Wall clock time and date at job start Tue Mar 31 2020 07:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47011 * 61.71497 * 3 2 1 5 5 N 1.46505 * 109.46734 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00119 * 274.96711 * 5 4 3 7 7 C 1.50701 * 109.46725 * 269.99974 * 6 5 4 8 8 H 1.07997 * 120.00391 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00005 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99715 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00167 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47108 * 90.00015 * 11 9 7 13 13 H 1.48504 * 109.47093 * 210.00146 * 11 9 7 14 14 H 1.48499 * 109.47193 * 329.99972 * 11 9 7 15 15 C 1.34780 * 119.99757 * 94.96644 * 5 4 3 16 16 O 1.21525 * 119.99955 * 185.52350 * 15 5 4 17 17 C 1.48068 * 119.99867 * 5.51938 * 15 5 4 18 18 C 1.39865 * 120.93369 * 54.99348 * 17 15 5 19 19 C 1.38084 * 119.02392 * 180.02562 * 18 17 15 20 20 N 1.31841 * 120.93650 * 359.97438 * 19 18 17 21 21 C 1.31762 * 122.07797 * 359.70124 * 20 19 18 22 22 C 1.38360 * 120.86181 * 0.58958 * 21 20 19 23 23 Cl 1.73604 * 120.51449 * 179.69877 * 22 21 20 24 24 H 1.09005 * 109.46787 * 301.71804 * 3 2 1 25 25 H 1.08998 * 109.47010 * 181.72025 * 3 2 1 26 26 H 1.09005 * 109.47094 * 60.00496 * 4 3 2 27 27 H 1.08995 * 109.47206 * 299.99921 * 4 3 2 28 28 H 1.08997 * 109.47063 * 29.99785 * 6 5 4 29 29 H 1.08999 * 109.47174 * 150.00130 * 6 5 4 30 30 H 0.97004 * 119.99524 * 180.02562 * 10 9 7 31 31 H 1.08001 * 120.48771 * 359.97438 * 18 17 15 32 32 H 1.08004 * 119.53166 * 179.97438 * 19 18 17 33 33 H 1.07992 * 119.56918 * 180.31462 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1184 -0.6826 -1.2702 5 7 4.5834 -0.6814 -1.2705 6 6 5.3149 0.4842 -1.7730 7 6 5.5659 0.3212 -3.2499 8 1 5.2153 -0.5621 -3.7631 9 6 6.2423 1.3002 -3.9465 10 7 6.6689 2.3760 -3.3217 11 14 6.5541 1.0979 -5.7771 12 1 5.4234 1.6852 -6.5397 13 1 7.8135 1.7937 -6.1446 14 1 6.6735 -0.3462 -6.1022 15 6 5.2582 -1.7527 -0.8084 16 8 6.4692 -1.7138 -0.7146 17 6 4.5240 -2.9769 -0.4149 18 6 3.6546 -3.6120 -1.3077 19 6 2.9896 -4.7511 -0.8992 20 7 3.1653 -5.2409 0.3122 21 6 3.9789 -4.6789 1.1830 22 6 4.6809 -3.5311 0.8602 23 17 5.7447 -2.7938 2.0173 24 1 2.9716 -0.5395 0.8742 25 1 2.9709 1.0280 0.0308 26 1 2.7548 -0.1425 -2.1445 27 1 2.7555 -1.7100 -1.3010 28 1 4.7251 1.3847 -1.6019 29 1 6.2673 0.5688 -1.2497 30 1 7.1444 3.0650 -3.8118 31 1 3.5050 -3.2168 -2.3016 32 1 2.3160 -5.2479 -1.5818 33 1 4.0960 -5.1174 2.1629 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073846835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:14 Heat of formation + Delta-G solvation = 8.372349 kcal Electronic energy + Delta-G solvation = -20715.393316 eV Core-core repulsion = 17380.791561 eV Total energy + Delta-G solvation = -3334.601755 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.79397 -40.15092 -38.09139 -37.65503 -36.78610 -34.95465 -33.67057 -32.25078 -32.15058 -29.35468 -26.30495 -25.51348 -24.55737 -24.05040 -20.82010 -19.01614 -18.51761 -18.26157 -17.88610 -17.56893 -17.21042 -16.53248 -16.06147 -15.74744 -15.52248 -15.30193 -15.04240 -14.80890 -14.34910 -14.20136 -13.68764 -13.63064 -13.27057 -13.17411 -13.07901 -12.97239 -12.74690 -12.52312 -12.23192 -12.19210 -12.00613 -11.69678 -11.29211 -10.85753 -10.57297 -10.46396 -10.03303 -9.58578 -8.18143 -6.30461 -0.36326 -0.14969 0.95512 1.41970 1.44510 1.53077 1.53941 1.76889 1.77579 2.08699 2.43569 2.56181 2.94663 3.14745 3.38463 3.44933 3.63486 3.74637 3.95453 4.03734 4.11794 4.42958 4.49632 4.59524 4.73449 4.84131 4.94360 5.06711 5.32512 5.38504 5.54598 5.82387 6.09893 6.51553 6.55954 6.71181 6.78121 7.18022 7.41120 8.89021 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.005543 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.861220 B = 5050.307729 C = 5698.370939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.244 3.756 3 C -0.039 4.039 4 C 0.105 3.895 5 N -0.583 5.583 6 C 0.260 3.740 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.013 3.987 10 N -0.925 5.925 11 Si 0.958 3.042 12 H -0.267 1.267 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.550 3.450 16 O -0.557 6.557 17 C -0.077 4.077 18 C -0.134 4.134 19 C 0.113 3.887 20 N -0.471 5.471 21 C 0.121 3.879 22 C -0.068 4.068 23 Cl -0.046 7.046 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.040 0.960 29 H 0.008 0.992 30 H 0.265 0.735 31 H 0.165 0.835 32 H 0.205 0.795 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 -12.018 7.152 16.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.157 5.157 2 C -0.073 4.073 3 C -0.080 4.080 4 C -0.020 4.020 5 N -0.313 5.313 6 C 0.139 3.861 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.784 3.216 12 H -0.192 1.192 13 H -0.213 1.213 14 H -0.196 1.196 15 C 0.337 3.663 16 O -0.436 6.436 17 C -0.089 4.089 18 C -0.154 4.154 19 C -0.043 4.043 20 N -0.180 5.180 21 C -0.037 4.037 22 C -0.097 4.097 23 Cl -0.017 7.017 24 H 0.139 0.861 25 H 0.142 0.858 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.058 0.942 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.221 0.779 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -9.762 -12.469 7.505 17.524 hybrid contribution 1.684 1.323 -1.060 2.389 sum -8.078 -11.146 6.445 15.200 Atomic orbital electron populations 1.81244 1.14003 1.10529 1.09937 1.28997 0.94778 0.91672 0.91897 1.19756 0.80625 1.06302 1.01351 1.21757 0.79054 1.03389 0.97759 1.47978 1.06812 1.16631 1.59873 1.18916 0.91648 0.82623 0.92878 1.21727 1.36696 1.04960 0.94644 0.92228 1.25713 0.95136 0.94910 1.02873 1.70029 1.39004 1.09522 1.37885 0.85552 0.77776 0.78215 0.80106 1.19196 1.21321 1.19624 1.18437 0.86827 0.83469 0.77600 1.90797 1.15342 1.82563 1.54856 1.20398 0.97621 0.96505 0.94384 1.22612 0.94791 0.96919 1.01064 1.23409 0.96505 0.91691 0.92686 1.67809 1.15618 1.30984 1.03606 1.23146 0.90406 0.89514 1.00618 1.22293 0.98029 0.97986 0.91429 1.98416 1.63824 1.82018 1.57429 0.86139 0.85771 0.88508 0.87799 0.94215 0.97351 0.92557 0.81708 0.77859 0.78968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.44 18.54 20.01 0.37 -13.07 16 2 C 0.24 5.59 15.43 89.44 1.38 6.97 16 3 C -0.04 -0.80 6.02 28.79 0.17 -0.63 16 4 C 0.10 2.58 5.22 86.38 0.45 3.03 16 5 N -0.58 -20.60 2.46 -829.32 -2.04 -22.63 16 6 C 0.26 12.08 5.23 85.63 0.45 12.53 16 7 C -0.54 -27.88 9.39 25.60 0.24 -27.64 16 8 H 0.06 2.99 7.81 -2.91 -0.02 2.96 16 9 C 0.01 0.70 5.46 84.66 0.46 1.17 16 10 N -0.92 -52.21 13.29 21.45 0.28 -51.92 16 11 Si 0.96 42.05 29.54 68.60 2.03 44.08 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 13 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 C 0.55 20.18 6.64 86.85 0.58 20.76 16 16 O -0.56 -26.09 15.89 -3.79 -0.06 -26.15 16 17 C -0.08 -2.10 4.92 -19.87 -0.10 -2.20 16 18 C -0.13 -2.73 7.62 22.63 0.17 -2.55 16 19 C 0.11 1.86 11.17 84.65 0.95 2.80 16 20 N -0.47 -9.12 10.33 -195.91 -2.02 -11.14 16 21 C 0.12 2.36 10.99 84.73 0.93 3.29 16 22 C -0.07 -1.66 6.38 22.71 0.14 -1.52 16 23 Cl -0.05 -1.23 27.61 -2.72 -0.08 -1.30 16 24 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 25 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.10 2.45 8.11 -2.38 -0.02 2.43 16 27 H 0.10 2.08 4.44 -2.39 -0.01 2.07 16 28 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 29 H 0.01 0.46 7.35 -2.39 -0.02 0.44 16 30 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.17 2.95 7.61 -2.91 -0.02 2.93 16 32 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -69.76 317.54 5.47 -64.29 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: 1.15 Total: 1.84 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 5.83 Total: 16.02 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -3.41 Total: -98.77 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.06 Total: -26.15 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.30 kcal Total: -69.76 5.47 -64.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073846835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.664 kcal (2) G-P(sol) polarization free energy of solvation -69.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds