Wall clock time and date at job start Tue Mar 31 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48510 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47040 * 299.99952 * 3 2 1 6 6 H 1.48495 * 109.47142 * 60.00347 * 3 2 1 7 7 C 1.37880 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00418 * 179.72589 * 7 2 1 9 9 C 1.50701 * 119.99890 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47293 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00148 * 66.04759 * 10 9 7 12 12 C 1.50695 * 109.47234 * 196.30730 * 11 10 9 13 13 C 1.33388 * 125.20537 * 84.51768 * 12 11 10 14 14 C 1.38425 * 114.92464 * 179.97438 * 13 12 11 15 15 C 1.33389 * 114.91965 * 359.97438 * 14 13 12 16 16 S 1.75881 * 125.20220 * 264.21076 * 12 11 10 17 17 C 1.46904 * 111.00044 * 190.00167 * 10 9 7 18 18 C 1.50701 * 109.46873 * 74.51164 * 17 10 9 19 19 C 1.33390 * 125.20136 * 84.41511 * 18 17 10 20 20 C 1.38427 * 114.92068 * 179.97438 * 19 18 17 21 21 C 1.33388 * 114.91810 * 0.02562 * 20 19 18 22 22 S 1.75884 * 125.20293 * 264.10432 * 18 17 10 23 23 H 0.97003 * 120.00035 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46995 * 300.00437 * 9 7 2 25 25 H 1.09002 * 109.47144 * 60.00028 * 9 7 2 26 26 H 1.09002 * 109.47031 * 316.30679 * 11 10 9 27 27 H 1.08999 * 109.47307 * 76.30327 * 11 10 9 28 28 H 1.07997 * 122.54023 * 359.94874 * 13 12 11 29 29 H 1.08000 * 122.54370 * 180.02562 * 14 13 12 30 30 H 1.07996 * 125.20746 * 180.02562 * 15 14 13 31 31 H 1.08999 * 109.46792 * 194.51245 * 17 10 9 32 32 H 1.08995 * 109.46665 * 314.51261 * 17 10 9 33 33 H 1.08007 * 122.53879 * 359.95462 * 19 18 17 34 34 H 1.07996 * 122.53830 * 180.02562 * 20 19 18 35 35 H 1.07995 * 125.19851 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.9709 -3.6541 1.2528 12 6 4.1861 -4.5269 1.0728 13 6 5.3506 -4.1274 0.5593 14 6 6.3257 -5.1076 0.4927 15 6 5.9533 -6.3031 0.9526 16 16 4.2884 -6.2262 1.5146 17 6 1.5211 -4.8936 -0.2387 18 6 1.1358 -4.9937 -1.6922 19 6 1.9350 -5.4188 -2.6720 20 6 1.3609 -5.4251 -3.9316 21 6 0.0958 -5.0045 -3.9747 22 16 -0.4387 -4.5752 -2.3550 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 0.8897 25 1 0.6240 -2.5567 -0.8903 26 1 3.2847 -2.6445 1.5179 27 1 2.3459 -4.0609 2.0478 28 1 5.5197 -3.1159 0.2208 29 1 7.3135 -4.9186 0.0991 30 1 6.5795 -7.1825 0.9795 31 1 2.1882 -5.7164 0.0179 32 1 0.6247 -4.9462 0.3792 33 1 2.9529 -5.7340 -2.4959 34 1 1.8968 -5.7461 -4.8126 35 1 -0.5094 -4.9423 -4.8670 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071115068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:34 Heat of formation + Delta-G solvation = 58.811857 kcal Electronic energy + Delta-G solvation = -18581.881682 eV Core-core repulsion = 15797.804070 eV Total energy + Delta-G solvation = -2784.077613 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.57041 -38.55101 -37.54360 -34.73008 -32.24513 -31.04721 -28.81284 -27.17396 -25.86934 -24.21637 -23.81122 -22.15848 -20.12749 -19.81815 -18.55239 -18.13558 -17.84451 -16.85883 -16.44040 -16.27511 -15.89706 -15.39989 -15.09528 -14.17195 -14.09021 -13.84789 -13.68966 -13.50370 -13.39948 -13.30465 -13.15396 -12.88703 -12.69635 -12.61994 -12.42943 -12.14858 -11.85375 -11.59314 -11.53519 -11.28409 -10.61810 -9.63493 -9.44418 -9.32208 -9.28587 -9.08632 -8.18955 -6.27870 0.10590 0.22271 0.76072 0.82052 1.15822 1.21955 1.39774 1.40971 1.53560 1.90805 1.98356 2.40433 3.14145 3.41041 3.87619 3.95217 4.15251 4.27962 4.31873 4.41831 4.48098 4.69304 4.77182 4.78959 4.82103 4.85091 5.14049 5.25541 5.29667 5.34120 5.48430 5.53906 5.64419 5.69262 5.70162 6.04222 6.24693 6.52561 6.86674 7.40718 8.92193 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.009693 B = 0.007287 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.000639 B = 3841.368909 C = 5979.332747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.205 3.795 10 N -0.524 5.524 11 C 0.132 3.868 12 C -0.172 4.172 13 C -0.132 4.132 14 C -0.137 4.137 15 C -0.206 4.206 16 S 0.080 5.920 17 C 0.121 3.879 18 C -0.168 4.168 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.215 4.215 22 S 0.052 5.948 23 H 0.263 0.737 24 H -0.042 1.042 25 H 0.024 0.976 26 H 0.085 0.915 27 H 0.032 0.968 28 H 0.130 0.870 29 H 0.162 0.838 30 H 0.192 0.808 31 H 0.100 0.900 32 H 0.024 0.976 33 H 0.145 0.855 34 H 0.168 0.832 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.297 -14.231 -2.489 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.248 5.248 11 C 0.003 3.997 12 C -0.290 4.290 13 C -0.163 4.163 14 C -0.167 4.167 15 C -0.341 4.341 16 S 0.342 5.658 17 C -0.009 4.009 18 C -0.285 4.285 19 C -0.160 4.160 20 C -0.167 4.167 21 C -0.350 4.350 22 S 0.315 5.685 23 H 0.072 0.928 24 H -0.024 1.024 25 H 0.042 0.958 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.148 0.852 29 H 0.179 0.821 30 H 0.209 0.791 31 H 0.118 0.882 32 H 0.043 0.957 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.126 -14.545 -1.615 15.865 hybrid contribution 1.454 1.630 -0.440 2.229 sum 7.580 -12.914 -2.056 15.115 Atomic orbital electron populations 1.70092 1.07605 1.27666 1.51750 1.25823 0.95648 1.02852 0.94938 0.85429 0.79142 0.79037 0.77615 1.18662 1.20657 1.20464 1.21438 0.93541 0.90891 1.49893 0.91884 1.19519 0.90060 0.88352 0.94199 1.62069 1.26829 1.02325 1.33599 1.20372 0.90696 0.98516 0.90164 1.24388 0.99285 0.97472 1.07833 1.20304 0.92820 1.01651 1.01524 1.20355 1.01354 0.92016 1.02977 1.25893 0.97923 1.02884 1.07417 1.84083 1.11894 1.06578 1.63276 1.20589 0.96881 0.93677 0.89747 1.24358 0.96973 1.07319 0.99890 1.20255 1.00860 1.02943 0.91929 1.20414 0.94791 1.02873 0.98594 1.25883 1.00876 1.08378 0.99904 1.84638 1.15084 1.65956 1.02771 0.92789 1.02414 0.95784 0.89656 0.95031 0.85202 0.82082 0.79054 0.88209 0.95737 0.83752 0.81500 0.79557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 2 C 0.01 0.32 5.46 84.66 0.46 0.79 16 3 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.52 -29.30 8.27 25.60 0.21 -29.09 16 8 H 0.06 3.49 7.27 -2.91 -0.02 3.47 16 9 C 0.20 10.92 4.55 85.56 0.39 11.31 16 10 N -0.52 -22.85 4.37 -909.94 -3.97 -26.83 16 11 C 0.13 5.18 5.30 85.56 0.45 5.64 16 12 C -0.17 -5.59 5.36 24.59 0.13 -5.46 16 13 C -0.13 -3.98 10.05 21.22 0.21 -3.77 16 14 C -0.14 -3.19 10.18 21.22 0.22 -2.97 16 15 C -0.21 -4.32 11.23 66.72 0.75 -3.57 16 16 S 0.08 2.03 22.03 -56.49 -1.24 0.79 16 17 C 0.12 4.59 5.32 85.56 0.45 5.05 16 18 C -0.17 -6.16 5.41 24.59 0.13 -6.03 16 19 C -0.13 -4.12 10.05 21.22 0.21 -3.91 16 20 C -0.14 -3.75 10.18 21.22 0.22 -3.54 16 21 C -0.21 -6.13 11.23 66.72 0.75 -5.38 16 22 S 0.05 1.88 22.27 -56.49 -1.26 0.63 16 23 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 24 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 25 H 0.02 1.38 6.41 -2.39 -0.02 1.36 16 26 H 0.09 3.70 6.59 -2.39 -0.02 3.68 16 27 H 0.03 1.21 8.05 -2.39 -0.02 1.19 16 28 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 29 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.10 3.35 5.98 -2.39 -0.01 3.34 16 32 H 0.02 0.97 8.02 -2.39 -0.02 0.95 16 33 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -65.07 322.50 1.51 -63.55 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.09 Total: 12.13 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 4.59 Total: -40.94 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -3.69 Total: -82.64 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -2.50 Total: 1.41 kcal Total: -65.07 1.51 -63.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071115068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.366 kcal (2) G-P(sol) polarization free energy of solvation -65.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds