Wall clock time and date at job start Tue Mar 31 2020 07:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00194 * 2 1 4 4 H 1.48498 * 109.47063 * 270.00084 * 3 2 1 5 5 H 1.48502 * 109.46899 * 30.00097 * 3 2 1 6 6 H 1.48507 * 109.47213 * 149.99569 * 3 2 1 7 7 C 1.38805 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99806 * 0.02562 * 7 2 1 9 9 S 1.76193 * 119.99931 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00016 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47475 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47262 * 179.97438 * 11 10 9 13 13 S 1.81006 * 109.47053 * 179.97438 * 12 11 10 14 14 C 1.76198 * 100.00095 * 179.97438 * 13 12 11 15 15 N 1.29794 * 126.22960 * 359.97438 * 14 13 12 16 16 C 1.36556 * 113.80864 * 180.02562 * 15 14 13 17 17 C 1.40002 * 131.23919 * 179.97438 * 16 15 14 18 18 C 1.37808 * 120.01788 * 180.02562 * 17 16 15 19 19 C 1.38379 * 120.54301 * 0.02570 * 18 17 16 20 20 C 1.38554 * 119.93252 * 359.95037 * 19 18 17 21 21 C 1.37267 * 119.88732 * 0.05371 * 20 19 18 22 22 C 1.51174 * 133.72135 * 179.97438 * 21 20 19 23 23 H 0.97002 * 119.99752 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47245 * 59.99686 * 10 9 7 25 25 H 1.09006 * 109.47087 * 299.99619 * 10 9 7 26 26 H 1.08998 * 109.47207 * 59.99581 * 11 10 9 27 27 H 1.09006 * 109.47006 * 299.99513 * 11 10 9 28 28 H 1.08998 * 109.47247 * 59.99733 * 12 11 10 29 29 H 1.08993 * 109.47295 * 299.99392 * 12 11 10 30 30 H 1.07997 * 119.99046 * 0.02562 * 17 16 15 31 31 H 1.07996 * 119.73109 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.03405 * 179.97438 * 19 18 17 33 33 H 1.08005 * 120.05601 * 180.02562 * 20 19 18 34 34 H 1.09003 * 110.67019 * 61.58216 * 22 21 20 35 35 H 1.08998 * 110.80757 * 298.52251 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9845 0.0009 11 6 5.5957 -3.2364 0.0021 12 6 5.8613 -4.7431 0.0025 13 16 7.6467 -5.0410 0.0032 14 6 7.6630 -6.8029 0.0043 15 7 6.6231 -7.5796 0.0050 16 6 6.9291 -8.9105 0.0064 17 6 6.1100 -10.0458 0.0080 18 6 6.6742 -11.3031 0.0097 19 6 8.0495 -11.4566 0.0105 20 6 8.8698 -10.3401 0.0084 21 6 8.3157 -9.0842 0.0068 22 6 8.8935 -7.6872 0.0049 23 1 -0.4850 0.8401 -0.0004 24 1 3.6439 -3.4314 -0.8893 25 1 3.6433 -3.4318 0.8907 26 1 6.0379 -2.7896 0.8925 27 1 6.0394 -2.7891 -0.8875 28 1 5.4190 -5.1903 -0.8877 29 1 5.4178 -5.1900 0.8922 30 1 5.0356 -9.9363 0.0079 31 1 6.0380 -12.1757 0.0105 32 1 8.4829 -12.4458 0.0122 33 1 9.9435 -10.4576 0.0086 34 1 9.4890 -7.5184 -0.8923 35 1 9.4911 -7.5142 0.8999 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075076680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:39 Heat of formation + Delta-G solvation = 22.955516 kcal Electronic energy + Delta-G solvation = -16916.596133 eV Core-core repulsion = 14130.963673 eV Total energy + Delta-G solvation = -2785.632460 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86810 -37.75768 -35.81453 -34.69678 -32.75427 -30.53841 -29.28831 -28.59352 -27.81582 -24.46270 -22.81788 -22.47746 -21.62286 -19.64758 -17.96460 -17.24437 -17.13480 -16.98377 -16.73210 -16.40192 -16.18960 -15.74062 -14.99275 -14.88913 -14.76328 -14.17976 -14.02201 -13.82270 -13.48549 -13.35915 -13.03859 -12.93135 -12.73306 -12.62891 -12.15974 -12.04067 -11.99815 -11.77242 -11.59849 -11.17266 -10.70267 -10.60818 -10.04874 -9.85363 -9.01099 -8.55972 -8.52785 -6.24828 -0.51175 0.23367 0.33851 0.94459 1.14616 1.32602 1.39201 1.47935 1.73980 2.24378 2.65568 2.85172 2.87638 3.02526 3.41414 3.79679 3.87061 3.94761 3.96586 4.05387 4.20335 4.26259 4.34379 4.41962 4.52255 4.59434 4.67296 4.73276 4.86833 4.94940 5.12614 5.13481 5.35577 5.44979 5.47807 5.68563 5.87695 6.09324 6.54093 6.90670 8.60432 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.036487 B = 0.002478 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.209021 B =11295.503648 C =12031.587980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.036 3.964 3 Si 0.928 3.072 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.226 1.226 7 C -0.525 4.525 8 H 0.049 0.951 9 S -0.209 6.209 10 C -0.069 4.069 11 C -0.077 4.077 12 C -0.101 4.101 13 S 0.025 5.975 14 C 0.114 3.886 15 N -0.514 5.514 16 C 0.033 3.967 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.091 4.091 21 C -0.150 4.150 22 C -0.078 4.078 23 H 0.277 0.723 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.631 -20.692 0.122 31.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.169 4.169 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.149 1.149 7 C -0.673 4.673 8 H 0.067 0.933 9 S 0.019 5.981 10 C -0.219 4.219 11 C -0.117 4.117 12 C -0.251 4.251 13 S 0.264 5.736 14 C -0.175 4.175 15 N -0.229 5.229 16 C -0.074 4.074 17 C -0.128 4.128 18 C -0.131 4.131 19 C -0.132 4.132 20 C -0.109 4.109 21 C -0.154 4.154 22 C -0.118 4.118 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.171 0.829 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.160 0.840 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 24.073 -18.819 0.127 30.556 hybrid contribution -2.176 -1.530 -0.048 2.661 sum 21.897 -20.349 0.079 29.893 Atomic orbital electron populations 1.70044 1.07751 1.29173 1.49123 1.25835 0.95464 1.02941 0.92669 0.85685 0.80805 0.78360 0.80313 1.18480 1.18778 1.14923 1.22346 0.90183 0.96240 1.58507 0.93314 1.83747 1.07410 1.09340 1.97578 1.23079 0.99359 0.95642 1.03800 1.21025 0.93091 0.92754 1.04836 1.23521 0.95031 0.99777 1.06793 1.85522 1.08536 0.90458 1.89104 1.27824 0.94840 1.00049 0.94746 1.69396 1.33594 1.02662 1.17295 1.19901 0.94043 0.90585 1.02856 1.20867 0.99723 0.91036 1.01150 1.21321 0.96347 0.96373 0.99043 1.21666 0.93096 0.99855 0.98606 1.20604 1.01659 0.89587 0.99046 1.21437 0.94702 0.96170 1.03092 1.20884 0.96257 0.87761 1.06923 0.91370 0.91532 0.91503 0.89490 0.89471 0.89216 0.89211 0.86191 0.82860 0.82005 0.82761 0.84038 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.39 13.97 21.65 0.30 -57.09 16 2 C 0.04 2.10 5.50 84.86 0.47 2.57 16 3 Si 0.93 44.07 27.74 68.60 1.90 45.97 16 4 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.23 -10.24 6.74 99.48 0.67 -9.57 16 7 C -0.53 -31.26 10.04 67.96 0.68 -30.58 16 8 H 0.05 3.17 8.03 -2.91 -0.02 3.15 16 9 S -0.21 -9.97 19.41 -56.49 -1.10 -11.07 16 10 C -0.07 -2.62 5.67 71.98 0.41 -2.21 16 11 C -0.08 -2.19 5.22 30.59 0.16 -2.03 16 12 C -0.10 -2.57 5.22 71.98 0.38 -2.19 16 13 S 0.03 0.53 22.31 -56.49 -1.26 -0.73 16 14 C 0.11 2.56 7.59 88.68 0.67 3.23 16 15 N -0.51 -14.42 10.34 -176.06 -1.82 -16.24 16 16 C 0.03 0.83 7.09 39.20 0.28 1.11 16 17 C -0.11 -2.39 10.10 22.60 0.23 -2.16 16 18 C -0.11 -1.72 10.00 22.20 0.22 -1.49 16 19 C -0.11 -1.38 10.07 22.38 0.23 -1.16 16 20 C -0.09 -1.24 10.03 22.12 0.22 -1.02 16 21 C -0.15 -2.88 6.42 -19.58 -0.13 -3.01 16 22 C -0.08 -1.23 6.94 29.52 0.20 -1.03 16 23 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 24 H 0.07 2.59 8.14 -2.40 -0.02 2.57 16 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.09 2.42 8.14 -2.40 -0.02 2.40 16 29 H 0.09 2.42 8.14 -2.40 -0.02 2.40 16 30 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 33 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 34 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.14 1.60 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -72.17 328.33 3.09 -69.08 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.04 Total: 10.04 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 4.02 Total: -39.95 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.52 Total: -73.33 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.90 Total: 45.97 kcal Atomic # 16 Polarization: -9.45 SS G_CDS: -2.36 Total: -11.80 kcal Total: -72.17 3.09 -69.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075076680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.034 kcal (2) G-P(sol) polarization free energy of solvation -72.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds