Wall clock time and date at job start Tue Mar 31 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.37996 * 119.99737 * 275.27816 * 12 2 1 14 14 N 1.28896 * 124.82074 * 359.74577 * 13 12 2 15 15 C 1.34820 * 117.88042 * 179.97438 * 14 13 12 16 16 C 1.41087 * 128.73299 * 179.97438 * 15 14 13 17 17 C 1.37209 * 120.43587 * 180.02562 * 16 15 14 18 18 C 1.38710 * 120.59305 * 0.02562 * 17 16 15 19 19 N 1.48021 * 120.01104 * 180.02562 * 18 17 16 20 20 O 1.21803 * 120.00245 * 179.97438 * 19 18 17 21 21 O 1.21804 * 120.00048 * 359.97438 * 19 18 17 22 22 C 1.37725 * 119.97825 * 359.97438 * 18 17 16 23 23 C 1.39258 * 120.20381 * 0.02562 * 22 18 17 24 24 S 1.75805 * 124.81757 * 179.44619 * 13 12 2 25 25 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 27 27 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 28 28 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 30 30 H 1.08001 * 119.78867 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.70119 * 179.97438 * 17 16 15 32 32 H 1.08005 * 119.89526 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1447 -0.0037 2.3862 14 7 1.8651 1.2440 2.5491 15 6 2.0405 1.7744 3.7761 16 6 1.8101 3.0980 4.2068 17 6 2.0493 3.4567 5.5094 18 6 2.5215 2.5256 6.4227 19 7 2.7747 2.9264 7.8249 20 8 3.1889 2.1086 8.6269 21 8 2.5688 4.0742 8.1769 22 6 2.7537 1.2277 6.0246 23 6 2.5164 0.8461 4.7065 24 16 2.7027 -0.7079 3.8974 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7088 1.1614 -3.4844 29 1 2.2490 -1.6319 1.1525 30 1 1.4436 3.8341 3.5065 31 1 1.8692 4.4734 5.8262 32 1 3.1210 0.5037 6.7369 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066466125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:54 Heat of formation + Delta-G solvation = 51.186740 kcal Electronic energy + Delta-G solvation = -19868.942425 eV Core-core repulsion = 16538.240948 eV Total energy + Delta-G solvation = -3330.701477 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10661 -40.25852 -37.73276 -36.50994 -35.54157 -32.98365 -31.50243 -30.41672 -29.06729 -26.08796 -25.47578 -24.14539 -22.82633 -21.99415 -20.20196 -19.55387 -18.85991 -18.38832 -17.47736 -16.95866 -16.43123 -15.82462 -15.25857 -15.00318 -14.80796 -14.25738 -13.88532 -13.48671 -13.00795 -12.77220 -12.73722 -11.97402 -11.55153 -11.33965 -11.25050 -11.18352 -11.13307 -11.11706 -11.01196 -10.59878 -10.45943 -10.36462 -9.81190 -9.41938 -9.31456 -8.74673 -8.41157 -7.59769 -6.38590 -4.50204 -0.25632 0.78535 0.85398 1.07603 1.40820 1.61449 2.36337 3.08596 3.17032 3.19009 3.36037 3.45114 4.11171 4.25910 4.47651 4.59166 4.73638 4.95124 5.00157 5.37095 5.49649 5.72593 5.86564 6.08941 6.43348 6.45257 6.67438 6.74229 6.90572 7.18503 7.35372 7.53677 7.70476 7.79371 7.82210 8.15033 8.54389 9.17914 10.67110 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.038296 B = 0.003268 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.974317 B = 8566.081182 C = 9012.610272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.268 3.732 3 H 0.060 0.940 4 C -0.544 4.544 5 H 0.065 0.935 6 C 0.071 3.929 7 N -0.879 5.879 8 Si 0.906 3.094 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.637 5.637 13 C 0.420 3.580 14 N -0.559 5.559 15 C 0.215 3.785 16 C -0.098 4.098 17 C -0.039 4.039 18 C -0.081 4.081 19 N 0.043 4.957 20 O -0.179 6.179 21 O -0.170 6.170 22 C 0.030 3.970 23 C -0.225 4.225 24 S 0.029 5.971 25 H 0.030 0.970 26 H 0.019 0.981 27 H 0.097 0.903 28 H 0.268 0.732 29 H 0.411 0.589 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -0.192 11.501 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.166 3.834 3 H 0.078 0.922 4 C -0.583 4.583 5 H 0.083 0.917 6 C -0.133 4.133 7 N -0.515 5.515 8 Si 0.733 3.267 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.265 5.265 13 C 0.043 3.957 14 N -0.287 5.287 15 C 0.087 3.913 16 C -0.121 4.121 17 C -0.061 4.061 18 C -0.169 4.169 19 N 0.558 4.442 20 O -0.391 6.391 21 O -0.384 6.384 22 C 0.006 3.994 23 C -0.347 4.347 24 S 0.279 5.721 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.248 0.752 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.559 -1.045 10.204 10.375 hybrid contribution 0.288 0.039 -0.320 0.433 sum 1.848 -1.006 9.884 10.105 Atomic orbital electron populations 1.22133 0.97501 0.99641 1.01499 1.19205 0.91597 0.94245 0.78365 0.92183 1.21157 1.33441 1.13821 0.89873 0.91710 1.24859 0.94479 0.94871 0.99135 1.69880 1.35180 1.22129 1.24337 0.86311 0.78724 0.79524 0.82109 1.19626 1.20643 1.20636 1.45626 1.62665 1.12513 1.05690 1.24335 0.90610 0.89679 0.91110 1.66516 1.32419 1.09343 1.20437 1.19322 0.91231 0.94496 0.86268 1.20502 1.02976 0.93721 0.94884 1.20563 0.94548 0.99746 0.91274 1.20497 1.17847 0.96310 0.82245 1.43442 0.97451 1.00316 1.02963 1.94516 1.47701 1.47995 1.48872 1.94512 1.55954 1.04572 1.83408 1.19845 0.92203 0.93814 0.93571 1.23018 1.15418 0.97825 0.98408 1.85018 1.73359 1.09210 1.04560 0.95128 0.96236 0.88466 0.92229 0.75177 0.82835 0.82651 0.83136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.27 37.16 0.34 -2.91 16 2 C 0.27 5.93 2.68 -69.08 -0.19 5.75 16 3 H 0.06 1.52 7.75 -51.93 -0.40 1.11 16 4 C -0.54 -12.98 8.73 -34.44 -0.30 -13.28 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -22.63 11.32 55.43 0.63 -22.00 16 8 Si 0.91 19.14 29.54 -169.99 -5.02 14.12 16 9 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 N -0.64 -11.41 5.20 -55.96 -0.29 -11.70 16 13 C 0.42 7.12 8.22 -88.92 -0.73 6.39 16 14 N -0.56 -10.11 9.88 -11.17 -0.11 -10.22 16 15 C 0.22 3.34 6.94 -84.90 -0.59 2.75 16 16 C -0.10 -1.26 10.10 -38.88 -0.39 -1.66 16 17 C -0.04 -0.45 9.51 -39.78 -0.38 -0.83 16 18 C -0.08 -1.06 6.85 -79.96 -0.55 -1.61 16 19 N 0.04 0.62 4.45 33.96 0.15 0.77 16 20 O -0.18 -2.66 18.44 -29.46 -0.54 -3.20 16 21 O -0.17 -2.49 18.45 -29.46 -0.54 -3.03 16 22 C 0.03 0.38 9.57 -39.39 -0.38 0.00 16 23 C -0.23 -3.18 6.52 -38.63 -0.25 -3.43 16 24 S 0.03 0.40 23.39 -107.50 -2.51 -2.12 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.41 6.37 8.66 -40.82 -0.35 6.01 16 30 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.16 1.48 7.60 -52.49 -0.40 1.08 16 32 H 0.15 1.67 7.60 -52.48 -0.40 1.27 16 LS Contribution 303.74 15.07 4.58 4.58 Total: -1.00 -26.17 303.74 -9.85 -36.02 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -2.68 Total: 3.96 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.50 Total: -7.18 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.38 Total: -43.15 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -1.09 Total: -6.24 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.51 Total: -2.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.17 -9.85 -36.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066466125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.208 kcal (2) G-P(sol) polarization free energy of solvation -26.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds