Wall clock time and date at job start Tue Mar 31 2020 06:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48509 * 109.46837 * 30.00038 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37882 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99533 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46999 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.47091 * 179.97438 * 10 9 7 12 12 C 1.34841 * 116.99897 * 179.97438 * 11 10 9 13 13 O 1.21597 * 120.00046 * 0.02562 * 12 11 10 14 14 C 1.46734 * 119.99692 * 180.02562 * 12 11 10 15 15 C 1.36462 * 126.78096 * 359.68277 * 14 12 11 16 16 N 1.35431 * 109.76259 * 179.86345 * 15 14 12 17 17 H 0.96991 * 124.77590 * 180.17197 * 16 15 14 18 18 C 1.37984 * 110.44387 * 0.42056 * 16 15 14 19 19 C 1.39112 * 133.15981 * 179.72886 * 18 16 15 20 20 C 1.37875 * 119.92035 * 180.02562 * 19 18 16 21 21 Cl 1.73598 * 119.69897 * 179.97438 * 20 19 18 22 22 C 1.38859 * 120.60183 * 359.97438 * 20 19 18 23 23 C 1.37751 * 120.28263 * 0.02562 * 22 20 19 24 24 C 1.39257 * 119.69528 * 0.02562 * 23 22 20 25 25 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47510 * 60.00274 * 9 7 2 27 27 H 1.09004 * 109.47043 * 300.00089 * 9 7 2 28 28 H 1.09001 * 109.47142 * 59.99811 * 10 9 7 29 29 H 1.09004 * 109.47006 * 299.99757 * 10 9 7 30 30 H 1.08001 * 125.11597 * 0.02945 * 15 14 12 31 31 H 1.08001 * 120.03953 * 0.04030 * 19 18 16 32 32 H 1.07995 * 119.85494 * 180.02562 * 22 20 19 33 33 H 1.08004 * 120.14723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 8 5.4735 -2.6368 0.0009 12 6 6.0856 -3.8382 0.0014 13 8 5.4233 -4.8580 0.0013 14 6 7.5509 -3.9150 0.0019 15 6 8.4241 -2.8664 -0.0040 16 7 9.6966 -3.3300 0.0018 17 1 10.4891 -2.7708 0.0016 18 6 9.7068 -4.7098 0.0023 19 6 10.7286 -5.6538 0.0023 20 6 10.4229 -6.9982 0.0023 21 17 11.7025 -8.1713 0.0017 22 6 9.1007 -7.4224 0.0029 23 6 8.0758 -6.5019 0.0029 24 6 8.3709 -5.1410 0.0018 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6802 0.8911 27 1 3.8752 -0.6805 -0.8889 28 1 3.6584 -3.1503 -0.8892 29 1 3.6578 -3.1507 0.8908 30 1 8.1427 -1.8237 -0.0095 31 1 11.7602 -5.3339 0.0025 32 1 8.8749 -8.4785 0.0034 33 1 7.0482 -6.8343 0.0037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064199118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:51 Heat of formation + Delta-G solvation = -64.285931 kcal Electronic energy + Delta-G solvation = -19561.841602 eV Core-core repulsion = 16191.796397 eV Total energy + Delta-G solvation = -3370.045205 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.60601 -40.93269 -38.55462 -37.53401 -37.01291 -35.35178 -33.33263 -32.65430 -30.80466 -30.09350 -27.27654 -24.67975 -24.22516 -22.93922 -22.53684 -21.09200 -19.40514 -19.02990 -18.12397 -17.46190 -17.41767 -17.10467 -16.57059 -16.24366 -15.84707 -15.55719 -14.96716 -14.95433 -14.78404 -14.30995 -14.09870 -13.86750 -13.26360 -13.12845 -13.00697 -12.52735 -12.44678 -12.40120 -12.07276 -11.93337 -11.78152 -11.52657 -11.43544 -11.39138 -10.84817 -10.78517 -9.43282 -8.97318 -8.31832 -6.40325 -0.24464 0.18735 0.73948 1.01869 1.40557 1.43029 1.55561 1.69726 2.06717 2.06928 2.37268 2.65464 3.03100 3.54127 3.70664 3.75909 4.03555 4.18512 4.21681 4.25120 4.32234 4.42565 4.48227 4.67914 4.78635 5.07093 5.09798 5.19972 5.30669 5.33382 5.42009 5.54284 5.61729 5.77060 6.18428 6.40614 6.66093 6.85822 7.24563 8.84475 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.043968 B = 0.002695 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.678641 B =10386.836486 C =11003.067532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.238 1.238 7 C -0.544 4.544 8 H 0.031 0.969 9 C -0.001 4.001 10 C 0.096 3.904 11 O -0.355 6.355 12 C 0.529 3.471 13 O -0.556 6.556 14 C -0.268 4.268 15 C 0.189 3.811 16 N -0.549 5.549 17 H 0.448 0.552 18 C 0.091 3.909 19 C -0.099 4.099 20 C -0.027 4.027 21 Cl -0.058 7.058 22 C -0.123 4.123 23 C -0.080 4.080 24 C -0.080 4.080 25 H 0.270 0.730 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.229 0.771 31 H 0.166 0.834 32 H 0.149 0.851 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.504 -7.680 0.007 31.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.190 4.190 3 Si 0.780 3.220 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.161 1.161 7 C -0.582 4.582 8 H 0.050 0.950 9 C -0.038 4.038 10 C 0.023 3.977 11 O -0.271 6.271 12 C 0.377 3.623 13 O -0.449 6.449 14 C -0.276 4.276 15 C 0.053 3.947 16 N -0.152 5.152 17 H 0.291 0.709 18 C -0.015 4.015 19 C -0.120 4.120 20 C -0.055 4.055 21 Cl -0.029 7.029 22 C -0.142 4.142 23 C -0.099 4.099 24 C -0.084 4.084 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.245 0.755 31 H 0.183 0.817 32 H 0.167 0.833 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 30.381 -7.895 0.012 31.390 hybrid contribution -0.598 0.304 -0.023 0.671 sum 29.783 -7.591 -0.010 30.735 Atomic orbital electron populations 1.70058 1.08486 1.28617 1.51486 1.26024 0.95709 1.03816 0.93408 0.85549 0.79667 0.77249 0.79551 1.18751 1.20888 1.16120 1.21145 0.90953 0.93696 1.52359 0.95024 1.19449 0.93903 0.91735 0.98718 1.22911 0.74108 0.99879 1.00843 1.86486 1.24225 1.32354 1.84058 1.20530 0.88718 0.81157 0.71907 1.90789 1.67771 1.37239 1.49115 1.19061 0.88140 0.94377 1.25992 1.22863 0.81685 1.00223 0.89935 1.41558 1.08605 1.04351 1.60703 0.70926 1.17937 0.93503 0.84457 1.05558 1.20013 0.99085 0.89056 1.03827 1.20488 0.89289 0.90019 1.05693 1.98375 1.49860 1.57709 1.96952 1.21004 0.90076 1.00894 1.02254 1.20615 0.99813 0.90934 0.98510 1.19021 0.92190 0.92911 1.04247 0.92116 0.94265 0.94380 0.92852 0.92858 0.75515 0.81682 0.83299 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 2 C 0.01 0.46 5.47 84.66 0.46 0.93 16 3 Si 0.96 42.50 27.47 68.60 1.88 44.38 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 7 C -0.54 -31.48 9.66 25.60 0.25 -31.23 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C 0.00 -0.03 4.42 29.85 0.13 0.10 16 10 C 0.10 4.17 5.42 71.98 0.39 4.56 16 11 O -0.35 -12.99 10.05 -57.54 -0.58 -13.57 16 12 C 0.53 18.88 7.93 70.04 0.56 19.44 16 13 O -0.56 -23.65 15.95 19.52 0.31 -23.34 16 14 C -0.27 -7.10 6.27 -19.03 -0.12 -7.22 16 15 C 0.19 2.94 11.62 83.72 0.97 3.91 16 16 N -0.55 -5.83 5.99 -187.05 -1.12 -6.95 16 17 H 0.45 0.71 8.96 -92.72 -0.83 -0.12 16 18 C 0.09 1.56 7.25 38.91 0.28 1.84 16 19 C -0.10 -1.42 9.83 22.39 0.22 -1.20 16 20 C -0.03 -0.46 6.31 22.33 0.14 -0.32 16 21 Cl -0.06 -0.85 28.93 -2.72 -0.08 -0.93 16 22 C -0.12 -2.43 9.81 22.30 0.22 -2.22 16 23 C -0.08 -2.02 9.85 22.40 0.22 -1.80 16 24 C -0.08 -2.00 6.27 -20.07 -0.13 -2.13 16 25 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.04 1.75 7.20 -2.39 -0.02 1.73 16 27 H 0.04 1.67 7.57 -2.38 -0.02 1.66 16 28 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.05 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.23 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 32 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.12 3.54 7.45 -2.91 -0.02 3.52 16 Total: -1.00 -75.95 311.14 4.59 -71.36 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 0.27 Total: 3.03 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 3.60 Total: -15.33 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -0.82 Total: -65.61 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.27 Total: -36.91 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.38 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -75.95 4.59 -71.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064199118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.074 kcal (2) G-P(sol) polarization free energy of solvation -75.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds