Wall clock time and date at job start Tue Mar 31 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.37996 * 119.99737 * 275.27816 * 12 2 1 14 14 N 1.28896 * 124.82074 * 359.74577 * 13 12 2 15 15 C 1.34820 * 117.88042 * 179.97438 * 14 13 12 16 16 C 1.41087 * 128.73299 * 179.97438 * 15 14 13 17 17 C 1.37209 * 120.43587 * 180.02562 * 16 15 14 18 18 C 1.38710 * 120.59305 * 0.02562 * 17 16 15 19 19 N 1.48021 * 120.01104 * 180.02562 * 18 17 16 20 20 O 1.21803 * 120.00245 * 179.97438 * 19 18 17 21 21 O 1.21804 * 120.00048 * 359.97438 * 19 18 17 22 22 C 1.37725 * 119.97825 * 359.97438 * 18 17 16 23 23 C 1.39258 * 120.20381 * 0.02562 * 22 18 17 24 24 S 1.75805 * 124.81757 * 179.44619 * 13 12 2 25 25 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 27 27 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 28 28 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 30 30 H 1.08001 * 119.78867 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.70119 * 179.97438 * 17 16 15 32 32 H 1.08005 * 119.89526 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1447 -0.0037 2.3862 14 7 1.8651 1.2440 2.5491 15 6 2.0405 1.7744 3.7761 16 6 1.8101 3.0980 4.2068 17 6 2.0493 3.4567 5.5094 18 6 2.5215 2.5256 6.4227 19 7 2.7747 2.9264 7.8249 20 8 3.1889 2.1086 8.6269 21 8 2.5688 4.0742 8.1769 22 6 2.7537 1.2277 6.0246 23 6 2.5164 0.8461 4.7065 24 16 2.7027 -0.7079 3.8974 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7088 1.1614 -3.4844 29 1 2.2490 -1.6319 1.1525 30 1 1.4436 3.8341 3.5065 31 1 1.8692 4.4734 5.8262 32 1 3.1210 0.5037 6.7369 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066466125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:54 Heat of formation + Delta-G solvation = 38.203715 kcal Electronic energy + Delta-G solvation = -19869.505411 eV Core-core repulsion = 16538.240948 eV Total energy + Delta-G solvation = -3331.264463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.22560 -41.41496 -39.01544 -37.64603 -36.96183 -34.65130 -32.54694 -31.77606 -30.56008 -27.49121 -27.07140 -25.30649 -24.04196 -23.36932 -21.57379 -20.66862 -20.10514 -19.60878 -18.59205 -18.42003 -17.83511 -17.04310 -16.80286 -16.24092 -16.12787 -15.50994 -15.08669 -14.67894 -14.54156 -14.26109 -13.83402 -13.54819 -13.01489 -12.89162 -12.75861 -12.69510 -12.34350 -12.31192 -12.26614 -12.20543 -12.13956 -11.42808 -11.25431 -11.02327 -10.70320 -10.54126 -9.47277 -8.90872 -8.23397 -6.40599 -1.39253 -0.32086 -0.25275 -0.07938 0.25851 0.50344 1.19667 1.42438 1.45555 1.55359 2.10609 2.32983 2.39730 3.08444 3.14460 3.36025 3.55943 3.67357 3.93084 4.37839 4.42952 4.66494 4.68361 4.81935 4.92497 5.00644 5.05233 5.29305 5.35486 5.53306 5.67920 5.84387 6.05467 6.26587 6.54680 6.63373 6.92629 7.31252 8.82236 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.038296 B = 0.003268 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.974317 B = 8566.081182 C = 9012.610272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.282 3.718 3 H 0.021 0.979 4 C -0.553 4.553 5 H 0.073 0.927 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.968 3.032 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.284 1.284 12 N -0.645 5.645 13 C 0.397 3.603 14 N -0.592 5.592 15 C 0.187 3.813 16 C -0.096 4.096 17 C -0.026 4.026 18 C -0.081 4.081 19 N 0.042 4.958 20 O -0.189 6.189 21 O -0.171 6.171 22 C 0.034 3.966 23 C -0.236 4.236 24 S 0.099 5.901 25 H 0.037 0.963 26 H 0.020 0.980 27 H 0.070 0.930 28 H 0.267 0.733 29 H 0.422 0.578 30 H 0.167 0.833 31 H 0.182 0.818 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -0.817 12.817 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.178 3.822 3 H 0.039 0.961 4 C -0.591 4.591 5 H 0.091 0.909 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.793 3.207 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.210 1.210 12 N -0.277 5.277 13 C 0.020 3.980 14 N -0.321 5.321 15 C 0.060 3.940 16 C -0.118 4.118 17 C -0.049 4.049 18 C -0.168 4.168 19 N 0.556 4.444 20 O -0.399 6.399 21 O -0.386 6.386 22 C 0.011 3.989 23 C -0.357 4.357 24 S 0.349 5.651 25 H 0.056 0.944 26 H 0.040 0.960 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.260 0.740 30 H 0.184 0.816 31 H 0.199 0.801 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.248 -1.683 11.591 11.926 hybrid contribution 0.109 0.332 -0.510 0.618 sum 2.358 -1.351 11.081 11.410 Atomic orbital electron populations 1.21934 0.97695 0.99577 1.00212 1.18644 0.91334 0.92465 0.79801 0.96102 1.21521 1.33049 1.13888 0.90660 0.90918 1.25655 0.94742 0.95500 1.01946 1.70011 1.36480 1.23550 1.24757 0.85359 0.78098 0.78561 0.78708 1.18614 1.20555 1.20993 1.45088 1.64481 1.12824 1.05298 1.24436 0.91332 0.90143 0.92073 1.66490 1.32759 1.10536 1.22331 1.19584 0.92679 0.95804 0.85902 1.20711 1.02451 0.93119 0.95525 1.20802 0.93067 1.00666 0.90353 1.20669 1.17569 0.96785 0.81787 1.43574 0.97281 1.00230 1.03266 1.94520 1.48115 1.48007 1.49267 1.94511 1.55828 1.04638 1.83605 1.19998 0.91522 0.94171 0.93249 1.23228 1.15367 0.98301 0.98761 1.84718 1.71816 1.07499 1.01039 0.94415 0.96047 0.91094 0.92370 0.73950 0.81595 0.80120 0.81306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.05 9.27 71.98 0.67 -5.39 16 2 C 0.28 12.78 2.68 44.25 0.12 12.90 16 3 H 0.02 1.11 7.75 -2.39 -0.02 1.09 16 4 C -0.55 -26.57 8.73 25.60 0.22 -26.34 16 5 H 0.07 3.29 7.74 -2.91 -0.02 3.27 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -48.08 11.32 21.45 0.24 -47.84 16 8 Si 0.97 39.27 29.54 68.60 2.03 41.30 16 9 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 10 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 12 N -0.65 -23.20 5.20 -330.97 -1.72 -24.92 16 13 C 0.40 13.33 8.22 179.75 1.48 14.81 16 14 N -0.59 -21.50 9.88 -189.24 -1.87 -23.37 16 15 C 0.19 5.63 6.94 39.76 0.28 5.91 16 16 C -0.10 -2.32 10.10 22.73 0.23 -2.09 16 17 C -0.03 -0.55 9.51 22.14 0.21 -0.34 16 18 C -0.08 -1.91 6.85 36.37 0.25 -1.66 16 19 N 0.04 1.11 4.45 -46.48 -0.21 0.91 16 20 O -0.19 -5.21 18.44 18.88 0.35 -4.86 16 21 O -0.17 -4.58 18.45 18.88 0.35 -4.24 16 22 C 0.03 0.79 9.57 22.39 0.21 1.01 16 23 C -0.24 -6.21 6.52 22.89 0.15 -6.06 16 24 S 0.10 2.49 23.39 -56.49 -1.32 1.17 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 3.56 6.07 -2.38 -0.01 3.54 16 28 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 29 H 0.42 12.86 8.66 -92.71 -0.80 12.06 16 30 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.18 2.86 7.60 -2.91 -0.02 2.83 16 32 H 0.17 3.24 7.60 -2.91 -0.02 3.21 16 Total: -1.00 -56.27 303.74 2.50 -53.77 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.39 Total: 13.77 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.27 Total: -5.68 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -3.55 Total: -95.23 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.70 Total: -9.09 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.32 Total: 1.17 kcal Total: -56.27 2.50 -53.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066466125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.976 kcal (2) G-P(sol) polarization free energy of solvation -56.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds