Wall clock time and date at job start Tue Mar 31 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46494 * 120.00508 * 2 1 4 4 C 1.50704 * 109.46704 * 269.99485 * 3 2 1 5 5 H 1.07992 * 120.00219 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99894 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00485 * 180.02562 * 6 4 3 8 8 Si 1.86808 * 119.99900 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.46934 * 90.00025 * 8 6 4 10 10 H 1.48500 * 109.47185 * 210.00049 * 8 6 4 11 11 H 1.48501 * 109.47169 * 330.00124 * 8 6 4 12 12 C 1.34781 * 119.99349 * 179.97438 * 2 1 3 13 13 O 1.21665 * 119.99643 * 183.35583 * 12 2 1 14 14 C 1.46981 * 120.00316 * 3.36275 * 12 2 1 15 15 C 1.35809 * 125.13549 * 172.96521 * 14 12 2 16 16 C 1.46245 * 106.08258 * 180.12114 * 15 14 12 17 17 C 1.39726 * 134.17868 * 179.97438 * 16 15 14 18 18 C 1.36605 * 119.73655 * 179.67671 * 17 16 15 19 19 C 1.38841 * 120.45609 * 359.97438 * 18 17 16 20 20 C 1.37894 * 120.72271 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.08023 * 180.02562 * 20 19 18 22 22 C 1.39129 * 119.83725 * 359.97438 * 20 19 18 23 23 O 1.34732 * 133.24403 * 180.02562 * 22 20 19 24 24 H 1.08997 * 109.48022 * 263.92137 * 1 2 3 25 25 H 1.09004 * 109.46678 * 23.92352 * 1 2 3 26 26 H 1.08998 * 109.47320 * 143.91742 * 1 2 3 27 27 H 1.08998 * 109.47099 * 29.99552 * 3 2 1 28 28 H 1.09001 * 109.47717 * 150.00053 * 3 2 1 29 29 H 0.96996 * 120.00492 * 179.97438 * 7 6 4 30 30 H 1.08002 * 126.95713 * 359.79229 * 15 14 12 31 31 H 1.08007 * 120.12919 * 359.69352 * 17 16 15 32 32 H 1.08001 * 119.77915 * 180.02562 * 18 17 16 33 33 H 1.07991 * 119.63741 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7035 -1.4209 5 1 2.0976 1.0959 -2.2417 6 6 3.1262 2.8776 -1.6729 7 7 3.3451 3.2575 -2.9128 8 14 3.7332 3.9290 -0.2531 9 1 5.1067 3.5078 0.1228 10 1 3.7482 5.3557 -0.6646 11 1 2.8273 3.7591 0.9113 12 6 2.1387 -1.1673 0.0005 13 8 3.3538 -1.1682 0.0622 14 6 1.4056 -2.4391 -0.0736 15 6 1.9765 -3.6631 -0.2162 16 6 0.8739 -4.6235 -0.2445 17 6 0.7959 -6.0131 -0.3677 18 6 -0.4241 -6.6274 -0.3511 19 6 -1.5863 -5.8806 -0.2122 20 6 -1.5312 -4.5083 -0.0882 21 17 -2.9947 -3.5909 0.0853 22 6 -0.2998 -3.8610 -0.1013 23 8 0.0642 -2.5675 -0.0024 24 1 -0.3635 -0.1088 1.0218 25 1 -0.3633 0.9394 -0.4168 26 1 -0.3634 -0.8305 -0.6052 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5138 29 1 3.8214 4.0837 -3.0901 30 1 3.0308 -3.8823 -0.2981 31 1 1.6967 -6.5993 -0.4753 32 1 -0.4852 -7.7015 -0.4458 33 1 -2.5438 -6.3798 -0.2012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084586031.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:51 Heat of formation + Delta-G solvation = -20.047936 kcal Electronic energy + Delta-G solvation = -20468.662675 eV Core-core repulsion = 17100.535773 eV Total energy + Delta-G solvation = -3368.126902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.71602 -40.68811 -39.08215 -37.50255 -36.93845 -34.75461 -33.80837 -31.65854 -31.10625 -30.10526 -27.67096 -25.93754 -24.01156 -23.64788 -22.56803 -20.96037 -19.20278 -18.98396 -18.63610 -17.70704 -17.49272 -17.10105 -16.42222 -16.12048 -15.75979 -15.53331 -15.06389 -14.57386 -14.41929 -14.28214 -14.09840 -14.00551 -13.70191 -13.34590 -13.10818 -12.82549 -12.63705 -12.46148 -12.30518 -12.09061 -12.02864 -11.78479 -11.36034 -11.14007 -10.85416 -9.84454 -9.66118 -9.26000 -8.36481 -6.43851 -0.61678 0.14457 0.64786 0.99080 1.25738 1.34358 1.37880 1.46573 1.92520 2.14937 2.30050 2.51649 2.97153 3.15077 3.49046 3.77026 3.84938 4.11559 4.18390 4.30334 4.32170 4.50393 4.51597 4.69537 4.77983 4.83265 4.99447 5.01927 5.16409 5.30617 5.34126 5.39081 5.49805 5.80473 6.16513 6.34860 6.57342 6.92823 7.21064 8.80421 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.026507 B = 0.003973 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.076185 B = 7046.575665 C = 7673.276405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.590 5.590 3 C 0.222 3.778 4 C -0.545 4.545 5 H 0.027 0.973 6 C 0.015 3.985 7 N -0.943 5.943 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.237 1.237 12 C 0.580 3.420 13 O -0.559 6.559 14 C -0.034 4.034 15 C -0.111 4.111 16 C -0.144 4.144 17 C -0.052 4.052 18 C -0.116 4.116 19 C -0.062 4.062 20 C -0.049 4.049 21 Cl -0.061 7.061 22 C 0.042 3.958 23 O -0.175 6.175 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.271 0.729 30 H 0.181 0.819 31 H 0.165 0.835 32 H 0.184 0.816 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.505 -21.435 8.730 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.318 5.318 3 C 0.101 3.899 4 C -0.583 4.583 5 H 0.046 0.954 6 C -0.184 4.184 7 N -0.582 5.582 8 Si 0.771 3.229 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.160 1.160 12 C 0.367 3.633 13 O -0.440 6.440 14 C -0.083 4.083 15 C -0.132 4.132 16 C -0.145 4.145 17 C -0.070 4.070 18 C -0.134 4.134 19 C -0.080 4.080 20 C -0.076 4.076 21 Cl -0.032 7.032 22 C -0.007 4.007 23 O -0.078 6.078 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.198 0.802 31 H 0.183 0.817 32 H 0.201 0.799 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -12.163 -20.915 8.710 25.714 hybrid contribution 0.467 1.154 -0.124 1.251 sum -11.695 -19.761 8.586 24.515 Atomic orbital electron populations 1.22081 0.77398 1.03814 1.02987 1.47892 1.08633 1.06002 1.69319 1.19552 0.93100 0.81268 0.95991 1.21488 1.37582 1.07260 0.92009 0.95419 1.25850 0.94979 0.98718 0.98813 1.70039 1.42316 1.24459 1.21408 0.85692 0.79787 0.77720 0.79655 1.19717 1.19898 1.15962 1.17156 0.86134 0.82221 0.77769 1.90804 1.13515 1.86519 1.53151 1.21854 0.80844 0.95757 1.09848 1.22964 1.00769 0.89085 1.00333 1.20051 0.90506 0.96033 1.07881 1.20926 1.00920 0.90052 0.95103 1.21262 0.89817 1.02478 0.99848 1.21463 1.02220 0.88734 0.95622 1.20027 0.83357 0.92726 1.11494 1.98386 1.34151 1.74433 1.96232 1.19914 0.95260 0.82536 1.02964 1.84353 1.21954 1.25715 1.75736 0.90400 0.89943 0.90345 0.92250 0.95065 0.92048 0.80167 0.81709 0.79853 0.80527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.74 9.59 127.77 1.23 3.96 16 2 N -0.59 -26.06 2.86 -855.56 -2.44 -28.50 16 3 C 0.22 11.03 4.23 85.64 0.36 11.39 16 4 C -0.55 -32.51 9.94 25.60 0.25 -32.25 16 5 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 6 C 0.01 0.89 5.47 84.66 0.46 1.35 16 7 N -0.94 -59.71 13.96 21.45 0.30 -59.41 16 8 Si 0.95 44.03 27.47 68.60 1.88 45.91 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 12 C 0.58 25.83 7.65 86.53 0.66 26.49 16 13 O -0.56 -28.50 16.39 -4.24 -0.07 -28.57 16 14 C -0.03 -1.21 6.73 24.00 0.16 -1.05 16 15 C -0.11 -3.33 10.81 23.79 0.26 -3.08 16 16 C -0.14 -3.51 6.38 -20.24 -0.13 -3.64 16 17 C -0.05 -0.79 10.06 22.25 0.22 -0.57 16 18 C -0.12 -1.21 9.98 22.03 0.22 -0.99 16 19 C -0.06 -0.82 9.79 22.33 0.22 -0.60 16 20 C -0.05 -1.03 6.33 22.40 0.14 -0.89 16 21 Cl -0.06 -1.28 28.96 -2.72 -0.08 -1.36 16 22 C 0.04 1.14 7.20 23.08 0.17 1.30 16 23 O -0.18 -5.67 7.14 -13.13 -0.09 -5.76 16 24 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.08 2.82 8.03 -2.39 -0.02 2.80 16 26 H 0.08 2.67 5.40 -2.39 -0.01 2.66 16 27 H 0.06 2.67 7.13 -2.39 -0.02 2.65 16 28 H 0.03 1.62 6.80 -2.39 -0.02 1.60 16 29 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 30 H 0.18 4.91 8.06 -2.91 -0.02 4.89 16 31 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 33 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -76.77 305.78 4.82 -71.96 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.09 Total: 4.30 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 4.23 Total: 1.43 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -2.14 Total: -87.91 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.16 Total: -34.33 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -76.77 4.82 -71.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084586031.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.908 kcal (2) G-P(sol) polarization free energy of solvation -76.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds