Wall clock time and date at job start Tue Mar 31 2020 06:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86798 * 119.99817 * 2 1 4 4 H 1.48493 * 109.47138 * 239.99716 * 3 2 1 5 5 H 1.48503 * 109.47478 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47375 * 119.99736 * 3 2 1 7 7 C 1.39861 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99937 * 195.19685 * 7 2 1 9 9 C 1.41133 * 120.00212 * 15.20178 * 7 2 1 10 10 C 1.40884 * 120.15879 * 205.15622 * 9 7 2 11 11 C 1.36335 * 119.83942 * 180.02562 * 10 9 7 12 12 C 1.39570 * 120.16119 * 359.97438 * 11 10 9 13 13 N 1.38857 * 119.84358 * 179.97438 * 12 11 10 14 14 S 1.65605 * 119.99853 * 74.07167 * 13 12 11 15 15 O 1.42101 * 106.40377 * 309.32100 * 14 13 12 16 16 O 1.42097 * 106.39973 * 176.39792 * 14 13 12 17 17 C 1.76205 * 107.21531 * 62.86049 * 14 13 12 18 18 C 1.34662 * 126.58684 * 264.54352 * 17 14 13 19 19 N 1.34138 * 108.01647 * 179.74711 * 18 17 14 20 20 C 1.30495 * 109.25636 * 0.37047 * 19 18 17 21 21 N 1.35039 * 108.69842 * 359.62880 * 20 19 18 22 22 H 0.96998 * 126.39998 * 180.21059 * 21 20 19 23 23 C 1.39569 * 120.31486 * 0.25803 * 12 11 10 24 24 C 1.36336 * 120.15614 * 359.47945 * 23 12 11 25 25 H 0.96994 * 120.00058 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.07985 * 359.97438 * 10 9 7 27 27 H 1.08004 * 119.92338 * 179.97438 * 11 10 9 28 28 H 0.97000 * 120.00335 * 254.07146 * 13 12 11 29 29 H 1.08003 * 125.99700 * 359.92994 * 18 17 14 30 30 H 1.08004 * 125.65093 * 179.89792 * 20 19 18 31 31 H 1.07997 * 119.91601 * 179.72256 * 23 12 11 32 32 H 1.08002 * 120.07757 * 180.23258 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0967 1.6964 -1.2124 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0083 -1.2112 0.0005 8 1 3.0600 -1.2275 0.2457 9 6 1.3398 -2.4123 -0.3194 10 6 1.8251 -3.6431 0.1647 11 6 1.1744 -4.7994 -0.1489 12 6 0.0298 -4.7658 -0.9469 13 7 -0.6274 -5.9475 -1.2626 14 16 -1.5365 -6.7215 -0.1149 15 8 -0.7109 -6.8446 1.0351 16 8 -2.1379 -7.8340 -0.7627 17 6 -2.8502 -5.6347 0.3298 18 6 -2.8695 -4.7835 1.3731 19 7 -4.0441 -4.1360 1.3586 20 6 -4.7565 -4.5593 0.3506 21 7 -4.0471 -5.4929 -0.3191 22 1 -4.3323 -5.9736 -1.1119 23 6 -0.4539 -3.5506 -1.4340 24 6 0.1836 -2.3860 -1.1240 25 1 -0.4850 0.8400 -0.0004 26 1 2.7109 -3.6707 0.7820 27 1 1.5455 -5.7438 0.2212 28 1 -0.5541 -6.3198 -2.1553 29 1 -2.0768 -4.6442 2.0934 30 1 -5.7475 -4.2164 0.0921 31 1 -1.3375 -3.5325 -2.0546 32 1 -0.1940 -1.4460 -1.4986 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070415930.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:37 Heat of formation + Delta-G solvation = 3.848462 kcal Electronic energy + Delta-G solvation = -20973.781962 eV Core-core repulsion = 17641.027744 eV Total energy + Delta-G solvation = -3332.754219 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.91202 -38.05760 -36.88173 -35.57509 -34.85428 -32.89730 -32.52441 -29.74338 -29.58707 -28.80240 -24.82281 -22.43623 -21.43737 -21.21421 -20.84828 -19.81509 -18.53883 -17.48608 -17.30663 -16.61164 -15.70675 -15.41264 -14.93209 -14.88713 -14.17739 -14.05818 -13.70798 -13.43554 -12.88579 -12.47746 -12.17567 -11.90558 -11.76331 -11.69728 -11.51904 -11.39583 -11.23855 -10.91972 -10.83694 -10.13517 -10.07475 -9.96929 -9.85076 -9.32679 -9.04994 -8.89978 -7.70227 -7.41697 -6.92606 -4.52219 0.65123 1.62022 2.55562 2.98245 2.99670 3.01113 3.01554 3.08721 3.11082 3.50128 3.80328 4.01308 4.43193 4.63394 4.77728 5.24548 5.50200 5.54449 5.85026 6.12746 6.21483 6.30930 6.63046 6.84291 6.90045 7.02612 7.17344 7.23845 7.28797 7.46279 7.86610 7.89951 7.90652 7.96467 8.12069 8.45508 8.70061 8.80235 9.98944 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021394 B = 0.005208 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.454789 B = 5374.709925 C = 6187.352705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.444 4.444 8 H 0.082 0.918 9 C 0.119 3.881 10 C -0.223 4.223 11 C -0.061 4.061 12 C -0.041 4.041 13 N -1.026 6.026 14 S 2.700 3.300 15 O -0.941 6.941 16 O -0.984 6.984 17 C -0.588 4.588 18 C 0.117 3.883 19 N -0.500 5.500 20 C 0.226 3.774 21 N -0.522 5.522 22 H 0.424 0.576 23 C -0.081 4.081 24 C -0.164 4.164 25 H 0.285 0.715 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.407 0.593 29 H 0.186 0.814 30 H 0.215 0.785 31 H 0.087 0.913 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 -5.379 -3.386 8.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.473 4.473 8 H 0.101 0.899 9 C 0.116 3.884 10 C -0.243 4.243 11 C -0.082 4.082 12 C -0.138 4.138 13 N -0.781 5.781 14 S 2.788 3.212 15 O -0.930 6.930 16 O -0.974 6.974 17 C -0.784 4.784 18 C -0.037 4.037 19 N -0.219 5.219 20 C -0.061 4.061 21 N -0.124 5.124 22 H 0.263 0.737 23 C -0.102 4.102 24 C -0.185 4.185 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.244 0.756 29 H 0.203 0.797 30 H 0.232 0.768 31 H 0.105 0.895 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.719 -5.449 -2.268 8.943 hybrid contribution -0.133 0.600 -1.325 1.461 sum -6.852 -4.849 -3.593 9.131 Atomic orbital electron populations 1.69835 1.07615 1.29801 1.33118 1.26017 0.94854 1.01698 0.92187 0.86266 0.80091 0.79719 0.80164 1.18684 1.20192 1.18754 1.19678 0.97460 0.90945 1.39210 0.89948 1.17758 0.90955 0.92203 0.87499 1.20669 1.03746 0.92561 1.07361 1.20596 0.93322 0.97597 0.96700 1.16578 0.99498 0.83415 1.14278 1.52168 1.62061 1.37048 1.26803 1.02479 0.72610 0.72176 0.73911 1.93597 1.64655 1.84744 1.50052 1.93512 1.78253 1.49709 1.75954 1.33869 1.07660 1.27110 1.09762 1.22473 0.95478 0.90220 0.95575 1.70412 1.04980 1.25837 1.20655 1.25541 0.99418 0.90284 0.90839 1.42942 1.12404 1.32306 1.24747 0.73665 1.20554 0.98051 0.92436 0.99200 1.20999 0.99135 0.96626 1.01700 0.90418 0.88275 0.88102 0.75600 0.79709 0.76830 0.89520 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.98 10.83 55.54 0.60 -18.38 16 2 C 0.07 1.69 5.19 -17.34 -0.09 1.60 16 3 Si 0.91 17.52 29.59 -169.99 -5.03 12.49 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.80 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.44 -10.96 9.04 -37.88 -0.34 -11.31 16 8 H 0.08 1.94 7.89 -52.49 -0.41 1.52 16 9 C 0.12 2.97 5.58 -106.80 -0.60 2.37 16 10 C -0.22 -5.16 9.74 -39.27 -0.38 -5.54 16 11 C -0.06 -1.32 9.19 -39.77 -0.37 -1.68 16 12 C -0.04 -0.83 5.80 -83.69 -0.49 -1.32 16 13 N -1.03 -16.97 5.65 32.51 0.18 -16.79 16 14 S 2.70 45.19 5.87 -107.50 -0.63 44.56 16 15 O -0.94 -18.49 16.75 -57.17 -0.96 -19.45 16 16 O -0.98 -16.93 18.02 -57.17 -1.03 -17.96 16 17 C -0.59 -9.57 7.17 -16.56 -0.12 -9.69 16 18 C 0.12 2.11 11.59 -17.81 -0.21 1.90 16 19 N -0.50 -8.56 11.25 -14.66 -0.16 -8.73 16 20 C 0.23 2.90 13.04 -90.38 -1.18 1.72 16 21 N -0.52 -6.69 6.15 -13.24 -0.08 -6.77 16 22 H 0.42 3.97 8.96 -40.82 -0.37 3.60 16 23 C -0.08 -1.74 9.90 -39.77 -0.39 -2.13 16 24 C -0.16 -3.96 8.63 -39.26 -0.34 -4.30 16 25 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 26 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 27 H 0.10 2.05 7.84 -52.48 -0.41 1.63 16 28 H 0.41 5.57 8.95 -34.47 -0.31 5.26 16 29 H 0.19 3.30 8.06 -52.48 -0.42 2.88 16 30 H 0.22 1.61 8.06 -52.48 -0.42 1.18 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.12 3.05 6.09 -52.49 -0.32 2.73 16 LS Contribution 300.57 15.07 4.53 4.53 Total: -1.00 -31.32 300.57 -9.72 -41.05 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -2.65 Total: 13.83 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -4.50 Total: -28.37 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.54 Total: -50.67 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.99 Total: -37.41 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 45.19 SS G_CDS: -0.63 Total: 44.56 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.32 -9.72 -41.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070415930.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.894 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds