Wall clock time and date at job start Tue Mar 31 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.34906 * 126.33320 * 2 1 4 4 C 1.34545 * 107.67927 * 179.97438 * 3 2 1 5 5 C 1.47018 * 125.75744 * 180.02562 * 4 3 2 6 6 C 1.36174 * 125.33615 * 359.97438 * 5 4 3 7 7 C 1.37727 * 114.44425 * 179.97438 * 6 5 4 8 8 C 1.33719 * 115.19244 * 0.02562 * 7 6 5 9 9 S 1.75825 * 109.95861 * 359.75326 * 8 7 6 10 10 N 1.31522 * 108.47938 * 359.97438 * 4 3 2 11 11 C 1.34214 * 108.61424 * 359.97438 * 10 4 3 12 12 C 1.50699 * 126.05269 * 180.02562 * 11 10 4 13 13 C 1.50701 * 109.46771 * 89.97992 * 12 11 10 14 14 O 1.21207 * 120.00489 * 359.97438 * 13 12 11 15 15 O 1.34312 * 120.00167 * 180.02562 * 13 12 11 16 16 C 1.34918 * 117.00347 * 179.97438 * 15 13 12 17 17 H 1.07991 * 120.00054 * 0.02562 * 16 15 13 18 18 C 1.38758 * 120.00124 * 179.97438 * 16 15 13 19 19 N 1.31442 * 119.99992 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00150 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46915 * 89.99865 * 20 18 16 22 22 H 1.48497 * 109.47579 * 210.00137 * 20 18 16 23 23 H 1.48501 * 109.47010 * 330.00193 * 20 18 16 24 24 H 1.08994 * 109.47579 * 0.02692 * 1 2 3 25 25 H 1.09005 * 109.46866 * 120.03123 * 1 2 3 26 26 H 1.08999 * 109.47451 * 240.02187 * 1 2 3 27 27 H 1.08006 * 122.77988 * 0.02562 * 6 5 4 28 28 H 1.08001 * 122.40352 * 180.02562 * 7 6 5 29 29 H 1.07995 * 125.01429 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.47612 * 209.97366 * 12 11 10 31 31 H 1.08993 * 109.47342 * 329.98090 * 12 11 10 32 32 H 0.97000 * 120.00071 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3062 1.0868 0.0000 4 6 3.5810 0.6564 0.0006 5 6 4.7766 1.5120 0.0013 6 6 4.7706 2.8738 0.0010 7 6 6.0219 3.4492 0.0024 8 6 7.0445 2.5877 0.0033 9 16 6.4388 0.9371 0.0095 10 7 3.5770 -0.6588 0.0015 11 6 2.3037 -1.0833 0.0021 12 6 1.8478 -2.5196 0.0037 13 6 1.6964 -2.9969 1.4251 14 8 1.9355 -2.2454 2.3455 15 8 1.2974 -4.2554 1.6721 16 6 1.1827 -4.6188 2.9663 17 1 1.4077 -3.9090 3.7485 18 6 0.7747 -5.9043 3.2925 19 7 0.5003 -6.7682 2.3405 20 14 0.6151 -6.4073 5.0843 21 1 -0.7616 -6.1169 5.5593 22 1 0.8882 -7.8609 5.2167 23 1 1.5920 -5.6437 5.9016 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5143 -0.8898 26 1 -0.3634 -0.5135 0.8901 27 1 3.8599 3.4545 0.0006 28 1 6.1667 4.5195 0.0028 29 1 8.0883 2.8649 0.0048 30 1 0.8893 -2.5972 -0.5095 31 1 2.5858 -3.1357 -0.5098 32 1 0.2154 -7.6669 2.5685 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047481002.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:54 Heat of formation + Delta-G solvation = -23.633160 kcal Electronic energy + Delta-G solvation = -19972.614490 eV Core-core repulsion = 16606.375828 eV Total energy + Delta-G solvation = -3366.238662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.13219 -38.92651 -37.85626 -35.56121 -34.58099 -33.12567 -32.11782 -30.16695 -29.61724 -26.25216 -25.15551 -24.03066 -22.09917 -21.43420 -20.15744 -18.86805 -18.05413 -17.70025 -16.93958 -16.21450 -16.16836 -15.52758 -14.83006 -14.44781 -14.39582 -13.99578 -13.77472 -13.42470 -13.06088 -12.88431 -12.81992 -12.46883 -12.36385 -12.19896 -11.84778 -11.60554 -11.10166 -11.03235 -10.97526 -10.43011 -10.37210 -10.31791 -9.79269 -9.57385 -8.99083 -8.70424 -8.55439 -7.97337 -6.38690 -4.06435 0.29387 1.16902 1.70776 1.77720 2.39786 2.81310 2.99694 3.12902 3.21046 3.27465 3.55382 3.84909 4.03111 4.67099 4.80021 4.85984 4.94397 5.09324 5.14048 5.22410 5.30651 5.48994 5.55321 5.69789 5.78541 5.92610 5.96048 6.12342 6.15079 6.17815 6.32178 6.83293 7.42253 7.80358 7.97977 8.74264 9.10283 9.87688 10.79375 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023821 B = 0.003477 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.159405 B = 8052.133278 C = 8668.339313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.024 4.024 3 O -0.191 6.191 4 C 0.241 3.759 5 C -0.121 4.121 6 C -0.108 4.108 7 C -0.136 4.136 8 C -0.224 4.224 9 S 0.213 5.787 10 N -0.448 5.448 11 C 0.023 3.977 12 C -0.026 4.026 13 C 0.402 3.598 14 O -0.548 6.548 15 O -0.214 6.214 16 C -0.381 4.381 17 H 0.095 0.905 18 C 0.042 3.958 19 N -0.866 5.866 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.267 1.267 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.170 0.830 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.689 17.527 -8.156 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.078 4.078 3 O -0.079 6.079 4 C 0.037 3.963 5 C -0.239 4.239 6 C -0.142 4.142 7 C -0.166 4.166 8 C -0.361 4.361 9 S 0.479 5.521 10 N -0.177 5.177 11 C -0.099 4.099 12 C -0.064 4.064 13 C 0.248 3.752 14 O -0.445 6.445 15 O -0.121 6.121 16 C -0.457 4.457 17 H 0.112 0.888 18 C -0.162 4.162 19 N -0.503 5.503 20 Si 0.767 3.233 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.191 1.191 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.188 0.812 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.918 15.694 -7.923 19.281 hybrid contribution -1.306 1.554 0.930 2.233 sum 6.612 17.248 -6.993 19.751 Atomic orbital electron populations 1.20353 0.83516 1.04144 1.04546 1.23264 0.94785 0.83576 1.06183 1.84442 1.16854 1.36046 1.70564 1.22044 0.82007 0.88106 1.04098 1.21445 0.93423 0.94661 1.14417 1.20626 0.99583 0.91947 1.02013 1.19938 0.91031 1.01261 1.04402 1.26071 1.03705 0.96705 1.09642 1.84592 0.93688 1.04966 1.68892 1.70626 1.22875 1.07701 1.16498 1.20740 0.87766 0.96134 1.05217 1.19327 1.03692 0.88855 0.94536 1.22833 0.79214 0.82619 0.90557 1.90576 1.50798 1.56511 1.46619 1.83866 1.70883 1.26488 1.30906 1.21205 1.46803 0.97626 0.80070 0.88784 1.25314 0.96127 0.94611 1.00116 1.69991 1.42584 1.05358 1.32397 0.85690 0.79011 0.77948 0.80655 1.19909 1.20315 1.19143 0.90380 0.89002 0.88639 0.83579 0.83724 0.81241 0.87196 0.87096 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 9.94 36.00 0.36 -0.49 16 2 C -0.02 -0.41 7.38 -35.64 -0.26 -0.67 16 3 O -0.19 -3.22 10.79 3.37 0.04 -3.18 16 4 C 0.24 4.20 8.09 -14.13 -0.11 4.09 16 5 C -0.12 -1.71 6.46 -36.77 -0.24 -1.95 16 6 C -0.11 -1.21 10.15 -40.51 -0.41 -1.62 16 7 C -0.14 -1.22 10.15 -41.35 -0.42 -1.64 16 8 C -0.22 -1.97 11.21 29.15 0.33 -1.64 16 9 S 0.21 2.55 23.30 -107.50 -2.50 0.04 16 10 N -0.45 -8.80 11.33 -8.12 -0.09 -8.89 16 11 C 0.02 0.45 5.59 -82.88 -0.46 -0.02 16 12 C -0.03 -0.49 6.14 -29.03 -0.18 -0.67 16 13 C 0.40 10.17 7.90 36.01 0.28 10.45 16 14 O -0.55 -15.36 15.27 -19.05 -0.29 -15.66 16 15 O -0.21 -6.19 9.75 -20.70 -0.20 -6.39 16 16 C -0.38 -11.43 9.65 30.92 0.30 -11.13 16 17 H 0.09 2.86 6.86 -52.49 -0.36 2.50 16 18 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 19 N -0.87 -25.50 13.67 55.48 0.76 -24.74 16 20 Si 0.94 21.58 29.55 -169.99 -5.02 16.56 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 28 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.11 1.71 7.88 -51.93 -0.41 1.30 16 31 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 32 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 312.90 15.07 4.72 4.72 Total: -1.00 -36.34 312.90 -6.38 -42.72 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -2.86 Total: -1.00 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -0.92 Total: -4.18 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.67 Total: -33.63 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.46 Total: -25.22 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.50 Total: 0.04 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.34 -6.38 -42.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047481002.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.088 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds