Wall clock time and date at job start Tue Mar 31 2020 07:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39739 * 125.77989 * 2 1 4 4 C 1.36143 * 107.85969 * 180.14843 * 3 2 1 5 5 N 1.39387 * 126.26342 * 179.87280 * 4 3 2 6 6 C 1.34777 * 119.99684 * 359.97344 * 5 4 3 7 7 O 1.21583 * 120.00270 * 359.71663 * 6 5 4 8 8 C 1.47716 * 119.99706 * 179.71962 * 6 5 4 9 9 C 1.39365 * 124.11954 * 179.97438 * 8 6 5 10 10 N 1.30087 * 112.14414 * 180.02562 * 9 8 6 11 11 S 1.55916 * 108.75972 * 359.97438 * 10 9 8 12 12 N 1.31500 * 124.12018 * 359.70157 * 8 6 5 13 13 N 1.35814 * 107.47242 * 359.61961 * 4 3 2 14 14 C 1.46494 * 126.09024 * 180.24211 * 13 4 3 15 15 C 1.50703 * 109.47364 * 89.99711 * 14 13 4 16 16 H 1.08005 * 119.99815 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00434 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99490 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00246 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47268 * 89.99920 * 19 17 15 21 21 H 1.48502 * 109.47156 * 210.00318 * 19 17 15 22 22 H 1.48502 * 109.47270 * 330.00130 * 19 17 15 23 23 N 1.30827 * 125.77711 * 179.71504 * 2 1 3 24 24 H 1.08999 * 109.47546 * 270.26092 * 1 2 3 25 25 H 1.09010 * 109.46998 * 30.25404 * 1 2 3 26 26 H 1.09000 * 109.47222 * 150.25297 * 1 2 3 27 27 H 1.07995 * 126.06669 * 0.02562 * 3 2 1 28 28 H 0.97001 * 119.99768 * 179.68638 * 5 4 3 29 29 H 1.08001 * 123.92819 * 359.97438 * 9 8 6 30 30 H 1.08998 * 109.46759 * 209.99298 * 14 13 4 31 31 H 1.09000 * 109.47519 * 329.99484 * 14 13 4 32 32 H 0.97000 * 119.99726 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1337 0.0000 4 6 3.6194 0.7148 -0.0034 5 7 4.7497 1.5304 -0.0070 6 6 4.6130 2.8713 -0.0080 7 8 3.5039 3.3693 -0.0109 8 6 5.8108 3.7357 -0.0055 9 6 5.7695 5.1287 -0.0068 10 7 6.9594 5.6545 -0.0047 11 16 8.0148 4.5069 -0.0008 12 7 7.0460 3.2846 0.0032 13 7 3.6088 -0.6433 0.0032 14 6 4.7858 -1.5155 0.0075 15 6 5.1894 -1.8076 1.4298 16 1 4.6257 -1.3855 2.2487 17 6 6.2783 -2.6138 1.6858 18 7 6.9649 -3.1274 0.6887 19 14 6.7789 -2.9754 3.4487 20 1 6.0775 -4.1956 3.9221 21 1 8.2467 -3.1920 3.5119 22 1 6.4105 -1.8258 4.3136 23 7 2.2718 -1.0614 0.0053 24 1 -0.3634 0.0047 1.0276 25 1 -0.3633 0.8878 -0.5178 26 1 -0.3634 -0.8922 -0.5099 27 1 1.9875 2.1599 0.0004 28 1 5.6345 1.1330 -0.0046 29 1 4.8559 5.7047 -0.0101 30 1 4.5479 -2.4493 -0.5017 31 1 5.6077 -1.0193 -0.5087 32 1 7.7307 -3.6949 0.8687 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049423917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:10 Heat of formation + Delta-G solvation = 82.627828 kcal Electronic energy + Delta-G solvation = -20439.918652 eV Core-core repulsion = 17142.873314 eV Total energy + Delta-G solvation = -3297.045338 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.64768 -41.92494 -40.11869 -36.39686 -35.70502 -34.66519 -33.81568 -30.87684 -30.14786 -28.43159 -27.80978 -25.12162 -24.50544 -22.39153 -21.38061 -20.89257 -20.30149 -18.94708 -18.70269 -17.93483 -17.33730 -16.93779 -16.52755 -16.32836 -16.02623 -15.49609 -15.43388 -14.60065 -14.43895 -14.04997 -13.59853 -13.41863 -13.34133 -13.11644 -12.92299 -12.73850 -12.52637 -12.35011 -12.31430 -12.13484 -12.01148 -11.72057 -11.54405 -11.15738 -10.78362 -10.30221 -9.65623 -9.12069 -8.38341 -6.55846 -0.76269 0.26475 0.26957 0.56509 1.01614 1.26983 1.34299 1.36075 1.46801 1.78472 2.09754 2.10692 2.32335 2.92058 3.21412 3.46783 3.81766 3.97214 4.20088 4.46438 4.57316 4.69288 4.77073 4.82784 4.93682 4.95462 5.18615 5.21830 5.32452 5.48743 5.74419 5.95199 6.02775 6.17302 6.52113 6.71875 6.98754 7.15936 8.68462 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.010730 B = 0.006004 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.972412 B = 4662.665915 C = 6833.925781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.060 3.940 3 C -0.294 4.294 4 C 0.292 3.708 5 N -0.624 5.624 6 C 0.615 3.385 7 O -0.509 6.509 8 C -0.004 4.004 9 C 0.103 3.897 10 N -0.593 5.593 11 S 0.812 5.188 12 N -0.576 5.576 13 N -0.368 5.368 14 C 0.273 3.727 15 C -0.557 4.557 16 H 0.048 0.952 17 C 0.027 3.973 18 N -0.914 5.914 19 Si 0.969 3.031 20 H -0.273 1.273 21 H -0.268 1.268 22 H -0.272 1.272 23 N -0.325 5.325 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.177 0.823 28 H 0.423 0.577 29 H 0.236 0.764 30 H 0.029 0.971 31 H 0.042 0.958 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 16.578 -1.840 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.326 4.326 4 C 0.070 3.930 5 N -0.271 5.271 6 C 0.397 3.603 7 O -0.383 6.383 8 C -0.177 4.177 9 C -0.089 4.089 10 N -0.435 5.435 11 S 0.854 5.146 12 N -0.429 5.429 13 N -0.154 5.154 14 C 0.154 3.846 15 C -0.595 4.595 16 H 0.066 0.934 17 C -0.175 4.175 18 N -0.552 5.552 19 Si 0.793 3.207 20 H -0.199 1.199 21 H -0.193 1.193 22 H -0.197 1.197 23 N -0.150 5.150 24 H 0.104 0.896 25 H 0.118 0.882 26 H 0.093 0.907 27 H 0.194 0.806 28 H 0.261 0.739 29 H 0.252 0.748 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.121 15.619 -1.898 15.876 hybrid contribution -0.709 -0.226 0.714 1.031 sum 1.412 15.392 -1.184 15.502 Atomic orbital electron populations 1.20250 0.83605 1.04223 1.03834 1.22919 0.98850 0.89884 0.98927 1.21531 0.88488 1.01194 1.21383 1.18379 0.89072 0.82886 1.02680 1.42574 1.08277 1.05514 1.70709 1.16851 0.87177 0.80031 0.76212 1.90731 1.24969 1.73796 1.48801 1.21894 0.89961 0.94225 1.11588 1.23865 0.97381 0.90223 0.97410 1.72233 1.07537 1.39342 1.24401 1.78812 1.15580 0.77002 1.43255 1.72265 1.08346 1.41425 1.20843 1.49317 1.06357 1.02648 1.57090 1.19195 0.78597 0.88950 0.97818 1.21410 1.13874 1.32593 0.91594 0.93402 1.25700 0.95314 0.94322 1.02177 1.69991 1.19538 1.32621 1.33008 0.85388 0.77941 0.78660 0.78704 1.19869 1.19289 1.19706 1.77305 0.86208 1.23741 1.27734 0.89576 0.88237 0.90699 0.80598 0.73907 0.74754 0.95245 0.93979 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 10.44 71.24 0.74 -0.87 16 2 C 0.06 2.33 7.20 43.07 0.31 2.64 16 3 C -0.29 -11.68 9.58 22.14 0.21 -11.47 16 4 C 0.29 12.61 7.68 131.18 1.01 13.61 16 5 N -0.62 -23.41 5.41 -310.88 -1.68 -25.09 16 6 C 0.61 19.75 7.79 86.75 0.68 20.43 16 7 O -0.51 -17.07 13.93 -3.98 -0.06 -17.13 16 8 C 0.00 -0.11 6.81 41.97 0.29 0.18 16 9 C 0.10 2.05 11.22 85.22 0.96 3.01 16 10 N -0.59 -11.26 11.41 -92.45 -1.05 -12.31 16 11 S 0.81 13.53 23.69 -56.49 -1.34 12.19 16 12 N -0.58 -14.38 11.00 -80.58 -0.89 -15.26 16 13 N -0.37 -17.98 3.62 -348.33 -1.26 -19.24 16 14 C 0.27 14.48 6.02 85.64 0.52 14.99 16 15 C -0.56 -31.16 9.39 25.60 0.24 -30.92 16 16 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 17 C 0.03 1.44 5.46 84.66 0.46 1.90 16 18 N -0.91 -51.01 13.29 21.45 0.28 -50.72 16 19 Si 0.97 42.86 29.54 68.60 2.03 44.89 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 N -0.32 -15.35 12.56 -47.47 -0.60 -15.95 16 24 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.10 2.09 8.14 -2.38 -0.02 2.08 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.18 6.44 5.83 -2.91 -0.02 6.42 16 28 H 0.42 16.01 7.58 -92.71 -0.70 15.30 16 29 H 0.24 3.52 8.06 -2.91 -0.02 3.50 16 30 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.04 2.20 7.52 -2.39 -0.02 2.18 16 32 H 0.27 14.29 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -68.06 305.03 1.33 -66.72 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.49 Total: 18.41 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 5.41 Total: 13.50 kcal Atomic # 7 Polarization: -133.38 SS G_CDS: -5.20 Total: -138.58 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.06 Total: -17.13 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 13.53 SS G_CDS: -1.34 Total: 12.19 kcal Total: -68.06 1.33 -66.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049423917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.349 kcal (2) G-P(sol) polarization free energy of solvation -68.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds