Wall clock time and date at job start Tue Mar 31 2020 06:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47097 * 2 1 4 4 C 1.50707 * 109.46692 * 240.00368 * 2 1 3 5 5 H 1.07997 * 120.00412 * 275.00321 * 4 2 1 6 6 C 1.37878 * 119.99902 * 95.00630 * 4 2 1 7 7 N 1.31508 * 120.00170 * 184.90962 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 4.91088 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83582 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83521 * 8 6 4 12 12 N 1.46495 * 109.46950 * 120.00931 * 2 1 3 13 13 C 1.34780 * 119.99388 * 274.99377 * 12 2 1 14 14 O 1.21652 * 120.00735 * 0.02562 * 13 12 2 15 15 C 1.46987 * 119.99597 * 180.02562 * 13 12 2 16 16 C 1.35808 * 125.13058 * 180.02562 * 15 13 12 17 17 C 1.46249 * 106.07996 * 179.97438 * 16 15 13 18 18 C 1.39735 * 134.18370 * 180.02562 * 17 16 15 19 19 C 1.36610 * 119.73215 * 180.02562 * 18 17 16 20 20 C 1.38839 * 120.46208 * 359.96213 * 19 18 17 21 21 C 1.37890 * 120.72224 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.08239 * 180.02562 * 21 20 19 23 23 C 1.39136 * 119.83742 * 359.97438 * 21 20 19 24 24 O 1.34726 * 133.24284 * 180.29677 * 23 21 20 25 25 H 1.09006 * 109.47034 * 55.03017 * 1 2 3 26 26 H 1.08993 * 109.47019 * 295.03459 * 1 2 3 27 27 H 1.09001 * 109.47478 * 175.02850 * 1 2 3 28 28 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00171 * 94.99890 * 12 2 1 30 30 H 1.07993 * 126.96081 * 359.94802 * 16 15 13 31 31 H 1.08003 * 120.12882 * 359.97438 * 18 17 16 32 32 H 1.08004 * 119.76639 * 179.97438 * 19 18 17 33 33 H 1.07995 * 119.63528 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0183 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8574 1.1618 2.4120 15 6 2.6375 -0.7114 3.5570 16 6 2.8064 -0.1379 4.7764 17 6 3.3066 -1.1946 5.6552 18 6 3.6701 -1.2493 7.0033 19 6 4.1126 -2.4257 7.5385 20 6 4.2027 -3.5667 6.7526 21 6 3.8487 -3.5341 5.4203 22 17 3.9673 -4.9709 4.4531 23 6 3.3953 -2.3472 4.8533 24 8 2.9827 -2.0146 3.6146 25 1 -0.3633 0.5890 -0.8422 26 1 -0.3633 0.4348 0.9311 27 1 -0.3634 -1.0238 -0.0891 28 1 2.9363 -0.1045 -4.2556 29 1 2.2490 -1.6319 1.1524 30 1 2.6113 0.8902 5.0431 31 1 3.6023 -0.3648 7.6194 32 1 4.3942 -2.4685 8.5803 33 1 4.5547 -4.4895 7.1893 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084589223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:02 Heat of formation + Delta-G solvation = -37.885793 kcal Electronic energy + Delta-G solvation = -20205.781165 eV Core-core repulsion = 16836.880756 eV Total energy + Delta-G solvation = -3368.900409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.68584 -40.66975 -39.10416 -37.51231 -36.92585 -34.49106 -33.81050 -32.17604 -31.29668 -30.40960 -27.39450 -25.67764 -23.94102 -23.03304 -22.32775 -21.52951 -20.02779 -18.74577 -18.50550 -17.68755 -17.55092 -17.07805 -16.45523 -15.88077 -15.81061 -15.54216 -15.07868 -14.59826 -14.50868 -14.36333 -14.12768 -14.05066 -13.37943 -13.19771 -13.06497 -12.84442 -12.67194 -12.52259 -12.37614 -12.05005 -11.89530 -11.39707 -11.30950 -11.14960 -10.87745 -10.10562 -9.79331 -9.30922 -8.42115 -6.50642 -0.62819 0.12538 0.63950 0.98057 1.27617 1.30785 1.33600 1.44007 2.01347 2.17522 2.25365 2.50351 2.96853 3.32539 3.47678 3.79309 3.89766 4.16364 4.21611 4.30618 4.38678 4.52471 4.67473 4.74580 4.87923 4.99834 5.01949 5.15476 5.23930 5.29105 5.38963 5.45972 5.54764 5.78586 6.05323 6.51916 6.64591 7.00378 7.19244 8.72961 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.004012 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.398274 B = 6977.590032 C = 7797.935242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.232 3.768 3 H 0.041 0.959 4 C -0.534 4.534 5 H 0.052 0.948 6 C 0.034 3.966 7 N -0.928 5.928 8 Si 0.929 3.071 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.249 1.249 12 N -0.689 5.689 13 C 0.585 3.415 14 O -0.560 6.560 15 C -0.039 4.039 16 C -0.104 4.104 17 C -0.144 4.144 18 C -0.049 4.049 19 C -0.117 4.117 20 C -0.061 4.061 21 C -0.053 4.053 22 Cl -0.066 7.066 23 C 0.046 3.954 24 O -0.191 6.191 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.272 0.728 29 H 0.406 0.594 30 H 0.189 0.811 31 H 0.170 0.830 32 H 0.186 0.814 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 -4.253 25.539 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.130 3.870 3 H 0.059 0.941 4 C -0.572 4.572 5 H 0.070 0.930 6 C -0.167 4.167 7 N -0.566 5.566 8 Si 0.753 3.247 9 H -0.198 1.198 10 H -0.200 1.200 11 H -0.173 1.173 12 N -0.336 5.336 13 C 0.371 3.629 14 O -0.442 6.442 15 C -0.089 4.089 16 C -0.124 4.124 17 C -0.145 4.145 18 C -0.066 4.066 19 C -0.134 4.134 20 C -0.080 4.080 21 C -0.080 4.080 22 Cl -0.037 7.037 23 C -0.003 4.003 24 O -0.093 6.093 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.241 0.759 30 H 0.206 0.794 31 H 0.187 0.813 32 H 0.203 0.797 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.843 -3.736 24.981 25.418 hybrid contribution 0.151 0.042 -1.103 1.114 sum 2.994 -3.694 23.877 24.346 Atomic orbital electron populations 1.22126 0.96373 1.01500 1.00106 1.19075 0.92517 0.93323 0.82121 0.94142 1.21141 1.45142 0.94705 0.96184 0.92962 1.25659 0.93340 1.02971 0.94739 1.69979 1.46055 1.38059 1.02510 0.86016 0.80013 0.80604 0.78087 1.19785 1.19952 1.17318 1.46508 1.63324 1.14568 1.09196 1.17047 0.78248 0.85778 0.81847 1.90798 1.53494 1.15264 1.84609 1.22006 1.07608 0.82206 0.97077 1.23008 0.99031 1.00863 0.89530 1.20099 1.06380 0.91423 0.96618 1.20951 0.94252 1.00722 0.90721 1.21284 0.99568 0.90330 1.02243 1.21464 0.95974 1.01897 0.88620 1.20097 1.09303 0.84934 0.93705 1.98395 1.96878 1.36742 1.71657 1.19814 1.01162 0.95977 0.83299 1.84062 1.68787 1.25839 1.30631 0.92501 0.93890 0.92547 0.91828 0.75909 0.79362 0.81265 0.79716 0.80638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.15 9.47 71.98 0.68 -5.47 16 2 C 0.23 11.21 2.22 44.25 0.10 11.31 16 3 H 0.04 2.07 4.73 -2.39 -0.01 2.06 16 4 C -0.53 -29.54 9.05 25.60 0.23 -29.31 16 5 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 6 C 0.03 1.92 5.47 84.66 0.46 2.38 16 7 N -0.93 -55.79 13.96 21.45 0.30 -55.49 16 8 Si 0.93 44.14 26.99 68.60 1.85 45.99 16 9 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.25 -11.36 6.82 99.48 0.68 -10.68 16 12 N -0.69 -29.64 5.07 -449.79 -2.28 -31.92 16 13 C 0.58 23.78 7.76 86.54 0.67 24.45 16 14 O -0.56 -25.12 16.49 -4.20 -0.07 -25.19 16 15 C -0.04 -1.34 7.07 24.00 0.17 -1.17 16 16 C -0.10 -2.82 10.81 23.79 0.26 -2.56 16 17 C -0.14 -3.33 6.38 -20.23 -0.13 -3.46 16 18 C -0.05 -0.67 10.06 22.25 0.22 -0.45 16 19 C -0.12 -1.13 9.98 22.03 0.22 -0.91 16 20 C -0.06 -0.82 9.79 22.33 0.22 -0.61 16 21 C -0.05 -1.18 6.33 22.40 0.14 -1.04 16 22 Cl -0.07 -1.54 28.96 -2.72 -0.08 -1.62 16 23 C 0.05 1.27 7.20 23.09 0.17 1.44 16 24 O -0.19 -6.37 10.28 -13.02 -0.13 -6.50 16 25 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.41 16.55 8.31 -92.71 -0.77 15.78 16 30 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 33 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -69.29 310.41 3.37 -65.92 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.36 Total: 14.20 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 3.41 Total: -5.39 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -1.98 Total: -87.41 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.20 Total: -31.69 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.85 Total: 45.99 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -69.29 3.37 -65.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084589223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.034 kcal (2) G-P(sol) polarization free energy of solvation -69.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds