Wall clock time and date at job start Tue Mar 31 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47325 * 113.44394 * 3 2 1 5 5 N 1.46500 * 109.47513 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99851 * 262.94511 * 5 4 3 7 7 C 1.50698 * 109.46603 * 269.99629 * 6 5 4 8 8 H 1.08000 * 120.00644 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99949 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00397 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99687 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.46988 * 90.00147 * 11 9 7 13 13 H 1.48498 * 109.46862 * 209.99796 * 11 9 7 14 14 H 1.48492 * 109.47295 * 329.99668 * 11 9 7 15 15 C 1.34775 * 120.00340 * 82.93740 * 5 4 3 16 16 O 1.21511 * 120.00464 * 183.24299 * 15 5 4 17 17 C 1.48166 * 119.99786 * 3.24465 * 15 5 4 18 18 C 1.39269 * 119.71615 * 173.23972 * 17 15 5 19 19 C 1.38628 * 119.09094 * 180.25052 * 18 17 15 20 20 C 1.38562 * 118.50295 * 359.48136 * 19 18 17 21 21 C 1.38718 * 119.34344 * 0.27479 * 20 19 18 22 22 Cl 1.73605 * 119.56745 * 179.97438 * 21 20 19 23 23 N 1.31617 * 120.87102 * 359.97438 * 21 20 19 24 24 H 1.09001 * 109.46904 * 353.44403 * 3 2 1 25 25 H 1.08996 * 109.46994 * 233.44408 * 3 2 1 26 26 H 1.09000 * 109.47021 * 59.99597 * 4 3 2 27 27 H 1.09003 * 109.46848 * 300.00228 * 4 3 2 28 28 H 1.08997 * 109.47144 * 29.99205 * 6 5 4 29 29 H 1.08997 * 109.47300 * 149.99973 * 6 5 4 30 30 H 0.96993 * 120.00167 * 180.02562 * 10 9 7 31 31 H 1.08006 * 120.45495 * 0.02562 * 18 17 15 32 32 H 1.08003 * 120.74587 * 179.75536 * 19 18 17 33 33 H 1.08000 * 120.32436 * 180.25292 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5748 -1.3234 5 7 4.5828 0.5749 -1.3236 6 6 5.3152 1.7921 -0.9656 7 6 5.5661 2.6104 -2.2060 8 1 5.2155 2.2588 -3.1650 9 6 6.2433 3.8081 -2.1164 10 7 6.4628 4.5221 -3.1989 11 14 6.8505 4.4159 -0.4576 12 1 8.2241 3.9061 -0.2162 13 1 6.8652 5.9008 -0.4498 14 1 5.9449 3.9242 0.6115 15 6 5.2567 -0.5448 -1.6531 16 8 6.4704 -0.5623 -1.5965 17 6 4.5177 -1.7544 -2.0844 18 6 5.2197 -2.8601 -2.5578 19 6 4.5150 -3.9831 -2.9629 20 6 3.1326 -3.9652 -2.8701 21 6 2.4985 -2.8313 -2.3840 22 17 0.7667 -2.8023 -2.2660 23 7 3.1924 -1.7769 -2.0111 24 1 2.9717 -1.0201 0.1173 25 1 2.9710 0.6129 0.8255 26 1 2.7539 1.5955 -1.4407 27 1 2.7547 -0.0375 -2.1489 28 1 4.7262 2.3758 -0.2583 29 1 6.2677 1.5221 -0.5097 30 1 6.9395 5.3644 -3.1359 31 1 6.2983 -2.8417 -2.6121 32 1 5.0321 -4.8539 -3.3380 33 1 2.5545 -4.8256 -3.1736 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051073236.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:17 Heat of formation + Delta-G solvation = 26.148873 kcal Electronic energy + Delta-G solvation = -20813.954028 eV Core-core repulsion = 17480.123122 eV Total energy + Delta-G solvation = -3333.830907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.91699 -40.03532 -38.01805 -37.65193 -36.81065 -34.89611 -33.74247 -32.41117 -32.18265 -29.80997 -26.22652 -25.23385 -24.56954 -23.81385 -20.90848 -19.19203 -18.62593 -18.36927 -18.21772 -17.09231 -16.95404 -16.36554 -16.28630 -15.96551 -15.81098 -15.11652 -14.98413 -14.59475 -14.32012 -14.29001 -13.79227 -13.48041 -13.32809 -13.19591 -12.96769 -12.74426 -12.70527 -12.39047 -12.34457 -12.00931 -11.96735 -11.70822 -11.31304 -10.97682 -10.77684 -10.29090 -10.11995 -9.48232 -8.28741 -6.34592 -0.47786 0.00823 0.71608 1.40095 1.43410 1.51591 1.65819 1.77278 1.90219 2.14458 2.36621 2.68699 2.92059 3.07263 3.33005 3.71891 3.80809 3.94559 4.09692 4.20893 4.22238 4.37200 4.61654 4.79283 4.83060 4.89907 4.96975 5.05595 5.19735 5.41779 5.48632 5.59543 6.22839 6.35735 6.55225 6.67048 6.67796 7.15101 7.31966 8.88129 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.005346 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.863066 B = 5236.315674 C = 6244.736156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.243 3.757 3 C -0.023 4.023 4 C 0.114 3.886 5 N -0.574 5.574 6 C 0.220 3.780 7 C -0.537 4.537 8 H 0.028 0.972 9 C 0.012 3.988 10 N -0.947 5.947 11 Si 0.945 3.055 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.230 1.230 15 C 0.557 3.443 16 O -0.567 6.567 17 C 0.084 3.916 18 C -0.111 4.111 19 C -0.047 4.047 20 C -0.119 4.119 21 C 0.150 3.850 22 Cl -0.030 7.030 23 N -0.462 5.462 24 H 0.114 0.886 25 H 0.124 0.876 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.267 0.733 31 H 0.155 0.845 32 H 0.197 0.803 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.969 -20.115 4.451 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.074 4.074 3 C -0.064 4.064 4 C -0.011 4.011 5 N -0.302 5.302 6 C 0.098 3.902 7 C -0.576 4.576 8 H 0.046 0.954 9 C -0.186 4.186 10 N -0.587 5.587 11 Si 0.768 3.232 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.153 1.153 15 C 0.344 3.656 16 O -0.446 6.446 17 C -0.052 4.052 18 C -0.132 4.132 19 C -0.073 4.073 20 C -0.140 4.140 21 C -0.016 4.016 22 Cl -0.001 7.001 23 N -0.177 5.177 24 H 0.132 0.868 25 H 0.142 0.858 26 H 0.094 0.906 27 H 0.132 0.868 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.173 0.827 32 H 0.214 0.786 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.534 -19.173 4.771 21.522 hybrid contribution 1.086 0.375 -0.228 1.172 sum -7.448 -18.798 4.542 20.723 Atomic orbital electron populations 1.81170 1.13811 1.10560 1.09909 1.28976 0.94889 0.91641 0.91886 1.19585 0.80906 1.05463 1.00489 1.21888 0.78329 1.02368 0.98489 1.47762 1.07305 1.10623 1.64499 1.19562 0.93321 0.82158 0.95163 1.21542 1.36809 1.05016 0.94216 0.95411 1.25846 0.95292 0.96488 1.00972 1.70055 1.42728 1.14991 1.30952 0.85748 0.79917 0.77559 0.79994 1.19810 1.20766 1.15275 1.18295 0.86417 0.83112 0.77797 1.90742 1.14454 1.84135 1.55260 1.20876 0.88442 0.94982 1.00948 1.22402 1.03154 0.92239 0.95389 1.22089 0.92817 0.98392 0.93956 1.22457 0.95851 0.98167 0.97477 1.22094 0.87865 0.92002 0.99672 1.98445 1.06808 1.98353 1.96523 1.67317 1.07347 1.26555 1.16459 0.86814 0.85774 0.90606 0.86845 0.92142 0.94773 0.92365 0.82738 0.78628 0.79886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.55 18.54 20.01 0.37 -14.18 16 2 C 0.24 6.43 15.43 89.44 1.38 7.81 16 3 C -0.02 -0.56 5.37 28.79 0.15 -0.40 16 4 C 0.11 3.52 4.94 86.38 0.43 3.95 16 5 N -0.57 -22.02 2.47 -829.22 -2.05 -24.07 16 6 C 0.22 9.89 4.22 85.63 0.36 10.25 16 7 C -0.54 -30.36 9.94 25.60 0.25 -30.11 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 9 C 0.01 0.68 5.47 84.66 0.46 1.15 16 10 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 11 Si 0.95 42.39 27.47 68.60 1.88 44.28 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.23 -8.97 6.54 99.48 0.65 -8.32 16 15 C 0.56 21.17 7.60 86.88 0.66 21.83 16 16 O -0.57 -25.53 15.90 -3.75 -0.06 -25.59 16 17 C 0.08 2.40 6.52 41.89 0.27 2.67 16 18 C -0.11 -2.37 9.63 22.61 0.22 -2.15 16 19 C -0.05 -0.58 10.17 22.44 0.23 -0.35 16 20 C -0.12 -1.56 9.88 22.46 0.22 -1.34 16 21 C 0.15 3.04 7.27 84.84 0.62 3.66 16 22 Cl -0.03 -0.61 29.11 -2.72 -0.08 -0.69 16 23 N -0.46 -11.73 4.32 -175.86 -0.76 -12.49 16 24 H 0.11 2.54 6.76 -2.39 -0.02 2.53 16 25 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.08 2.47 8.02 -2.39 -0.02 2.45 16 27 H 0.11 3.56 5.23 -3.14 -0.02 3.54 16 28 H 0.06 2.43 7.13 -2.39 -0.02 2.42 16 29 H 0.03 1.61 6.81 -2.39 -0.02 1.59 16 30 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.15 3.34 7.66 -2.91 -0.02 3.32 16 32 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 33 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -75.27 311.19 5.96 -69.31 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.10 Total: 5.04 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 5.26 Total: 16.96 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -2.14 Total: -109.31 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.06 Total: -25.59 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.28 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -75.27 5.96 -69.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051073236.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.461 kcal (2) G-P(sol) polarization free energy of solvation -75.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds