Wall clock time and date at job start Tue Mar 31 2020 07:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46492 * 109.46911 * 323.05956 * 3 2 1 5 5 C 1.37101 * 119.99785 * 263.94952 * 4 3 2 6 6 H 1.08001 * 120.00120 * 200.22443 * 5 4 3 7 7 C 1.38952 * 119.99860 * 20.22305 * 5 4 3 8 8 N 1.31397 * 120.00176 * 21.42243 * 7 5 4 9 9 Si 1.86798 * 119.99543 * 201.42494 * 7 5 4 10 10 H 1.48492 * 109.47516 * 60.00140 * 9 7 5 11 11 H 1.48508 * 109.46847 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47359 * 299.99564 * 9 7 5 13 13 C 1.34773 * 120.00216 * 83.95608 * 4 3 2 14 14 O 1.21293 * 120.00099 * 180.02562 * 13 4 3 15 15 C 1.50696 * 120.00159 * 359.97438 * 13 4 3 16 16 N 1.46498 * 109.47639 * 180.02562 * 15 13 4 17 17 C 1.39748 * 120.00640 * 180.02562 * 16 15 13 18 18 C 1.38885 * 120.07498 * 359.97438 * 17 16 15 19 19 C 1.38116 * 119.93787 * 179.97438 * 18 17 16 20 20 C 1.38286 * 120.09225 * 0.02562 * 19 18 17 21 21 C 1.38272 * 120.15960 * 0.02562 * 20 19 18 22 22 C 1.38211 * 120.06138 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 120.04678 * 180.02562 * 22 21 20 24 24 H 1.08996 * 109.46677 * 203.05685 * 3 2 1 25 25 H 1.09005 * 109.46721 * 83.06051 * 3 2 1 26 26 H 0.96998 * 120.00490 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.47257 * 59.99841 * 15 13 4 28 28 H 1.09002 * 109.47204 * 300.00061 * 15 13 4 29 29 H 0.97007 * 119.99581 * 359.97438 * 16 15 13 30 30 H 1.08005 * 120.02887 * 0.27763 * 18 17 16 31 31 H 1.08002 * 119.94966 * 179.97438 * 19 18 17 32 32 H 1.08009 * 119.91888 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.96697 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0968 -1.1030 0.8301 5 6 3.4432 -0.8765 2.1371 6 1 4.0928 -1.5691 2.6515 7 6 2.9584 0.2444 2.8000 8 7 1.8756 0.8481 2.3646 9 14 3.8462 0.8929 4.3102 10 1 5.2365 1.2654 3.9452 11 1 3.1329 2.0879 4.8285 12 1 3.8743 -0.1592 5.3578 13 6 3.2061 -2.3411 0.3089 14 8 3.6103 -3.2550 0.9963 15 6 2.8250 -2.5902 -1.1277 16 7 3.0319 -4.0043 -1.4497 17 6 2.7461 -4.4779 -2.7330 18 6 2.2652 -3.6095 -3.7043 19 6 1.9841 -4.0805 -4.9719 20 6 2.1803 -5.4154 -5.2749 21 6 2.6579 -6.2837 -4.3106 22 6 2.9413 -5.8193 -3.0400 23 17 3.5415 -6.9097 -1.8298 24 1 2.9709 0.9464 0.4025 25 1 2.9714 -0.1234 -1.0202 26 1 1.5369 1.6303 2.8275 27 1 3.4441 -1.9744 -1.7799 28 1 1.7757 -2.3343 -1.2749 29 1 3.3681 -4.6118 -0.7722 30 1 2.1159 -2.5658 -3.4700 31 1 1.6098 -3.4054 -5.7272 32 1 1.9592 -5.7808 -6.2669 33 1 2.8104 -7.3256 -4.5507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060332043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:10 Heat of formation + Delta-G solvation = 27.050451 kcal Electronic energy + Delta-G solvation = -20338.147487 eV Core-core repulsion = 17004.355676 eV Total energy + Delta-G solvation = -3333.791811 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.65883 -38.83447 -36.26521 -36.10090 -35.10952 -34.35031 -32.05847 -30.67065 -29.79191 -27.64895 -26.74184 -24.48477 -22.63968 -21.62049 -19.44446 -18.09539 -17.89000 -16.64135 -16.44091 -15.97711 -15.58872 -14.84361 -14.71462 -14.35114 -14.04629 -13.70468 -13.63079 -13.54459 -13.13624 -12.64647 -12.44429 -12.01750 -11.88458 -11.73270 -11.43727 -11.37999 -11.22959 -11.20282 -10.72153 -10.70746 -10.51778 -10.49204 -10.07840 -9.38788 -8.86085 -8.77750 -8.18918 -7.32736 -6.62999 -4.14790 1.27061 1.56279 2.32365 3.02747 3.14706 3.16746 3.33848 3.48289 3.71003 3.78372 3.86082 4.02920 4.60806 4.77232 4.81639 4.99131 5.03781 5.28611 5.34045 5.39456 5.48473 5.59943 5.68589 5.84542 5.94884 6.14487 6.28710 6.32685 6.53388 6.75962 7.26593 7.35621 7.73879 7.91791 8.12138 8.62536 8.83158 9.02920 9.52332 10.42969 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.004124 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.775380 B = 6788.407316 C = 7720.707940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.241 3.759 3 C 0.219 3.781 4 N -0.433 5.433 5 C -0.319 4.319 6 H 0.109 0.891 7 C 0.036 3.964 8 N -0.872 5.872 9 Si 0.930 3.070 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.446 3.554 14 O -0.567 6.567 15 C 0.105 3.895 16 N -0.720 5.720 17 C 0.238 3.762 18 C -0.195 4.195 19 C -0.064 4.064 20 C -0.181 4.181 21 C -0.061 4.061 22 C -0.120 4.120 23 Cl -0.074 7.074 24 H 0.128 0.872 25 H 0.086 0.914 26 H 0.276 0.724 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.415 0.585 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.302 -5.175 -13.647 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.078 4.078 3 C 0.091 3.909 4 N -0.153 5.153 5 C -0.446 4.446 6 H 0.127 0.873 7 C -0.169 4.169 8 N -0.510 5.510 9 Si 0.756 3.244 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.234 3.766 14 O -0.450 6.450 15 C -0.023 4.023 16 N -0.350 5.350 17 C 0.130 3.870 18 C -0.218 4.218 19 C -0.083 4.083 20 C -0.202 4.202 21 C -0.081 4.081 22 C -0.151 4.151 23 Cl -0.046 7.046 24 H 0.145 0.855 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.256 0.744 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.752 -5.327 -13.011 14.168 hybrid contribution 0.737 0.271 1.259 1.484 sum 2.489 -5.056 -11.752 13.033 Atomic orbital electron populations 1.80919 1.13495 1.08719 1.11297 1.29215 0.95296 0.92620 0.90653 1.18750 0.81796 0.95439 0.94895 1.43545 1.55956 1.04617 1.11203 1.19672 1.28290 1.09546 0.87048 0.87313 1.25324 0.94677 0.97515 0.99378 1.69823 1.17751 1.21370 1.42034 0.85930 0.79391 0.78338 0.80765 1.19548 1.20913 1.19710 1.19934 0.84893 0.83229 0.88577 1.90551 1.50540 1.42084 1.61840 1.21157 1.01554 0.83217 0.96346 1.44692 1.70738 1.09615 1.09979 1.17601 0.92658 0.90666 0.86043 1.20672 1.08175 0.99658 0.93294 1.20960 0.96216 0.95504 0.95596 1.20776 1.06337 0.93649 0.99409 1.20765 0.96746 0.99958 0.90586 1.20349 1.12984 0.89644 0.92151 1.98348 1.87020 1.63253 1.55965 0.85466 0.89584 0.91346 0.89986 0.90283 0.74414 0.85199 0.85745 0.85868 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.56 18.54 42.15 0.78 -9.77 16 2 C 0.24 5.00 12.82 -20.76 -0.27 4.73 16 3 C 0.22 3.98 4.91 -6.83 -0.03 3.95 16 4 N -0.43 -9.52 2.60 -117.94 -0.31 -9.83 16 5 C -0.32 -7.85 9.27 -14.93 -0.14 -7.99 16 6 H 0.11 2.84 7.43 -52.49 -0.39 2.45 16 7 C 0.04 0.85 4.84 -17.47 -0.08 0.77 16 8 N -0.87 -21.18 9.58 55.50 0.53 -20.64 16 9 Si 0.93 18.93 29.60 -169.99 -5.03 13.90 16 10 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 13 C 0.45 9.60 7.63 -10.99 -0.08 9.51 16 14 O -0.57 -14.21 15.34 5.55 0.09 -14.12 16 15 C 0.11 1.76 4.00 -5.20 -0.02 1.74 16 16 N -0.72 -12.10 5.66 -59.78 -0.34 -12.44 16 17 C 0.24 3.54 6.65 -83.73 -0.56 2.98 16 18 C -0.19 -2.48 9.31 -39.39 -0.37 -2.85 16 19 C -0.06 -0.69 10.04 -39.61 -0.40 -1.08 16 20 C -0.18 -1.88 10.04 -39.55 -0.40 -2.28 16 21 C -0.06 -0.71 9.82 -39.58 -0.39 -1.10 16 22 C -0.12 -1.68 6.34 -39.31 -0.25 -1.93 16 23 Cl -0.07 -1.06 27.60 -51.86 -1.43 -2.49 16 24 H 0.13 2.36 6.63 -51.93 -0.34 2.02 16 25 H 0.09 1.13 6.69 -51.93 -0.35 0.78 16 26 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.08 1.11 7.22 -51.93 -0.37 0.74 16 28 H 0.08 1.30 7.30 -51.93 -0.38 0.92 16 29 H 0.42 7.68 6.11 -40.82 -0.25 7.43 16 30 H 0.13 1.50 6.74 -52.48 -0.35 1.15 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -29.45 306.52 -6.92 -36.36 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -2.84 Total: 7.97 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -2.98 Total: 6.44 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.67 Total: -52.69 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.09 Total: -14.12 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.43 Total: -2.49 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.45 -6.92 -36.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.413 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds