Wall clock time and date at job start Tue Mar 31 2020 06:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86798 * 119.99817 * 2 1 4 4 H 1.48493 * 109.47138 * 239.99716 * 3 2 1 5 5 H 1.48503 * 109.47478 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47375 * 119.99736 * 3 2 1 7 7 C 1.39861 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99937 * 195.19685 * 7 2 1 9 9 C 1.41133 * 120.00212 * 15.20178 * 7 2 1 10 10 C 1.40884 * 120.15879 * 205.15622 * 9 7 2 11 11 C 1.36335 * 119.83942 * 180.02562 * 10 9 7 12 12 C 1.39570 * 120.16119 * 359.97438 * 11 10 9 13 13 N 1.38857 * 119.84358 * 179.97438 * 12 11 10 14 14 S 1.65605 * 119.99853 * 74.07167 * 13 12 11 15 15 O 1.42101 * 106.40377 * 309.32100 * 14 13 12 16 16 O 1.42097 * 106.39973 * 176.39792 * 14 13 12 17 17 C 1.76205 * 107.21531 * 62.86049 * 14 13 12 18 18 C 1.34662 * 126.58684 * 264.54352 * 17 14 13 19 19 N 1.34138 * 108.01647 * 179.74711 * 18 17 14 20 20 C 1.30495 * 109.25636 * 0.37047 * 19 18 17 21 21 N 1.35039 * 108.69842 * 359.62880 * 20 19 18 22 22 H 0.96998 * 126.39998 * 180.21059 * 21 20 19 23 23 C 1.39569 * 120.31486 * 0.25803 * 12 11 10 24 24 C 1.36336 * 120.15614 * 359.47945 * 23 12 11 25 25 H 0.96994 * 120.00058 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.07985 * 359.97438 * 10 9 7 27 27 H 1.08004 * 119.92338 * 179.97438 * 11 10 9 28 28 H 0.97000 * 120.00335 * 254.07146 * 13 12 11 29 29 H 1.08003 * 125.99700 * 359.92994 * 18 17 14 30 30 H 1.08004 * 125.65093 * 179.89792 * 20 19 18 31 31 H 1.07997 * 119.91601 * 179.72256 * 23 12 11 32 32 H 1.08002 * 120.07757 * 180.23258 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0967 1.6964 -1.2124 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0083 -1.2112 0.0005 8 1 3.0600 -1.2275 0.2457 9 6 1.3398 -2.4123 -0.3194 10 6 1.8251 -3.6431 0.1647 11 6 1.1744 -4.7994 -0.1489 12 6 0.0298 -4.7658 -0.9469 13 7 -0.6274 -5.9475 -1.2626 14 16 -1.5365 -6.7215 -0.1149 15 8 -0.7109 -6.8446 1.0351 16 8 -2.1379 -7.8340 -0.7627 17 6 -2.8502 -5.6347 0.3298 18 6 -2.8695 -4.7835 1.3731 19 7 -4.0441 -4.1360 1.3586 20 6 -4.7565 -4.5593 0.3506 21 7 -4.0471 -5.4929 -0.3191 22 1 -4.3323 -5.9736 -1.1119 23 6 -0.4539 -3.5506 -1.4340 24 6 0.1836 -2.3860 -1.1240 25 1 -0.4850 0.8400 -0.0004 26 1 2.7109 -3.6707 0.7820 27 1 1.5455 -5.7438 0.2212 28 1 -0.5541 -6.3198 -2.1553 29 1 -2.0768 -4.6442 2.0934 30 1 -5.7475 -4.2164 0.0921 31 1 -1.3375 -3.5325 -2.0546 32 1 -0.1940 -1.4460 -1.4986 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070415930.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:36 Heat of formation + Delta-G solvation = -18.292992 kcal Electronic energy + Delta-G solvation = -20974.742088 eV Core-core repulsion = 17641.027744 eV Total energy + Delta-G solvation = -3333.714344 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.08094 -39.77839 -38.34318 -37.04281 -36.51205 -34.57803 -33.70184 -31.43697 -30.88530 -30.54126 -26.57519 -23.64670 -22.97724 -22.70833 -22.49744 -21.04736 -19.91232 -19.26077 -18.74649 -18.15281 -17.14958 -16.95858 -16.28791 -16.10195 -15.74335 -15.45328 -15.33019 -14.66243 -14.57274 -14.08121 -13.88446 -13.36314 -13.35222 -13.24139 -13.15225 -12.91661 -12.84429 -12.56464 -12.38865 -11.70680 -11.60010 -11.29321 -11.26549 -11.04181 -10.64278 -10.15319 -9.48182 -9.19592 -8.66143 -6.36208 -0.74237 0.40377 0.85465 1.19309 1.41425 1.51429 1.54255 1.83937 1.94609 2.20846 2.24250 2.65048 2.69159 3.43591 3.65174 3.69497 4.15639 4.32223 4.42220 4.52288 4.60544 4.69933 5.07570 5.13438 5.28988 5.36500 5.39031 5.66814 5.79505 6.07433 6.12712 6.26489 6.29144 6.38980 6.66061 6.75109 6.89696 7.00906 8.27884 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021394 B = 0.005208 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.454789 B = 5374.709925 C = 6187.352705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.482 4.482 8 H 0.082 0.918 9 C 0.090 3.910 10 C -0.237 4.237 11 C -0.070 4.070 12 C -0.019 4.019 13 N -1.021 6.021 14 S 2.730 3.270 15 O -0.971 6.971 16 O -0.981 6.981 17 C -0.597 4.597 18 C 0.092 3.908 19 N -0.541 5.541 20 C 0.249 3.751 21 N -0.510 5.510 22 H 0.443 0.557 23 C -0.079 4.079 24 C -0.184 4.184 25 H 0.290 0.710 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.424 0.576 29 H 0.171 0.829 30 H 0.270 0.730 31 H 0.110 0.890 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.824 -5.907 -4.493 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.511 4.511 8 H 0.100 0.900 9 C 0.087 3.913 10 C -0.257 4.257 11 C -0.091 4.091 12 C -0.116 4.116 13 N -0.778 5.778 14 S 2.819 3.181 15 O -0.960 6.960 16 O -0.971 6.971 17 C -0.795 4.795 18 C -0.063 4.063 19 N -0.261 5.261 20 C -0.038 4.038 21 N -0.114 5.114 22 H 0.286 0.714 23 C -0.100 4.100 24 C -0.205 4.205 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.264 0.736 29 H 0.188 0.812 30 H 0.285 0.715 31 H 0.128 0.872 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.203 -6.007 -3.422 10.728 hybrid contribution 0.157 0.551 -1.002 1.154 sum -8.046 -5.456 -4.424 10.681 Atomic orbital electron populations 1.69888 1.08935 1.30860 1.34193 1.26798 0.95535 1.04626 0.91204 0.85215 0.78743 0.75457 0.80146 1.18253 1.19318 1.18452 1.19907 0.97749 0.92056 1.41412 0.90027 1.18073 0.91823 0.93025 0.88355 1.20828 1.04299 0.92809 1.07762 1.20822 0.93743 0.97642 0.96939 1.16502 0.98585 0.84251 1.12224 1.52031 1.62119 1.35708 1.27929 1.01196 0.72247 0.71721 0.72932 1.93568 1.65928 1.85290 1.51235 1.93520 1.78153 1.49497 1.75931 1.33495 1.08883 1.27073 1.10087 1.22458 0.96114 0.91438 0.96303 1.70380 1.05287 1.27283 1.23130 1.26556 1.00314 0.88249 0.88698 1.42941 1.11094 1.32257 1.25070 0.71437 1.20738 0.98340 0.91938 0.98993 1.20972 0.99767 0.97073 1.02652 0.89909 0.87859 0.86779 0.73630 0.81216 0.71492 0.87234 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.68 10.83 21.81 0.24 -40.44 16 2 C 0.03 1.66 5.19 85.22 0.44 2.11 16 3 Si 0.98 36.34 29.59 68.60 2.03 38.37 16 4 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.48 -24.71 9.04 23.37 0.21 -24.49 16 8 H 0.08 4.00 7.89 -2.91 -0.02 3.98 16 9 C 0.09 4.64 5.58 -21.27 -0.12 4.52 16 10 C -0.24 -11.23 9.74 22.47 0.22 -11.01 16 11 C -0.07 -3.03 9.19 22.15 0.20 -2.83 16 12 C -0.02 -0.76 5.80 38.67 0.22 -0.54 16 13 N -1.02 -31.59 5.65 -51.06 -0.29 -31.88 16 14 S 2.73 86.27 5.87 -56.49 -0.33 85.94 16 15 O -0.97 -37.33 16.75 -128.00 -2.14 -39.48 16 16 O -0.98 -30.93 18.02 -128.00 -2.31 -33.24 16 17 C -0.60 -18.36 7.17 83.09 0.60 -17.76 16 18 C 0.09 3.29 11.59 83.52 0.97 4.25 16 19 N -0.54 -17.79 11.25 -200.31 -2.25 -20.04 16 20 C 0.25 5.52 13.04 180.27 2.35 7.87 16 21 N -0.51 -11.39 6.15 -195.81 -1.20 -12.60 16 22 H 0.44 6.47 8.96 -92.71 -0.83 5.64 16 23 C -0.08 -3.33 9.90 22.15 0.22 -3.11 16 24 C -0.18 -9.07 8.63 22.47 0.19 -8.88 16 25 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 26 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 27 H 0.11 4.55 7.84 -2.91 -0.02 4.53 16 28 H 0.42 10.38 8.95 -96.74 -0.87 9.52 16 29 H 0.17 6.32 8.06 -2.91 -0.02 6.30 16 30 H 0.27 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 32 H 0.11 5.57 6.09 -2.91 -0.02 5.55 16 Total: -1.00 -68.84 300.57 -1.26 -70.10 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.50 Total: 33.14 kcal Atomic # 6 Polarization: -55.38 SS G_CDS: 5.51 Total: -49.87 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -3.51 Total: -104.96 kcal Atomic # 8 Polarization: -68.27 SS G_CDS: -4.45 Total: -72.72 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Atomic # 16 Polarization: 86.27 SS G_CDS: -0.33 Total: 85.94 kcal Total: -68.84 -1.26 -70.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070415930.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.806 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds