl -0.041 7.041 20 C -0.093 4.093 21 C -0.134 4.134 22 C 0.003 3.997 23 N -0.161 5.161 24 H 0.278 0.722 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.186 0.814 31 H 0.167 0.833 32 H 0.181 0.819 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 29.725 -5.998 0.017 30.324 hybrid contribution -0.851 0.684 -0.019 1.092 sum 28.874 -5.314 -0.002 29.359 Atomic orbital electron populations 1.70046 1.08370 1.28635 1.51253 1.25976 0.95687 1.03653 0.93455 0.85587 0.79567 0.77603 0.79485 1.18832 1.20790 1.16520 1.21102 0.90695 0.93831 1.52492 0.94578 1.19469 0.94165 0.91755 0.98618 1.23069 0.72940 1.00156 1.01687 1.86513 1.25369 1.32021 1.83470 1.20306 0.87694 0.81921 0.72882 1.90890 1.66198 1.36795 1.47178 1.18906 0.85859 0.88918 1.14857 1.21110 0.90940 0.97897 1.01719 1.18056 0.93070 0.92671 1.09821 1.20376 0.88635 1.00927 0.97007 1.20404 0.87304 0.92674 1.09251 1.98373 1.34592 1.73897 1.97214 1.21090 0.99537 0.91073 0.97613 1.20359 0.87378 1.01473 1.04186 1.18723 0.85627 0.93465 1.01879 1.41960 1.03473 1.08896 1.61794 0.72209 0.92057 0.94472 0.94566 0.91926 0.91952 0.81362 0.83307 0.81870 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 2 C 0.01 0.59 5.47 84.66 0.46 1.05 16 3 Si 0.96 42.17 27.47 68.60 1.88 44.05 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 7 C -0.54 -30.69 9.66 25.60 0.25 -30.45 16 8 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 9 C 0.00 -0.12 4.42 29.85 0.13 0.01 16 10 C 0.09 3.87 5.42 71.98 0.39 4.26 16 11 O -0.36 -12.41 10.23 -57.60 -0.59 -13.00 16 12 C 0.53 17.18 7.94 70.09 0.56 17.74 16 13 O -0.52 -19.74 16.63 19.59 0.33 -19.41 16 14 C 0.02 0.58 6.99 39.88 0.28 0.86 16 15 C -0.09 -2.04 10.53 22.56 0.24 -1.80 16 16 C -0.13 -2.59 6.16 -21.36 -0.13 -2.72 16 17 C -0.05 -0.82 9.82 22.33 0.22 -0.60 16 18 C -0.07 -1.01 6.28 22.06 0.14 -0.87 16 19 Cl -0.07 -0.96 28.93 -2.72 -0.08 -1.03 16 20 C -0.07 -0.87 9.79 22.33 0.22 -0.65 16 21 C -0.11 -1.44 10.07 22.37 0.23 -1.21 16 22 C 0.12 2.10 7.25 39.13 0.28 2.38 16 23 N -0.56 -11.22 6.19 -177.22 -1.10 -12.32 16 24 H 0.44 7.23 8.96 -92.70 -0.83 6.40 16 25 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 26 H 0.04 1.63 7.20 -2.39 -0.02 1.61 16 27 H 0.04 1.56 7.57 -2.39 -0.02 1.55 16 28 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -67.47 312.50 4.28 -63.19 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.27 Total: 8.08 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 3.26 Total: -12.00 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -0.80 Total: -69.88 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.26 Total: -32.41 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.03 kcal Total: -67.47 4.28 -63.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044951169.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.181 kcal (2) G-P(sol) polarization free energy of solvation -67.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds