Wall clock time and date at job start Tue Mar 31 2020 06:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00077 * 2 1 4 4 H 1.48506 * 109.47059 * 270.00069 * 3 2 1 5 5 H 1.48503 * 109.47389 * 29.99799 * 3 2 1 6 6 H 1.48505 * 109.47163 * 149.99976 * 3 2 1 7 7 C 1.37881 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99512 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46828 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.46978 * 179.97438 * 10 9 7 12 12 C 1.34851 * 116.99712 * 179.97438 * 11 10 9 13 13 O 1.21569 * 120.00270 * 0.02562 * 12 11 10 14 14 C 1.46858 * 119.99843 * 179.97438 * 12 11 10 15 15 C 1.35963 * 125.44546 * 180.02562 * 14 12 11 16 16 C 1.41531 * 107.72833 * 179.97438 * 15 14 12 17 17 C 1.40151 * 133.34105 * 179.97438 * 16 15 14 18 18 C 1.36396 * 119.84972 * 179.70132 * 17 16 15 19 19 C 1.39078 * 120.60393 * 0.55887 * 18 17 16 20 20 Cl 1.73599 * 119.69312 * 179.73849 * 19 18 17 21 21 C 1.37805 * 120.61721 * 359.45657 * 19 18 17 22 22 C 1.39191 * 119.80137 * 0.25481 * 21 19 18 23 23 N 1.37485 * 133.14300 * 180.02562 * 22 21 19 24 24 H 0.96993 * 125.61239 * 0.02562 * 23 22 21 25 25 H 0.97004 * 119.99896 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46920 * 60.00314 * 9 7 2 27 27 H 1.09001 * 109.47193 * 299.99808 * 9 7 2 28 28 H 1.09002 * 109.47201 * 59.99885 * 10 9 7 29 29 H 1.09001 * 109.46963 * 299.99809 * 10 9 7 30 30 H 1.07995 * 126.13583 * 0.02562 * 15 14 12 31 31 H 1.08000 * 120.07208 * 359.97438 * 17 16 15 32 32 H 1.07996 * 119.69806 * 180.27048 * 18 17 16 33 33 H 1.07997 * 120.09556 * 180.28360 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 8 1.5191 -4.9196 0.0024 12 6 2.2536 -6.0505 0.0031 13 8 3.4676 -5.9869 0.0035 14 6 1.5869 -7.3590 0.0043 15 6 2.2158 -8.5644 0.0055 16 6 1.2200 -9.5701 0.0070 17 6 1.2675 -10.9708 0.0081 18 6 0.1082 -11.6894 0.0157 19 6 -1.1243 -11.0450 0.0105 20 17 -2.5851 -11.9830 0.0134 21 6 -1.1968 -9.6689 0.0090 22 6 -0.0270 -8.9145 0.0072 23 7 0.2195 -7.5620 0.0060 24 1 -0.4550 -6.8650 0.0064 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8711 -3.6040 0.8923 29 1 2.8725 -3.6047 -0.8877 30 1 3.2837 -8.7256 0.0061 31 1 2.2199 -11.4800 0.0075 32 1 0.1477 -12.7686 0.0210 33 1 -2.1583 -9.1772 0.0096 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047737330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:19 Heat of formation + Delta-G solvation = -48.711757 kcal Electronic energy + Delta-G solvation = -19364.500842 eV Core-core repulsion = 15995.130983 eV Total energy + Delta-G solvation = -3369.369858 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.85104 -39.82128 -37.71266 -36.35935 -36.16424 -33.44004 -32.47395 -30.62388 -29.85811 -29.18074 -25.65043 -24.16767 -22.57949 -21.76868 -21.00704 -20.32765 -18.57507 -17.76811 -16.61452 -16.33353 -16.22446 -15.93100 -15.08665 -14.87547 -14.65613 -14.47234 -14.08526 -13.53437 -13.48048 -12.97693 -12.95423 -12.45598 -12.33886 -11.67617 -11.39862 -11.26122 -11.19447 -11.17072 -10.87045 -10.84622 -10.54926 -10.14413 -9.79722 -9.75650 -9.39723 -8.59652 -8.51910 -8.11296 -6.17998 -4.22777 0.31452 1.17721 1.69976 1.75355 2.64193 2.98314 3.06476 3.24074 3.30529 3.34538 3.43304 4.30297 4.33010 4.67187 4.78383 4.84997 4.94039 5.04975 5.19031 5.22716 5.51505 5.56624 5.85851 5.92398 5.96299 6.03279 6.17272 6.27983 6.49991 6.60770 6.70246 7.11163 7.43777 7.50415 7.76238 7.95151 8.14294 8.82548 9.42256 10.93511 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.031512 B = 0.002560 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.333049 B =10936.321973 C =11804.205778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.357 6.357 12 C 0.522 3.478 13 O -0.495 6.495 14 C 0.052 3.948 15 C -0.106 4.106 16 C -0.118 4.118 17 C -0.044 4.044 18 C -0.143 4.143 19 C -0.005 4.005 20 Cl -0.068 7.068 21 C -0.119 4.119 22 C 0.123 3.877 23 N -0.560 5.560 24 H 0.431 0.569 25 H 0.264 0.736 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.162 0.838 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.189 -23.818 0.026 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.274 6.274 12 C 0.365 3.635 13 O -0.383 6.383 14 C -0.057 4.057 15 C -0.132 4.132 16 C -0.123 4.123 17 C -0.062 4.062 18 C -0.163 4.163 19 C -0.033 4.033 20 Cl -0.039 7.039 21 C -0.140 4.140 22 C 0.011 3.989 23 N -0.163 5.163 24 H 0.271 0.729 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.180 0.820 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.174 -23.508 0.032 23.608 hybrid contribution -0.020 1.338 -0.011 1.338 sum -2.194 -22.170 0.021 22.278 Atomic orbital electron populations 1.69965 1.06134 1.27115 1.49619 1.24985 0.94934 0.99468 0.94738 0.86451 0.79770 0.82678 0.78304 1.20420 1.21010 1.19659 1.20958 0.93229 0.89977 1.52446 0.92140 1.19186 0.94181 0.88983 0.98880 1.23767 0.96493 0.77911 1.01395 1.86595 1.42207 1.15848 1.82731 1.19909 0.85565 0.84049 0.73973 1.90886 1.13978 1.87590 1.45831 1.19362 0.82555 0.92640 1.11137 1.20917 0.99744 0.88581 1.03915 1.18219 0.92135 0.93773 1.08167 1.20334 0.98362 0.91103 0.96441 1.20485 0.90135 1.00508 1.05170 1.20468 0.87723 0.90869 1.04262 1.98376 1.36006 1.72661 1.96857 1.19827 0.96653 0.91472 1.06054 1.18045 0.94939 0.83244 1.02721 1.42038 1.06656 1.05904 1.61720 0.72859 0.92634 0.95340 0.95336 0.91865 0.91862 0.82041 0.84573 0.84738 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.08 1.63 5.42 37.16 0.20 1.83 16 11 O -0.36 -6.74 10.23 -40.91 -0.42 -7.16 16 12 C 0.52 8.92 7.94 34.22 0.27 9.19 16 13 O -0.49 -9.43 16.63 -19.32 -0.32 -9.75 16 14 C 0.05 0.72 6.99 -82.30 -0.58 0.14 16 15 C -0.11 -1.28 10.53 -39.14 -0.41 -1.69 16 16 C -0.12 -1.30 6.16 -106.92 -0.66 -1.96 16 17 C -0.04 -0.38 10.06 -39.53 -0.40 -0.77 16 18 C -0.14 -1.18 9.74 -39.93 -0.39 -1.57 16 19 C -0.01 -0.05 6.32 -39.43 -0.25 -0.30 16 20 Cl -0.07 -0.58 28.93 -51.86 -1.50 -2.08 16 21 C -0.12 -1.16 9.84 -39.39 -0.39 -1.55 16 22 C 0.12 1.37 7.25 -83.98 -0.61 0.77 16 23 N -0.56 -6.69 6.19 -7.37 -0.05 -6.73 16 24 H 0.43 4.56 8.96 -40.82 -0.37 4.19 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -30.33 316.10 -8.86 -39.19 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.29 Total: -0.49 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -3.77 Total: -8.63 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.69 Total: -31.87 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.74 Total: -16.91 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.33 -8.86 -39.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047737330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.518 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds