Wall clock time and date at job start Tue Mar 31 2020 07:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48510 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47040 * 299.99952 * 3 2 1 6 6 H 1.48495 * 109.47142 * 60.00347 * 3 2 1 7 7 C 1.37880 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00418 * 179.72589 * 7 2 1 9 9 C 1.50701 * 119.99890 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47293 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00148 * 66.04759 * 10 9 7 12 12 C 1.50695 * 109.47234 * 196.30730 * 11 10 9 13 13 C 1.33388 * 125.20537 * 84.51768 * 12 11 10 14 14 C 1.38425 * 114.92464 * 179.97438 * 13 12 11 15 15 C 1.33389 * 114.91965 * 359.97438 * 14 13 12 16 16 S 1.75881 * 125.20220 * 264.21076 * 12 11 10 17 17 C 1.46904 * 111.00044 * 190.00167 * 10 9 7 18 18 C 1.50701 * 109.46873 * 74.51164 * 17 10 9 19 19 C 1.33390 * 125.20136 * 84.41511 * 18 17 10 20 20 C 1.38427 * 114.92068 * 179.97438 * 19 18 17 21 21 C 1.33388 * 114.91810 * 0.02562 * 20 19 18 22 22 S 1.75884 * 125.20293 * 264.10432 * 18 17 10 23 23 H 0.97003 * 120.00035 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46995 * 300.00437 * 9 7 2 25 25 H 1.09002 * 109.47144 * 60.00028 * 9 7 2 26 26 H 1.09002 * 109.47031 * 316.30679 * 11 10 9 27 27 H 1.08999 * 109.47307 * 76.30327 * 11 10 9 28 28 H 1.07997 * 122.54023 * 359.94874 * 13 12 11 29 29 H 1.08000 * 122.54370 * 180.02562 * 14 13 12 30 30 H 1.07996 * 125.20746 * 180.02562 * 15 14 13 31 31 H 1.08999 * 109.46792 * 194.51245 * 17 10 9 32 32 H 1.08995 * 109.46665 * 314.51261 * 17 10 9 33 33 H 1.08007 * 122.53879 * 359.95462 * 19 18 17 34 34 H 1.07996 * 122.53830 * 180.02562 * 20 19 18 35 35 H 1.07995 * 125.19851 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.9709 -3.6541 1.2528 12 6 4.1861 -4.5269 1.0728 13 6 5.3506 -4.1274 0.5593 14 6 6.3257 -5.1076 0.4927 15 6 5.9533 -6.3031 0.9526 16 16 4.2884 -6.2262 1.5146 17 6 1.5211 -4.8936 -0.2387 18 6 1.1358 -4.9937 -1.6922 19 6 1.9350 -5.4188 -2.6720 20 6 1.3609 -5.4251 -3.9316 21 6 0.0958 -5.0045 -3.9747 22 16 -0.4387 -4.5752 -2.3550 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 0.8897 25 1 0.6240 -2.5567 -0.8903 26 1 3.2847 -2.6445 1.5179 27 1 2.3459 -4.0609 2.0478 28 1 5.5197 -3.1159 0.2208 29 1 7.3135 -4.9186 0.0991 30 1 6.5795 -7.1825 0.9795 31 1 2.1882 -5.7164 0.0179 32 1 0.6247 -4.9462 0.3792 33 1 2.9529 -5.7340 -2.4959 34 1 1.8968 -5.7461 -4.8126 35 1 -0.5094 -4.9423 -4.8670 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071115068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:35 Heat of formation + Delta-G solvation = 74.608633 kcal Electronic energy + Delta-G solvation = -18581.196683 eV Core-core repulsion = 15797.804070 eV Total energy + Delta-G solvation = -2783.392613 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.15936 -37.35172 -36.09741 -32.64844 -30.93986 -29.51268 -27.04934 -25.86834 -24.26761 -22.62942 -22.56266 -20.55831 -18.93837 -18.53577 -16.86461 -16.73861 -16.29741 -15.31664 -15.10795 -14.70315 -14.37669 -13.79463 -13.59874 -12.84593 -12.52457 -12.38061 -12.35252 -12.20169 -12.11041 -11.90498 -11.64236 -11.36396 -11.10379 -10.90767 -10.68346 -10.59727 -10.33063 -10.22211 -9.94915 -9.26333 -8.49678 -8.40597 -8.22439 -8.14135 -7.93106 -7.37507 -6.04738 -4.06077 1.26715 1.47973 1.88795 2.12884 2.25254 2.50158 3.05942 3.21548 3.29593 3.37498 3.41502 4.41157 4.99768 5.17638 5.27083 5.31324 5.33863 5.42042 5.62882 5.77837 5.85826 5.88767 5.92910 6.00010 6.06464 6.40676 6.44707 6.56512 6.68012 6.75780 6.82038 6.94816 7.20054 7.24866 7.74881 8.00666 8.10390 8.45820 9.00565 9.57858 11.05951 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.009693 B = 0.007287 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.000639 B = 3841.368909 C = 5979.332747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.188 3.812 10 N -0.522 5.522 11 C 0.127 3.873 12 C -0.139 4.139 13 C -0.132 4.132 14 C -0.126 4.126 15 C -0.227 4.227 16 S 0.064 5.936 17 C 0.116 3.884 18 C -0.140 4.140 19 C -0.136 4.136 20 C -0.133 4.133 21 C -0.231 4.231 22 S 0.108 5.892 23 H 0.261 0.739 24 H -0.009 1.009 25 H 0.044 0.956 26 H 0.110 0.890 27 H 0.033 0.967 28 H 0.142 0.858 29 H 0.134 0.866 30 H 0.157 0.843 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.854 -12.925 -1.268 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.063 3.937 10 N -0.246 5.246 11 C -0.003 4.003 12 C -0.256 4.256 13 C -0.162 4.162 14 C -0.157 4.157 15 C -0.362 4.362 16 S 0.326 5.674 17 C -0.015 4.015 18 C -0.258 4.258 19 C -0.166 4.166 20 C -0.165 4.165 21 C -0.366 4.366 22 S 0.371 5.629 23 H 0.071 0.929 24 H 0.009 0.991 25 H 0.062 0.938 26 H 0.128 0.872 27 H 0.051 0.949 28 H 0.160 0.840 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.668 -13.218 -0.401 13.724 hybrid contribution 2.167 1.337 -0.800 2.669 sum 5.836 -11.882 -1.201 13.292 Atomic orbital electron populations 1.69964 1.06011 1.26680 1.50735 1.24960 0.94831 0.99205 0.95377 0.86490 0.80130 0.83586 0.77523 1.19637 1.21020 1.21112 1.21148 0.93481 0.89766 1.50296 0.91756 1.19907 0.90046 0.86993 0.96743 1.62125 1.27829 1.02314 1.32356 1.20571 0.89722 0.98929 0.91092 1.24717 1.00094 0.95697 1.05124 1.20148 0.92355 1.01397 1.02341 1.20189 1.00715 0.92515 1.02329 1.25438 0.98857 1.02036 1.09895 1.84153 1.10449 1.09286 1.63547 1.20612 0.97201 0.94537 0.89108 1.24355 0.96492 1.05105 0.99814 1.19952 1.00659 1.04461 0.91543 1.20062 0.94790 1.03463 0.98165 1.25527 1.00526 1.09765 1.00825 1.84454 1.14023 1.64627 0.99777 0.92946 0.99104 0.93820 0.87165 0.94906 0.84009 0.84791 0.82577 0.90063 0.94598 0.84869 0.85076 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -13.85 8.27 -34.44 -0.28 -14.14 16 8 H 0.06 1.73 7.27 -52.48 -0.38 1.35 16 9 C 0.19 4.74 4.55 -4.98 -0.02 4.72 16 10 N -0.52 -10.94 4.37 -238.96 -1.04 -11.98 16 11 C 0.13 2.38 5.30 -4.98 -0.03 2.36 16 12 C -0.14 -2.26 5.36 -36.01 -0.19 -2.46 16 13 C -0.13 -2.06 10.05 -41.21 -0.41 -2.48 16 14 C -0.13 -1.66 10.18 -41.21 -0.42 -2.08 16 15 C -0.23 -2.81 11.23 29.04 0.33 -2.48 16 16 S 0.06 0.87 22.03 -107.50 -2.37 -1.50 16 17 C 0.12 2.13 5.32 -4.97 -0.03 2.11 16 18 C -0.14 -2.54 5.41 -36.00 -0.19 -2.74 16 19 C -0.14 -2.27 10.05 -41.21 -0.41 -2.68 16 20 C -0.13 -2.01 10.18 -41.21 -0.42 -2.43 16 21 C -0.23 -3.50 11.23 29.04 0.33 -3.17 16 22 S 0.11 1.89 22.27 -107.50 -2.39 -0.51 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 25 H 0.04 1.18 6.41 -51.93 -0.33 0.85 16 26 H 0.11 2.25 6.59 -51.93 -0.34 1.90 16 27 H 0.03 0.59 8.05 -51.93 -0.42 0.18 16 28 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.08 1.36 5.98 -51.93 -0.31 1.05 16 32 H 0.04 0.67 8.02 -51.93 -0.42 0.25 16 33 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 322.50 15.07 4.86 4.86 Total: -1.00 -29.31 322.50 -11.39 -40.70 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.30 Total: 1.44 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -1.86 Total: -23.96 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.31 Total: -37.38 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -4.76 Total: -2.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.31 -11.39 -40.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071115068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.305 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds