Wall clock time and date at job start Tue Mar 31 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46492 * 109.46911 * 323.05956 * 3 2 1 5 5 C 1.37101 * 119.99785 * 263.94952 * 4 3 2 6 6 H 1.08001 * 120.00120 * 200.22443 * 5 4 3 7 7 C 1.38952 * 119.99860 * 20.22305 * 5 4 3 8 8 N 1.31397 * 120.00176 * 21.42243 * 7 5 4 9 9 Si 1.86798 * 119.99543 * 201.42494 * 7 5 4 10 10 H 1.48492 * 109.47516 * 60.00140 * 9 7 5 11 11 H 1.48508 * 109.46847 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47359 * 299.99564 * 9 7 5 13 13 C 1.34773 * 120.00216 * 83.95608 * 4 3 2 14 14 O 1.21293 * 120.00099 * 180.02562 * 13 4 3 15 15 C 1.50696 * 120.00159 * 359.97438 * 13 4 3 16 16 N 1.46498 * 109.47639 * 180.02562 * 15 13 4 17 17 C 1.39748 * 120.00640 * 180.02562 * 16 15 13 18 18 C 1.38885 * 120.07498 * 359.97438 * 17 16 15 19 19 C 1.38116 * 119.93787 * 179.97438 * 18 17 16 20 20 C 1.38286 * 120.09225 * 0.02562 * 19 18 17 21 21 C 1.38272 * 120.15960 * 0.02562 * 20 19 18 22 22 C 1.38211 * 120.06138 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 120.04678 * 180.02562 * 22 21 20 24 24 H 1.08996 * 109.46677 * 203.05685 * 3 2 1 25 25 H 1.09005 * 109.46721 * 83.06051 * 3 2 1 26 26 H 0.96998 * 120.00490 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.47257 * 59.99841 * 15 13 4 28 28 H 1.09002 * 109.47204 * 300.00061 * 15 13 4 29 29 H 0.97007 * 119.99581 * 359.97438 * 16 15 13 30 30 H 1.08005 * 120.02887 * 0.27763 * 18 17 16 31 31 H 1.08002 * 119.94966 * 179.97438 * 19 18 17 32 32 H 1.08009 * 119.91888 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.96697 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0968 -1.1030 0.8301 5 6 3.4432 -0.8765 2.1371 6 1 4.0928 -1.5691 2.6515 7 6 2.9584 0.2444 2.8000 8 7 1.8756 0.8481 2.3646 9 14 3.8462 0.8929 4.3102 10 1 5.2365 1.2654 3.9452 11 1 3.1329 2.0879 4.8285 12 1 3.8743 -0.1592 5.3578 13 6 3.2061 -2.3411 0.3089 14 8 3.6103 -3.2550 0.9963 15 6 2.8250 -2.5902 -1.1277 16 7 3.0319 -4.0043 -1.4497 17 6 2.7461 -4.4779 -2.7330 18 6 2.2652 -3.6095 -3.7043 19 6 1.9841 -4.0805 -4.9719 20 6 2.1803 -5.4154 -5.2749 21 6 2.6579 -6.2837 -4.3106 22 6 2.9413 -5.8193 -3.0400 23 17 3.5415 -6.9097 -1.8298 24 1 2.9709 0.9464 0.4025 25 1 2.9714 -0.1234 -1.0202 26 1 1.5369 1.6303 2.8275 27 1 3.4441 -1.9744 -1.7799 28 1 1.7757 -2.3343 -1.2749 29 1 3.3681 -4.6118 -0.7722 30 1 2.1159 -2.5658 -3.4700 31 1 1.6098 -3.4054 -5.7272 32 1 1.9592 -5.7808 -6.2669 33 1 2.8104 -7.3256 -4.5507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060332043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:09 Heat of formation + Delta-G solvation = 9.418462 kcal Electronic energy + Delta-G solvation = -20338.912068 eV Core-core repulsion = 17004.355676 eV Total energy + Delta-G solvation = -3334.556392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.98807 -40.12171 -37.73879 -37.29746 -36.46241 -35.95041 -33.84657 -31.58662 -30.94261 -29.23280 -28.07156 -26.07713 -23.62541 -22.64820 -20.97851 -19.81456 -19.09839 -18.16686 -17.64313 -17.40657 -16.66828 -16.38153 -16.16781 -15.84883 -15.08627 -14.87484 -14.82926 -14.76626 -14.63168 -14.06655 -13.92198 -13.67240 -13.39164 -13.12728 -12.89942 -12.76459 -12.41974 -12.37906 -12.20872 -12.14063 -12.10731 -11.71910 -11.16157 -11.13366 -10.59868 -9.97878 -9.70115 -8.44985 -8.40258 -6.02713 0.35657 0.63251 1.31033 1.37538 1.48174 1.56433 1.72773 1.96515 2.23911 2.29664 2.41593 2.87442 2.96234 3.05597 3.54525 3.81814 3.89746 4.19389 4.22931 4.36367 4.49096 4.52713 4.60399 4.63761 4.85305 4.99331 5.22675 5.44549 5.45412 5.66110 5.82797 5.97631 6.23479 6.36112 6.62942 6.99805 7.04853 7.26769 7.79582 8.58501 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.004124 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.775380 B = 6788.407316 C = 7720.707940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.255 3.745 3 C 0.218 3.782 4 N -0.444 5.444 5 C -0.345 4.345 6 H 0.082 0.918 7 C 0.011 3.989 8 N -0.887 5.887 9 Si 0.986 3.014 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.285 1.285 13 C 0.439 3.561 14 O -0.612 6.612 15 C 0.120 3.880 16 N -0.737 5.737 17 C 0.212 3.788 18 C -0.202 4.202 19 C -0.061 4.061 20 C -0.171 4.171 21 C -0.067 4.067 22 C -0.138 4.138 23 Cl -0.089 7.089 24 H 0.126 0.874 25 H 0.146 0.854 26 H 0.276 0.724 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.403 0.597 30 H 0.141 0.859 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 -4.449 -16.193 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.063 4.063 3 C 0.091 3.909 4 N -0.164 5.164 5 C -0.472 4.472 6 H 0.100 0.900 7 C -0.192 4.192 8 N -0.525 5.525 9 Si 0.810 3.190 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.211 1.211 13 C 0.229 3.771 14 O -0.497 6.497 15 C -0.007 4.007 16 N -0.368 5.368 17 C 0.106 3.894 18 C -0.225 4.225 19 C -0.080 4.080 20 C -0.191 4.191 21 C -0.086 4.086 22 C -0.169 4.169 23 Cl -0.061 7.061 24 H 0.144 0.856 25 H 0.163 0.837 26 H 0.086 0.914 27 H 0.137 0.863 28 H 0.101 0.899 29 H 0.241 0.759 30 H 0.159 0.841 31 H 0.175 0.825 32 H 0.174 0.826 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.781 -4.584 -15.616 16.372 hybrid contribution 0.694 -0.035 1.952 2.072 sum 2.474 -4.619 -13.664 14.635 Atomic orbital electron populations 1.80923 1.14763 1.10010 1.12700 1.29695 0.95767 0.91412 0.89423 1.19153 0.80177 0.94180 0.97362 1.43694 1.55939 1.05855 1.10872 1.19564 1.28980 1.09884 0.88762 0.89976 1.25889 0.94856 0.97082 1.01393 1.69901 1.18227 1.21440 1.42932 0.85093 0.79039 0.77277 0.77545 1.18264 1.20418 1.21065 1.20800 0.83379 0.82491 0.90433 1.90520 1.52153 1.43485 1.63575 1.21068 1.02229 0.84245 0.93198 1.44679 1.72218 1.09239 1.10691 1.17882 0.94333 0.91471 0.85703 1.20955 1.07805 1.00030 0.93664 1.21379 0.94963 0.96237 0.95384 1.21225 1.04160 0.93357 1.00339 1.21082 0.96369 1.01272 0.89858 1.20639 1.13954 0.89483 0.92829 1.98337 1.87289 1.63598 1.56830 0.85607 0.83691 0.91382 0.86264 0.89884 0.75876 0.84079 0.82543 0.82647 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.55 18.54 20.01 0.37 -22.18 16 2 C 0.25 10.27 12.82 89.44 1.15 11.42 16 3 C 0.22 7.53 4.91 84.58 0.42 7.95 16 4 N -0.44 -19.42 2.60 -645.43 -1.68 -21.09 16 5 C -0.34 -17.25 9.27 84.04 0.78 -16.47 16 6 H 0.08 4.47 7.43 -2.91 -0.02 4.45 16 7 C 0.01 0.52 4.84 84.93 0.41 0.94 16 8 N -0.89 -42.75 9.58 21.66 0.21 -42.54 16 9 Si 0.99 38.80 29.60 68.60 2.03 40.84 16 10 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 11 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.44 18.98 7.63 87.66 0.67 19.64 16 14 O -0.61 -31.69 15.34 -3.07 -0.05 -31.73 16 15 C 0.12 3.84 4.00 85.63 0.34 4.18 16 16 N -0.74 -24.57 5.66 -343.04 -1.94 -26.51 16 17 C 0.21 6.03 6.65 38.21 0.25 6.28 16 18 C -0.20 -4.58 9.31 22.40 0.21 -4.38 16 19 C -0.06 -1.07 10.04 22.25 0.22 -0.84 16 20 C -0.17 -2.88 10.04 22.29 0.22 -2.66 16 21 C -0.07 -1.40 9.82 22.27 0.22 -1.18 16 22 C -0.14 -3.74 6.34 22.44 0.14 -3.59 16 23 Cl -0.09 -2.56 27.60 -2.72 -0.08 -2.64 16 24 H 0.13 4.46 6.63 -2.39 -0.02 4.45 16 25 H 0.15 3.25 6.69 -2.38 -0.02 3.24 16 26 H 0.28 12.92 8.31 -92.71 -0.77 12.15 16 27 H 0.12 2.85 7.22 -2.39 -0.02 2.83 16 28 H 0.08 2.59 7.30 -2.39 -0.02 2.57 16 29 H 0.40 15.33 6.11 -92.70 -0.57 14.76 16 30 H 0.14 2.79 6.74 -2.91 -0.02 2.77 16 31 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 32 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -66.06 306.52 4.51 -61.55 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.61 Total: 23.01 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 5.03 Total: 21.30 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -3.04 Total: -112.32 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.05 Total: -31.73 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.84 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.08 Total: -2.64 kcal Total: -66.06 4.51 -61.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.965 kcal (2) G-P(sol) polarization free energy of solvation -66.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds