Wall clock time and date at job start Tue Mar 31 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00077 * 2 1 4 4 H 1.48506 * 109.47059 * 270.00069 * 3 2 1 5 5 H 1.48503 * 109.47389 * 29.99799 * 3 2 1 6 6 H 1.48505 * 109.47163 * 149.99976 * 3 2 1 7 7 C 1.37881 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99512 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46828 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.46978 * 179.97438 * 10 9 7 12 12 C 1.34851 * 116.99712 * 179.97438 * 11 10 9 13 13 O 1.21569 * 120.00270 * 0.02562 * 12 11 10 14 14 C 1.46858 * 119.99843 * 179.97438 * 12 11 10 15 15 C 1.35963 * 125.44546 * 180.02562 * 14 12 11 16 16 C 1.41531 * 107.72833 * 179.97438 * 15 14 12 17 17 C 1.40151 * 133.34105 * 179.97438 * 16 15 14 18 18 C 1.36396 * 119.84972 * 179.70132 * 17 16 15 19 19 C 1.39078 * 120.60393 * 0.55887 * 18 17 16 20 20 Cl 1.73599 * 119.69312 * 179.73849 * 19 18 17 21 21 C 1.37805 * 120.61721 * 359.45657 * 19 18 17 22 22 C 1.39191 * 119.80137 * 0.25481 * 21 19 18 23 23 N 1.37485 * 133.14300 * 180.02562 * 22 21 19 24 24 H 0.96993 * 125.61239 * 0.02562 * 23 22 21 25 25 H 0.97004 * 119.99896 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46920 * 60.00314 * 9 7 2 27 27 H 1.09001 * 109.47193 * 299.99808 * 9 7 2 28 28 H 1.09002 * 109.47201 * 59.99885 * 10 9 7 29 29 H 1.09001 * 109.46963 * 299.99809 * 10 9 7 30 30 H 1.07995 * 126.13583 * 0.02562 * 15 14 12 31 31 H 1.08000 * 120.07208 * 359.97438 * 17 16 15 32 32 H 1.07996 * 119.69806 * 180.27048 * 18 17 16 33 33 H 1.07997 * 120.09556 * 180.28360 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 8 1.5191 -4.9196 0.0024 12 6 2.2536 -6.0505 0.0031 13 8 3.4676 -5.9869 0.0035 14 6 1.5869 -7.3590 0.0043 15 6 2.2158 -8.5644 0.0055 16 6 1.2200 -9.5701 0.0070 17 6 1.2675 -10.9708 0.0081 18 6 0.1082 -11.6894 0.0157 19 6 -1.1243 -11.0450 0.0105 20 17 -2.5851 -11.9830 0.0134 21 6 -1.1968 -9.6689 0.0090 22 6 -0.0270 -8.9145 0.0072 23 7 0.2195 -7.5620 0.0060 24 1 -0.4550 -6.8650 0.0064 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8711 -3.6040 0.8923 29 1 2.8725 -3.6047 -0.8877 30 1 3.2837 -8.7256 0.0061 31 1 2.2199 -11.4800 0.0075 32 1 0.1477 -12.7686 0.0210 33 1 -2.1583 -9.1772 0.0096 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047737330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:18 Heat of formation + Delta-G solvation = -64.746989 kcal Electronic energy + Delta-G solvation = -19365.196182 eV Core-core repulsion = 15995.130983 eV Total energy + Delta-G solvation = -3370.065198 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.76697 -41.19858 -38.50413 -37.79183 -36.96847 -35.48693 -33.30528 -32.47050 -30.78299 -30.12382 -27.35652 -25.50803 -23.43339 -23.06430 -22.47803 -21.45371 -19.69149 -18.89474 -18.33771 -17.70066 -17.65398 -16.96285 -16.56999 -15.92560 -15.89432 -15.42631 -15.00062 -14.85957 -14.59138 -14.38461 -14.29814 -13.82088 -13.21054 -13.13098 -13.07037 -12.66312 -12.63163 -12.40245 -12.11274 -12.01665 -11.87052 -11.65088 -11.56819 -11.45243 -10.98335 -10.63972 -9.40921 -8.95284 -8.30044 -6.43089 -0.59515 0.43654 0.68343 1.01605 1.37744 1.41764 1.45491 1.54425 1.89652 1.93119 2.38080 2.67201 3.05021 3.53595 3.56980 3.94320 4.07652 4.10300 4.18060 4.18137 4.25541 4.44058 4.63867 4.72478 4.79514 5.10868 5.16462 5.26538 5.38415 5.40857 5.41954 5.46054 5.69189 5.82112 6.02795 6.23231 6.51274 6.70585 7.27010 8.82553 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.031512 B = 0.002560 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.333049 B =10936.321973 C =11804.205778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.031 3.969 10 C 0.092 3.908 11 O -0.363 6.363 12 C 0.525 3.475 13 O -0.519 6.519 14 C 0.019 3.981 15 C -0.085 4.085 16 C -0.136 4.136 17 C -0.035 4.035 18 C -0.142 4.142 19 C -0.002 4.002 20 Cl -0.060 7.060 21 C -0.132 4.132 22 C 0.118 3.882 23 N -0.562 5.562 24 H 0.433 0.567 25 H 0.268 0.732 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.176 0.824 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 -25.530 0.022 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.588 4.588 8 H 0.085 0.915 9 C -0.006 4.006 10 C 0.019 3.981 11 O -0.280 6.280 12 C 0.371 3.629 13 O -0.409 6.409 14 C -0.089 4.089 15 C -0.111 4.111 16 C -0.141 4.141 17 C -0.053 4.053 18 C -0.162 4.162 19 C -0.030 4.030 20 Cl -0.031 7.031 21 C -0.153 4.153 22 C 0.006 3.994 23 N -0.166 5.166 24 H 0.273 0.727 25 H 0.077 0.923 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.193 0.807 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.531 -25.243 0.027 25.289 hybrid contribution -0.325 1.632 -0.010 1.664 sum -1.856 -23.611 0.017 23.684 Atomic orbital electron populations 1.70085 1.07824 1.28314 1.50394 1.25955 0.95831 1.03420 0.94053 0.85328 0.78576 0.77761 0.78689 1.19542 1.20466 1.18653 1.21373 0.93797 0.91123 1.52498 0.91514 1.18986 0.94345 0.90516 0.96753 1.23282 0.95135 0.78125 1.01573 1.86569 1.42260 1.15807 1.83337 1.20326 0.85423 0.84261 0.72900 1.90859 1.14871 1.87854 1.47324 1.19025 0.83581 0.91277 1.15044 1.21182 1.00620 0.88103 1.01243 1.18440 0.91506 0.94839 1.09285 1.20680 0.99925 0.89969 0.94740 1.20821 0.89435 1.01862 1.04050 1.20699 0.88539 0.90815 1.02954 1.98385 1.35720 1.72308 1.96714 1.19975 0.96723 0.91874 1.06743 1.18299 0.95776 0.82849 1.02436 1.41991 1.06015 1.06499 1.62104 0.72657 0.92323 0.97445 0.97445 0.91651 0.91622 0.80707 0.81573 0.82173 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.55 -30.66 9.11 25.60 0.23 -30.42 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 9 C 0.03 1.64 5.35 29.85 0.16 1.79 16 10 C 0.09 4.00 5.42 71.98 0.39 4.39 16 11 O -0.36 -14.15 10.23 -57.64 -0.59 -14.74 16 12 C 0.53 18.31 7.94 70.08 0.56 18.87 16 13 O -0.52 -20.02 16.63 19.61 0.33 -19.69 16 14 C 0.02 0.51 6.99 39.86 0.28 0.79 16 15 C -0.09 -1.96 10.53 22.55 0.24 -1.72 16 16 C -0.14 -2.74 6.16 -21.36 -0.13 -2.87 16 17 C -0.03 -0.49 10.06 22.30 0.22 -0.26 16 18 C -0.14 -1.88 9.74 22.04 0.21 -1.66 16 19 C 0.00 -0.03 6.32 22.37 0.14 0.11 16 20 Cl -0.06 -0.90 28.93 -2.72 -0.08 -0.97 16 21 C -0.13 -2.39 9.84 22.40 0.22 -2.17 16 22 C 0.12 2.54 7.25 39.13 0.28 2.82 16 23 N -0.56 -13.49 6.19 -177.23 -1.10 -14.59 16 24 H 0.43 9.51 8.96 -92.71 -0.83 8.68 16 25 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 32 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -65.31 316.10 4.47 -60.84 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.33 Total: 8.13 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 3.27 Total: -9.50 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -0.81 Total: -69.15 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.26 Total: -34.43 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.97 kcal Total: -65.31 4.47 -60.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047737330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.910 kcal (2) G-P(sol) polarization free energy of solvation -65.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds