Wall clock time and date at job start Tue Mar 31 2020 07:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47011 * 61.71497 * 3 2 1 5 5 N 1.46505 * 109.46734 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00119 * 274.96711 * 5 4 3 7 7 C 1.50701 * 109.46725 * 269.99974 * 6 5 4 8 8 H 1.07997 * 120.00391 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00005 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99715 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00167 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47108 * 90.00015 * 11 9 7 13 13 H 1.48504 * 109.47093 * 210.00146 * 11 9 7 14 14 H 1.48499 * 109.47193 * 329.99972 * 11 9 7 15 15 C 1.34780 * 119.99757 * 94.96644 * 5 4 3 16 16 O 1.21525 * 119.99955 * 185.52350 * 15 5 4 17 17 C 1.48068 * 119.99867 * 5.51938 * 15 5 4 18 18 C 1.39865 * 120.93369 * 54.99348 * 17 15 5 19 19 C 1.38084 * 119.02392 * 180.02562 * 18 17 15 20 20 N 1.31841 * 120.93650 * 359.97438 * 19 18 17 21 21 C 1.31762 * 122.07797 * 359.70124 * 20 19 18 22 22 C 1.38360 * 120.86181 * 0.58958 * 21 20 19 23 23 Cl 1.73604 * 120.51449 * 179.69877 * 22 21 20 24 24 H 1.09005 * 109.46787 * 301.71804 * 3 2 1 25 25 H 1.08998 * 109.47010 * 181.72025 * 3 2 1 26 26 H 1.09005 * 109.47094 * 60.00496 * 4 3 2 27 27 H 1.08995 * 109.47206 * 299.99921 * 4 3 2 28 28 H 1.08997 * 109.47063 * 29.99785 * 6 5 4 29 29 H 1.08999 * 109.47174 * 150.00130 * 6 5 4 30 30 H 0.97004 * 119.99524 * 180.02562 * 10 9 7 31 31 H 1.08001 * 120.48771 * 359.97438 * 18 17 15 32 32 H 1.08004 * 119.53166 * 179.97438 * 19 18 17 33 33 H 1.07992 * 119.56918 * 180.31462 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1184 -0.6826 -1.2702 5 7 4.5834 -0.6814 -1.2705 6 6 5.3149 0.4842 -1.7730 7 6 5.5659 0.3212 -3.2499 8 1 5.2153 -0.5621 -3.7631 9 6 6.2423 1.3002 -3.9465 10 7 6.6689 2.3760 -3.3217 11 14 6.5541 1.0979 -5.7771 12 1 5.4234 1.6852 -6.5397 13 1 7.8135 1.7937 -6.1446 14 1 6.6735 -0.3462 -6.1022 15 6 5.2582 -1.7527 -0.8084 16 8 6.4692 -1.7138 -0.7146 17 6 4.5240 -2.9769 -0.4149 18 6 3.6546 -3.6120 -1.3077 19 6 2.9896 -4.7511 -0.8992 20 7 3.1653 -5.2409 0.3122 21 6 3.9789 -4.6789 1.1830 22 6 4.6809 -3.5311 0.8602 23 17 5.7447 -2.7938 2.0173 24 1 2.9716 -0.5395 0.8742 25 1 2.9709 1.0280 0.0308 26 1 2.7548 -0.1425 -2.1445 27 1 2.7555 -1.7100 -1.3010 28 1 4.7251 1.3847 -1.6019 29 1 6.2673 0.5688 -1.2497 30 1 7.1444 3.0650 -3.8118 31 1 3.5050 -3.2168 -2.3016 32 1 2.3160 -5.2479 -1.5818 33 1 4.0960 -5.1174 2.1629 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073846835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:14 Heat of formation + Delta-G solvation = 27.638971 kcal Electronic energy + Delta-G solvation = -20714.557852 eV Core-core repulsion = 17380.791561 eV Total energy + Delta-G solvation = -3333.766291 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71244 -38.88167 -36.93931 -36.64100 -35.38695 -33.21724 -32.45856 -31.25086 -30.95095 -27.62676 -25.04072 -24.16660 -23.60277 -22.60135 -19.53646 -17.84292 -17.18843 -16.90929 -16.51856 -16.44964 -15.96936 -15.17171 -14.78571 -14.49233 -14.34891 -14.16996 -13.96859 -13.61930 -13.01393 -12.60096 -12.46671 -12.36222 -12.10920 -12.08787 -11.82423 -11.37440 -11.21782 -11.07128 -10.97808 -10.73117 -10.30611 -10.09514 -9.84057 -9.80698 -9.21131 -9.11940 -8.55468 -8.01383 -6.17413 -4.23108 0.64797 0.74253 1.94120 2.66711 2.78692 3.02341 3.22970 3.30819 3.32228 3.39096 3.53003 4.01660 4.18252 4.33122 4.57428 4.59455 4.66668 4.95682 5.00988 5.07979 5.18057 5.37906 5.38852 5.48590 5.72787 5.74889 5.96898 6.22059 6.77660 7.20346 7.29164 7.54229 7.58337 7.77351 8.01957 8.05936 8.59028 8.81943 9.42830 10.90666 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.005543 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.861220 B = 5050.307729 C = 5698.370939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.217 3.783 3 C -0.049 4.049 4 C 0.107 3.893 5 N -0.584 5.584 6 C 0.245 3.755 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.550 3.450 16 O -0.503 6.503 17 C -0.061 4.061 18 C -0.135 4.135 19 C 0.099 3.901 20 N -0.465 5.465 21 C 0.111 3.889 22 C -0.059 4.059 23 Cl -0.033 7.033 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.265 0.735 31 H 0.154 0.846 32 H 0.167 0.833 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.701 -10.236 7.657 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.101 4.101 3 C -0.091 4.091 4 C -0.019 4.019 5 N -0.315 5.315 6 C 0.126 3.874 7 C -0.573 4.573 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.529 5.529 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.334 3.666 16 O -0.377 6.377 17 C -0.073 4.073 18 C -0.155 4.155 19 C -0.057 4.057 20 N -0.174 5.174 21 C -0.047 4.047 22 C -0.089 4.089 23 Cl -0.004 7.004 24 H 0.122 0.878 25 H 0.138 0.862 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.171 0.829 32 H 0.184 0.816 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.966 -10.670 8.002 15.535 hybrid contribution 1.166 0.832 -1.243 1.897 sum -6.800 -9.838 6.759 13.737 Atomic orbital electron populations 1.81206 1.12923 1.09178 1.08666 1.29044 0.95035 0.92915 0.93116 1.19831 0.81516 1.05946 1.01778 1.21556 0.82017 1.01560 0.96780 1.48143 1.05060 1.17951 1.60380 1.19448 0.92814 0.80637 0.94453 1.21377 1.37306 1.05291 0.93296 0.92286 1.24911 0.95131 0.95041 0.98745 1.69918 1.37967 1.08683 1.36327 0.86503 0.77811 0.78351 0.84819 1.20559 1.21032 1.19858 1.17893 0.87260 0.82553 0.78856 1.90832 1.12822 1.81419 1.52670 1.20709 0.96152 0.97549 0.92932 1.22441 0.95434 0.96555 1.01085 1.22838 0.97334 0.92797 0.92777 1.67677 1.15653 1.30985 1.03079 1.22772 0.91601 0.90685 0.99666 1.22185 0.97530 0.97217 0.91934 1.98419 1.63250 1.81683 1.57089 0.87750 0.86242 0.88416 0.90204 0.94307 0.93131 0.92528 0.82884 0.81564 0.81477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.56 18.54 42.16 0.78 -5.78 16 2 C 0.22 2.69 15.43 -20.76 -0.32 2.37 16 3 C -0.05 -0.54 6.02 -29.52 -0.18 -0.72 16 4 C 0.11 1.40 5.22 -4.04 -0.02 1.38 16 5 N -0.58 -10.34 2.46 -176.09 -0.43 -10.78 16 6 C 0.24 5.55 5.23 -5.19 -0.03 5.52 16 7 C -0.53 -13.62 9.39 -34.44 -0.32 -13.94 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 11 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.55 10.06 6.64 -12.23 -0.08 9.98 16 16 O -0.50 -11.37 15.89 5.34 0.08 -11.29 16 17 C -0.06 -0.88 4.92 -104.62 -0.52 -1.39 16 18 C -0.13 -1.57 7.62 -39.03 -0.30 -1.87 16 19 C 0.10 1.01 11.17 -17.60 -0.20 0.81 16 20 N -0.46 -5.34 10.33 -13.27 -0.14 -5.48 16 21 C 0.11 1.24 10.99 -17.54 -0.19 1.04 16 22 C -0.06 -0.77 6.38 -38.90 -0.25 -1.02 16 23 Cl -0.03 -0.45 27.61 -51.86 -1.43 -1.88 16 24 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 27 H 0.08 0.90 4.44 -51.93 -0.23 0.67 16 28 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.15 1.61 7.61 -52.49 -0.40 1.21 16 32 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 317.54 15.07 4.79 4.79 Total: -1.00 -31.56 317.54 -6.22 -37.78 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -3.09 Total: -2.71 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -2.50 Total: 3.78 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.95 Total: -45.97 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.43 Total: -1.88 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.56 -6.22 -37.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073846835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.416 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds