Wall clock time and date at job start Tue Mar 31 2020 07:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39739 * 125.77989 * 2 1 4 4 C 1.36143 * 107.85969 * 180.14843 * 3 2 1 5 5 N 1.39387 * 126.26342 * 179.87280 * 4 3 2 6 6 C 1.34777 * 119.99684 * 359.97344 * 5 4 3 7 7 O 1.21583 * 120.00270 * 359.71663 * 6 5 4 8 8 C 1.47716 * 119.99706 * 179.71962 * 6 5 4 9 9 C 1.39365 * 124.11954 * 179.97438 * 8 6 5 10 10 N 1.30087 * 112.14414 * 180.02562 * 9 8 6 11 11 S 1.55916 * 108.75972 * 359.97438 * 10 9 8 12 12 N 1.31500 * 124.12018 * 359.70157 * 8 6 5 13 13 N 1.35814 * 107.47242 * 359.61961 * 4 3 2 14 14 C 1.46494 * 126.09024 * 180.24211 * 13 4 3 15 15 C 1.50703 * 109.47364 * 89.99711 * 14 13 4 16 16 H 1.08005 * 119.99815 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00434 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99490 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00246 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47268 * 89.99920 * 19 17 15 21 21 H 1.48502 * 109.47156 * 210.00318 * 19 17 15 22 22 H 1.48502 * 109.47270 * 330.00130 * 19 17 15 23 23 N 1.30827 * 125.77711 * 179.71504 * 2 1 3 24 24 H 1.08999 * 109.47546 * 270.26092 * 1 2 3 25 25 H 1.09010 * 109.46998 * 30.25404 * 1 2 3 26 26 H 1.09000 * 109.47222 * 150.25297 * 1 2 3 27 27 H 1.07995 * 126.06669 * 0.02562 * 3 2 1 28 28 H 0.97001 * 119.99768 * 179.68638 * 5 4 3 29 29 H 1.08001 * 123.92819 * 359.97438 * 9 8 6 30 30 H 1.08998 * 109.46759 * 209.99298 * 14 13 4 31 31 H 1.09000 * 109.47519 * 329.99484 * 14 13 4 32 32 H 0.97000 * 119.99726 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1337 0.0000 4 6 3.6194 0.7148 -0.0034 5 7 4.7497 1.5304 -0.0070 6 6 4.6130 2.8713 -0.0080 7 8 3.5039 3.3693 -0.0109 8 6 5.8108 3.7357 -0.0055 9 6 5.7695 5.1287 -0.0068 10 7 6.9594 5.6545 -0.0047 11 16 8.0148 4.5069 -0.0008 12 7 7.0460 3.2846 0.0032 13 7 3.6088 -0.6433 0.0032 14 6 4.7858 -1.5155 0.0075 15 6 5.1894 -1.8076 1.4298 16 1 4.6257 -1.3855 2.2487 17 6 6.2783 -2.6138 1.6858 18 7 6.9649 -3.1274 0.6887 19 14 6.7789 -2.9754 3.4487 20 1 6.0775 -4.1956 3.9221 21 1 8.2467 -3.1920 3.5119 22 1 6.4105 -1.8258 4.3136 23 7 2.2718 -1.0614 0.0053 24 1 -0.3634 0.0047 1.0276 25 1 -0.3633 0.8878 -0.5178 26 1 -0.3634 -0.8922 -0.5099 27 1 1.9875 2.1599 0.0004 28 1 5.6345 1.1330 -0.0046 29 1 4.8559 5.7047 -0.0101 30 1 4.5479 -2.4493 -0.5017 31 1 5.6077 -1.0193 -0.5087 32 1 7.7307 -3.6949 0.8687 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049423917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:10 Heat of formation + Delta-G solvation = 104.399374 kcal Electronic energy + Delta-G solvation = -20438.974567 eV Core-core repulsion = 17142.873314 eV Total energy + Delta-G solvation = -3296.101253 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42787 -40.58940 -38.81114 -34.94853 -33.92105 -33.58628 -32.06373 -29.30963 -28.64850 -27.29040 -26.04664 -23.84269 -22.77557 -21.12941 -19.98885 -19.60110 -19.21139 -17.42460 -16.82690 -16.38292 -16.26714 -15.69994 -15.04541 -14.94535 -14.49376 -14.06655 -13.96393 -12.93258 -12.78635 -12.53550 -12.46667 -12.09093 -11.84249 -11.64497 -11.53355 -11.42103 -11.24193 -11.09005 -10.89699 -10.48899 -10.35853 -10.15860 -9.82468 -9.65929 -9.44251 -8.71707 -7.95194 -7.51904 -6.33137 -4.41461 0.19931 1.15932 1.28679 1.39318 2.48002 2.67431 3.17054 3.17331 3.23645 3.28048 3.57542 3.69607 4.23297 4.26908 4.59052 4.89168 5.00394 5.24330 5.32222 5.57961 6.02141 6.06830 6.10236 6.15096 6.26808 6.34066 6.60616 6.82677 7.01796 7.43901 7.51648 7.59445 7.76519 7.80166 8.13923 8.58225 8.68548 9.25981 10.74225 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.010730 B = 0.006004 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.972412 B = 4662.665915 C = 6833.925781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.289 4.289 4 C 0.296 3.704 5 N -0.617 5.617 6 C 0.611 3.389 7 O -0.499 6.499 8 C 0.016 3.984 9 C 0.094 3.906 10 N -0.581 5.581 11 S 0.728 5.272 12 N -0.540 5.540 13 N -0.343 5.343 14 C 0.256 3.744 15 C -0.541 4.541 16 H 0.065 0.935 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.906 3.094 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.279 5.279 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.163 0.837 28 H 0.425 0.575 29 H 0.217 0.783 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 14.867 -2.567 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.320 4.320 4 C 0.074 3.926 5 N -0.263 5.263 6 C 0.391 3.609 7 O -0.372 6.372 8 C -0.159 4.159 9 C -0.100 4.100 10 N -0.422 5.422 11 S 0.769 5.231 12 N -0.390 5.390 13 N -0.128 5.128 14 C 0.138 3.862 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.197 1.197 23 N -0.105 5.105 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.180 0.820 28 H 0.264 0.736 29 H 0.233 0.767 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.854 13.872 -2.613 14.237 hybrid contribution -0.699 0.183 0.985 1.221 sum 1.155 14.055 -1.628 14.196 Atomic orbital electron populations 1.20029 0.87461 1.02403 1.02219 1.22023 0.96583 0.90923 1.01949 1.21269 0.88920 1.00544 1.21305 1.17962 0.87588 0.83440 1.03578 1.42412 1.09169 1.04851 1.69908 1.16481 0.86162 0.80751 0.77458 1.90769 1.24071 1.73813 1.48504 1.22286 0.90891 0.93917 1.08802 1.23735 0.96574 0.91242 0.98458 1.72264 1.07288 1.38744 1.23896 1.79112 1.17843 0.79218 1.46899 1.72494 1.07703 1.38735 1.20096 1.49537 1.06543 1.01946 1.54820 1.19656 0.77779 0.89725 0.99002 1.21328 1.13431 1.31891 0.91270 0.91701 1.24927 0.95630 0.94882 0.98198 1.69914 1.19207 1.32421 1.31134 0.86353 0.77655 0.79046 0.83643 1.20170 1.20824 1.19722 1.77352 0.86093 1.21826 1.25213 0.91257 0.91067 0.91511 0.81953 0.73633 0.76687 0.92421 0.93731 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.52 16 2 C 0.05 0.99 7.20 -82.46 -0.59 0.39 16 3 C -0.29 -5.76 9.58 -39.77 -0.38 -6.14 16 4 C 0.30 6.27 7.68 -152.73 -1.17 5.09 16 5 N -0.62 -11.32 5.41 -12.23 -0.07 -11.39 16 6 C 0.61 9.86 7.79 -12.39 -0.10 9.77 16 7 O -0.50 -8.53 13.93 5.29 0.07 -8.45 16 8 C 0.02 0.21 6.81 -83.72 -0.57 -0.36 16 9 C 0.09 1.03 11.22 -17.87 -0.20 0.83 16 10 N -0.58 -6.24 11.41 19.43 0.22 -6.01 16 11 S 0.73 6.90 23.69 -107.50 -2.55 4.35 16 12 N -0.54 -7.03 11.00 23.18 0.26 -6.78 16 13 N -0.34 -8.06 3.62 -61.45 -0.22 -8.28 16 14 C 0.26 6.47 6.02 -5.20 -0.03 6.44 16 15 C -0.54 -14.69 9.39 -34.44 -0.32 -15.01 16 16 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 17 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 19 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 23 N -0.28 -6.45 12.56 33.64 0.42 -6.02 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.16 3.06 5.83 -52.49 -0.31 2.75 16 28 H 0.43 7.75 7.58 -40.82 -0.31 7.45 16 29 H 0.22 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.06 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.04 1.11 7.52 -51.93 -0.39 0.71 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 305.03 15.07 4.60 4.60 Total: -1.00 -31.22 305.03 -7.31 -38.53 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -2.66 Total: 5.17 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -3.09 Total: 2.20 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: 1.35 Total: -62.28 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 6.90 SS G_CDS: -2.55 Total: 4.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.22 -7.31 -38.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049423917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.925 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds