Wall clock time and date at job start Tue Mar 31 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46494 * 120.00508 * 2 1 4 4 C 1.50704 * 109.46704 * 269.99485 * 3 2 1 5 5 H 1.07992 * 120.00219 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99894 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00485 * 180.02562 * 6 4 3 8 8 Si 1.86808 * 119.99900 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.46934 * 90.00025 * 8 6 4 10 10 H 1.48500 * 109.47185 * 210.00049 * 8 6 4 11 11 H 1.48501 * 109.47169 * 330.00124 * 8 6 4 12 12 C 1.34781 * 119.99349 * 179.97438 * 2 1 3 13 13 O 1.21665 * 119.99643 * 183.35583 * 12 2 1 14 14 C 1.46981 * 120.00316 * 3.36275 * 12 2 1 15 15 C 1.35809 * 125.13549 * 172.96521 * 14 12 2 16 16 C 1.46245 * 106.08258 * 180.12114 * 15 14 12 17 17 C 1.39726 * 134.17868 * 179.97438 * 16 15 14 18 18 C 1.36605 * 119.73655 * 179.67671 * 17 16 15 19 19 C 1.38841 * 120.45609 * 359.97438 * 18 17 16 20 20 C 1.37894 * 120.72271 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.08023 * 180.02562 * 20 19 18 22 22 C 1.39129 * 119.83725 * 359.97438 * 20 19 18 23 23 O 1.34732 * 133.24403 * 180.02562 * 22 20 19 24 24 H 1.08997 * 109.48022 * 263.92137 * 1 2 3 25 25 H 1.09004 * 109.46678 * 23.92352 * 1 2 3 26 26 H 1.08998 * 109.47320 * 143.91742 * 1 2 3 27 27 H 1.08998 * 109.47099 * 29.99552 * 3 2 1 28 28 H 1.09001 * 109.47717 * 150.00053 * 3 2 1 29 29 H 0.96996 * 120.00492 * 179.97438 * 7 6 4 30 30 H 1.08002 * 126.95713 * 359.79229 * 15 14 12 31 31 H 1.08007 * 120.12919 * 359.69352 * 17 16 15 32 32 H 1.08001 * 119.77915 * 180.02562 * 18 17 16 33 33 H 1.07991 * 119.63741 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7035 -1.4209 5 1 2.0976 1.0959 -2.2417 6 6 3.1262 2.8776 -1.6729 7 7 3.3451 3.2575 -2.9128 8 14 3.7332 3.9290 -0.2531 9 1 5.1067 3.5078 0.1228 10 1 3.7482 5.3557 -0.6646 11 1 2.8273 3.7591 0.9113 12 6 2.1387 -1.1673 0.0005 13 8 3.3538 -1.1682 0.0622 14 6 1.4056 -2.4391 -0.0736 15 6 1.9765 -3.6631 -0.2162 16 6 0.8739 -4.6235 -0.2445 17 6 0.7959 -6.0131 -0.3677 18 6 -0.4241 -6.6274 -0.3511 19 6 -1.5863 -5.8806 -0.2122 20 6 -1.5312 -4.5083 -0.0882 21 17 -2.9947 -3.5909 0.0853 22 6 -0.2998 -3.8610 -0.1013 23 8 0.0642 -2.5675 -0.0024 24 1 -0.3635 -0.1088 1.0218 25 1 -0.3633 0.9394 -0.4168 26 1 -0.3634 -0.8305 -0.6052 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5138 29 1 3.8214 4.0837 -3.0901 30 1 3.0308 -3.8823 -0.2981 31 1 1.6967 -6.5993 -0.4753 32 1 -0.4852 -7.7015 -0.4458 33 1 -2.5438 -6.3798 -0.2012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084586031.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:51 Heat of formation + Delta-G solvation = 0.812746 kcal Electronic energy + Delta-G solvation = -20467.758088 eV Core-core repulsion = 17100.535773 eV Total energy + Delta-G solvation = -3367.222315 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.64439 -39.13284 -38.15063 -36.65933 -35.23100 -32.75474 -32.60812 -30.62317 -29.93648 -28.46413 -26.16642 -24.44587 -22.99813 -22.27088 -21.39716 -19.54187 -17.89869 -17.38666 -17.06139 -16.49401 -16.36910 -15.53941 -15.17235 -14.67678 -14.61492 -14.10278 -13.65778 -13.32478 -13.16428 -13.03355 -12.62674 -12.50021 -12.33168 -11.98314 -11.81915 -11.61865 -11.40756 -11.18598 -10.94894 -10.57723 -10.22361 -10.11353 -9.76380 -9.52004 -8.89770 -8.64190 -8.40551 -7.85513 -6.13625 -4.14109 0.37017 0.99295 1.77273 1.83369 2.38099 3.26440 3.29506 3.32190 3.34059 3.45406 3.64402 4.33678 4.35570 4.39314 4.60591 4.87189 4.88594 5.06688 5.20252 5.21574 5.45753 5.62541 5.74766 5.81470 5.87816 6.01741 6.13419 6.21496 6.28879 6.56555 6.78165 6.85297 7.13508 7.51529 7.96561 8.36116 8.60159 8.89291 9.44945 10.99450 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.026507 B = 0.003973 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.076185 B = 7046.575665 C = 7673.276405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.578 5.578 3 C 0.214 3.786 4 C -0.535 4.535 5 H 0.076 0.924 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.876 3.124 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.584 3.416 13 O -0.513 6.513 14 C 0.006 3.994 15 C -0.132 4.132 16 C -0.123 4.123 17 C -0.057 4.057 18 C -0.131 4.131 19 C -0.082 4.082 20 C -0.026 4.026 21 Cl -0.057 7.057 22 C 0.061 3.939 23 O -0.165 6.165 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.266 0.734 30 H 0.173 0.827 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.155 -18.868 7.132 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.308 5.308 3 C 0.094 3.906 4 C -0.574 4.574 5 H 0.094 0.906 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.368 3.632 13 O -0.391 6.391 14 C -0.044 4.044 15 C -0.153 4.153 16 C -0.124 4.124 17 C -0.076 4.076 18 C -0.149 4.149 19 C -0.101 4.101 20 C -0.053 4.053 21 Cl -0.028 7.028 22 C 0.012 3.988 23 O -0.066 6.066 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.191 0.809 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.758 -18.323 7.105 22.404 hybrid contribution 0.172 0.652 0.474 0.824 sum -10.586 -17.671 7.579 21.949 Atomic orbital electron populations 1.21938 0.79774 1.03654 1.01221 1.47829 1.07094 1.06719 1.69120 1.19835 0.92625 0.79283 0.98847 1.21292 1.37548 1.07548 0.90979 0.90578 1.24840 0.95072 0.97227 0.95661 1.69885 1.41118 1.23512 1.18692 0.86851 0.80199 0.79839 0.82840 1.19751 1.20935 1.18970 1.16735 0.86276 0.81084 0.79065 1.90864 1.11668 1.85423 1.51134 1.22665 0.79724 0.96980 1.05062 1.22678 0.99795 0.89194 1.03621 1.19892 0.91939 0.94615 1.06000 1.20471 0.98731 0.91612 0.96752 1.20711 0.91220 1.00426 1.02526 1.20900 1.00160 0.90015 0.99055 1.19722 0.84171 0.91673 1.09757 1.98390 1.34321 1.74002 1.96107 1.19451 0.93827 0.83248 1.02264 1.84471 1.23069 1.24198 1.74860 0.93036 0.89862 0.90752 0.94517 0.94018 0.92412 0.80927 0.84568 0.84316 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 9.59 59.84 0.57 1.89 16 2 N -0.58 -12.34 2.86 -184.40 -0.53 -12.87 16 3 C 0.21 5.21 4.23 -5.19 -0.02 5.19 16 4 C -0.54 -15.29 9.94 -34.44 -0.34 -15.64 16 5 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.16 5.47 -17.82 -0.10 2.07 16 7 N -0.89 -27.34 13.96 55.43 0.77 -26.57 16 8 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 12 C 0.58 12.39 7.65 -12.72 -0.10 12.30 16 13 O -0.51 -12.42 16.39 5.22 0.09 -12.33 16 14 C 0.01 0.10 6.73 -36.91 -0.25 -0.15 16 15 C -0.13 -1.98 10.81 -37.24 -0.40 -2.38 16 16 C -0.12 -1.61 6.38 -105.20 -0.67 -2.28 16 17 C -0.06 -0.55 10.06 -39.62 -0.40 -0.95 16 18 C -0.13 -1.03 9.98 -39.95 -0.40 -1.43 16 19 C -0.08 -0.72 9.79 -39.48 -0.39 -1.11 16 20 C -0.03 -0.30 6.33 -39.38 -0.25 -0.55 16 21 Cl -0.06 -0.64 28.96 -51.86 -1.50 -2.14 16 22 C 0.06 0.86 7.20 -38.32 -0.28 0.58 16 23 O -0.16 -2.62 7.14 2.74 0.02 -2.60 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 26 H 0.07 1.22 5.40 -51.93 -0.28 0.94 16 27 H 0.04 0.84 7.13 -51.93 -0.37 0.47 16 28 H 0.04 1.06 6.80 -51.93 -0.35 0.71 16 29 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 31 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -32.89 305.78 -7.35 -40.24 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -3.12 Total: -2.43 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.02 Total: -2.46 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.25 Total: -39.44 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.11 Total: -14.93 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.89 -7.35 -40.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084586031.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.055 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds