Wall clock time and date at job start Tue Mar 31 2020 07:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00194 * 2 1 4 4 H 1.48498 * 109.47063 * 270.00084 * 3 2 1 5 5 H 1.48502 * 109.46899 * 30.00097 * 3 2 1 6 6 H 1.48507 * 109.47213 * 149.99569 * 3 2 1 7 7 C 1.38805 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99806 * 0.02562 * 7 2 1 9 9 S 1.76193 * 119.99931 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00016 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47475 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47262 * 179.97438 * 11 10 9 13 13 S 1.81006 * 109.47053 * 179.97438 * 12 11 10 14 14 C 1.76198 * 100.00095 * 179.97438 * 13 12 11 15 15 N 1.29794 * 126.22960 * 359.97438 * 14 13 12 16 16 C 1.36556 * 113.80864 * 180.02562 * 15 14 13 17 17 C 1.40002 * 131.23919 * 179.97438 * 16 15 14 18 18 C 1.37808 * 120.01788 * 180.02562 * 17 16 15 19 19 C 1.38379 * 120.54301 * 0.02570 * 18 17 16 20 20 C 1.38554 * 119.93252 * 359.95037 * 19 18 17 21 21 C 1.37267 * 119.88732 * 0.05371 * 20 19 18 22 22 C 1.51174 * 133.72135 * 179.97438 * 21 20 19 23 23 H 0.97002 * 119.99752 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47245 * 59.99686 * 10 9 7 25 25 H 1.09006 * 109.47087 * 299.99619 * 10 9 7 26 26 H 1.08998 * 109.47207 * 59.99581 * 11 10 9 27 27 H 1.09006 * 109.47006 * 299.99513 * 11 10 9 28 28 H 1.08998 * 109.47247 * 59.99733 * 12 11 10 29 29 H 1.08993 * 109.47295 * 299.99392 * 12 11 10 30 30 H 1.07997 * 119.99046 * 0.02562 * 17 16 15 31 31 H 1.07996 * 119.73109 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.03405 * 179.97438 * 19 18 17 33 33 H 1.08005 * 120.05601 * 180.02562 * 20 19 18 34 34 H 1.09003 * 110.67019 * 61.58216 * 22 21 20 35 35 H 1.08998 * 110.80757 * 298.52251 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9845 0.0009 11 6 5.5957 -3.2364 0.0021 12 6 5.8613 -4.7431 0.0025 13 16 7.6467 -5.0410 0.0032 14 6 7.6630 -6.8029 0.0043 15 7 6.6231 -7.5796 0.0050 16 6 6.9291 -8.9105 0.0064 17 6 6.1100 -10.0458 0.0080 18 6 6.6742 -11.3031 0.0097 19 6 8.0495 -11.4566 0.0105 20 6 8.8698 -10.3401 0.0084 21 6 8.3157 -9.0842 0.0068 22 6 8.8935 -7.6872 0.0049 23 1 -0.4850 0.8401 -0.0004 24 1 3.6439 -3.4314 -0.8893 25 1 3.6433 -3.4318 0.8907 26 1 6.0379 -2.7896 0.8925 27 1 6.0394 -2.7891 -0.8875 28 1 5.4190 -5.1903 -0.8877 29 1 5.4178 -5.1900 0.8922 30 1 5.0356 -9.9363 0.0079 31 1 6.0380 -12.1757 0.0105 32 1 8.4829 -12.4458 0.0122 33 1 9.9435 -10.4576 0.0086 34 1 9.4890 -7.5184 -0.8923 35 1 9.4911 -7.5142 0.8999 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075076680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:40 Heat of formation + Delta-G solvation = 40.780536 kcal Electronic energy + Delta-G solvation = -16915.823182 eV Core-core repulsion = 14130.963673 eV Total energy + Delta-G solvation = -2784.859509 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13133 -37.05721 -34.52523 -32.45237 -32.05838 -29.79930 -28.58236 -27.19994 -25.64089 -23.64787 -21.84794 -21.59346 -20.77535 -17.51117 -17.14360 -16.53707 -16.23460 -15.69896 -15.36779 -15.23049 -14.97637 -14.33102 -14.11544 -13.85061 -13.34878 -12.89391 -12.85006 -12.69994 -12.43953 -12.02907 -11.87435 -11.80628 -11.38640 -11.21818 -11.07788 -10.70740 -10.69719 -10.23192 -9.88061 -9.79758 -9.29153 -9.17142 -9.02100 -8.60716 -7.72309 -6.97543 -6.29522 -4.02659 0.23733 1.01098 1.13009 1.94498 2.13527 2.98964 3.29243 3.44058 3.55459 3.60314 3.75178 4.10801 4.30138 4.56729 4.61654 4.75079 4.78100 4.96565 4.97164 5.00091 5.08512 5.09403 5.11666 5.31371 5.41707 5.49487 5.63908 5.80385 5.84091 5.99008 6.08405 6.12282 6.17282 6.30765 6.51449 6.52911 7.34564 7.94172 8.43694 9.15941 10.79912 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.036487 B = 0.002478 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.209021 B =11295.503648 C =12031.587980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.503 4.503 8 H 0.089 0.911 9 S -0.212 6.212 10 C -0.078 4.078 11 C -0.090 4.090 12 C -0.101 4.101 13 S -0.008 6.008 14 C 0.128 3.872 15 N -0.477 5.477 16 C 0.076 3.924 17 C -0.084 4.084 18 C -0.111 4.111 19 C -0.121 4.121 20 C -0.089 4.089 21 C -0.142 4.142 22 C -0.083 4.083 23 H 0.271 0.729 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.176 -19.922 0.096 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.650 4.650 8 H 0.107 0.893 9 S 0.016 5.984 10 C -0.229 4.229 11 C -0.130 4.130 12 C -0.251 4.251 13 S 0.230 5.770 14 C -0.160 4.160 15 N -0.192 5.192 16 C -0.031 4.031 17 C -0.104 4.104 18 C -0.130 4.130 19 C -0.139 4.139 20 C -0.107 4.107 21 C -0.146 4.146 22 C -0.124 4.124 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 20.619 -18.032 0.099 27.392 hybrid contribution -1.094 -1.522 -0.035 1.875 sum 19.525 -19.554 0.064 27.634 Atomic orbital electron populations 1.69937 1.05925 1.27738 1.48151 1.24802 0.94523 0.99034 0.93333 0.86669 0.81740 0.83203 0.79724 1.19338 1.20077 1.16142 1.22110 0.86927 0.97477 1.58523 0.89323 1.84145 1.11900 1.04789 1.97562 1.23021 0.96020 0.99586 1.04227 1.21169 0.96549 0.91313 1.03993 1.23753 0.92531 1.01398 1.07440 1.85775 1.11752 0.90522 1.88906 1.27501 0.93724 0.99868 0.94937 1.69476 1.32067 1.01455 1.16227 1.19582 0.92312 0.90747 1.00449 1.20659 0.99864 0.90035 0.99822 1.20987 0.95232 0.96706 1.00027 1.21195 0.93578 0.98388 1.00773 1.20179 0.99940 0.90359 1.00231 1.21138 0.95603 0.94720 1.03146 1.20797 0.97249 0.89253 1.05118 0.91941 0.91045 0.91009 0.90363 0.90372 0.88469 0.88458 0.85335 0.85224 0.85350 0.85766 0.86144 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.73 13.97 55.49 0.78 -25.96 16 2 C 0.09 2.67 5.50 -17.43 -0.10 2.57 16 3 Si 0.86 21.43 27.74 -169.99 -4.72 16.72 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.76 6.74 56.52 0.38 -5.38 16 7 C -0.50 -14.54 10.04 30.94 0.31 -14.23 16 8 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 9 S -0.21 -5.09 19.41 -107.50 -2.09 -7.17 16 10 C -0.08 -1.48 5.67 37.16 0.21 -1.27 16 11 C -0.09 -1.33 5.22 -26.73 -0.14 -1.46 16 12 C -0.10 -1.30 5.22 37.16 0.19 -1.11 16 13 S -0.01 -0.09 22.31 -107.50 -2.40 -2.49 16 14 C 0.13 1.50 7.59 -12.73 -0.10 1.40 16 15 N -0.48 -6.58 10.34 -7.00 -0.07 -6.65 16 16 C 0.08 0.96 7.09 -84.54 -0.60 0.36 16 17 C -0.08 -0.91 10.10 -39.08 -0.39 -1.30 16 18 C -0.11 -0.93 10.00 -39.69 -0.40 -1.33 16 19 C -0.12 -0.91 10.07 -39.41 -0.40 -1.31 16 20 C -0.09 -0.73 10.03 -39.82 -0.40 -1.13 16 21 C -0.14 -1.48 6.42 -104.18 -0.67 -2.15 16 22 C -0.08 -0.75 6.94 -28.39 -0.20 -0.94 16 23 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 25 H 0.07 1.37 8.14 -51.91 -0.42 0.95 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.10 1.29 8.14 -51.92 -0.42 0.87 16 29 H 0.10 1.30 8.14 -51.92 -0.42 0.87 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 33 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -32.28 328.33 -10.87 -43.15 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.65 Total: -0.63 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -2.67 Total: -21.91 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.70 Total: -32.61 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.72 Total: 16.72 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -4.48 Total: -9.67 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.28 -10.87 -43.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075076680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.926 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds