Wall clock time and date at job start Tue Mar 31 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48499 * 109.47133 * 239.99693 * 3 2 1 5 5 H 1.48507 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47400 * 119.99473 * 3 2 1 7 7 C 1.39951 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99815 * 197.84649 * 7 2 1 9 9 C 1.41391 * 119.99775 * 17.85196 * 7 2 1 10 10 C 1.40719 * 120.24202 * 204.38160 * 9 7 2 11 11 C 1.37616 * 119.74315 * 180.02562 * 10 9 7 12 12 C 1.38641 * 120.25162 * 0.02562 * 11 10 9 13 13 S 1.76194 * 119.74960 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.40411 * 336.46224 * 13 12 11 15 15 O 1.42107 * 106.40419 * 203.54105 * 13 12 11 16 16 N 1.65605 * 107.21909 * 90.00385 * 13 12 11 17 17 C 1.40798 * 119.99792 * 64.99407 * 16 13 12 18 18 C 1.40213 * 126.07172 * 315.00429 * 17 16 13 19 19 N 1.30864 * 108.36594 * 179.97438 * 18 17 16 20 20 N 1.40076 * 108.35899 * 0.02562 * 19 18 17 21 21 H 0.96998 * 126.06771 * 180.02562 * 20 19 18 22 22 C 1.35709 * 126.06447 * 135.00102 * 17 16 13 23 23 C 1.38636 * 120.49689 * 0.25643 * 12 11 10 24 24 C 1.37611 * 120.24927 * 359.44402 * 23 12 11 25 25 H 0.97005 * 119.99663 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.12838 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.87341 * 180.02562 * 11 10 9 28 28 H 0.97002 * 119.99936 * 244.99925 * 16 13 12 29 29 H 1.07999 * 125.81797 * 0.02562 * 18 17 16 30 30 H 1.08002 * 126.22136 * 359.74526 * 22 17 16 31 31 H 1.07999 * 119.87019 * 179.70361 * 23 12 11 32 32 H 1.08006 * 120.12939 * 180.27252 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2872 9 6 1.3519 -2.4072 -0.3743 10 6 1.8256 -3.6499 0.0855 11 6 1.1796 -4.8067 -0.2862 12 6 0.0664 -4.7511 -1.1107 13 16 -0.7502 -6.2405 -1.5789 14 8 0.2105 -7.2804 -1.4564 15 8 -1.4390 -5.9572 -2.7891 16 7 -1.9129 -6.5414 -0.4386 17 6 -2.9984 -5.6571 -0.2898 18 6 -2.9240 -4.2574 -0.2532 19 7 -4.1348 -3.7839 -0.1042 20 7 -5.0257 -4.8630 -0.0397 21 1 -5.9878 -4.8035 0.0684 22 6 -4.3024 -6.0083 -0.1564 23 6 -0.4055 -3.5327 -1.5743 24 6 0.2210 -2.3628 -1.2105 25 1 -0.4850 0.8401 -0.0004 26 1 2.6929 -3.6956 0.7275 27 1 1.5411 -5.7616 0.0658 28 1 -1.8460 -7.3267 0.1267 29 1 -2.0213 -3.6701 -0.3350 30 1 -4.6948 -7.0145 -0.1490 31 1 -1.2707 -3.5015 -2.2200 32 1 -0.1509 -1.4144 -1.5693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:51 Heat of formation + Delta-G solvation = 17.836587 kcal Electronic energy + Delta-G solvation = -20991.745339 eV Core-core repulsion = 17659.597691 eV Total energy + Delta-G solvation = -3332.147648 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89523 -37.65015 -36.49948 -35.15178 -34.62202 -34.07287 -31.15058 -30.25220 -29.50992 -28.17546 -25.84764 -22.19036 -21.44138 -21.12814 -20.80798 -19.06412 -17.93931 -17.62443 -17.05251 -16.55224 -15.54206 -15.53276 -14.50054 -14.38845 -14.33947 -14.00075 -13.41836 -13.21281 -12.97304 -12.42276 -12.19712 -11.77352 -11.68934 -11.46383 -11.35781 -11.30465 -11.22813 -11.07088 -10.87085 -10.45043 -10.31900 -9.74788 -9.51101 -9.44402 -9.41251 -7.97505 -7.94912 -7.71033 -7.15479 -4.81726 1.17917 1.99132 2.21695 2.84479 2.88526 2.90312 2.93989 2.96408 3.02354 3.66028 3.74821 4.21225 4.52906 4.96663 5.07130 5.30820 5.39186 5.56850 5.67604 6.05187 6.10642 6.29385 6.67185 6.69195 6.78661 6.90382 7.02262 7.28679 7.32387 7.39487 7.40432 7.60728 7.74991 7.81109 7.94815 8.29340 8.49239 8.62344 9.75374 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.005539 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.961390 B = 5053.405145 C = 6136.889547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.431 4.431 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.238 4.238 11 C 0.006 3.994 12 C -0.790 4.790 13 S 2.691 3.309 14 O -0.981 6.981 15 O -0.974 6.974 16 N -1.043 6.043 17 C 0.017 3.983 18 C 0.037 3.963 19 N -0.273 5.273 20 N -0.482 5.482 21 H 0.441 0.559 22 C 0.035 3.965 23 C -0.025 4.025 24 C -0.178 4.178 25 H 0.291 0.709 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.414 0.586 29 H 0.207 0.793 30 H 0.179 0.821 31 H 0.107 0.893 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 -5.704 2.132 9.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.458 4.458 8 H 0.106 0.894 9 C 0.135 3.865 10 C -0.259 4.259 11 C -0.015 4.015 12 C -0.887 4.887 13 S 2.791 3.209 14 O -0.972 6.972 15 O -0.965 6.965 16 N -0.791 5.791 17 C -0.090 4.090 18 C -0.152 4.152 19 N -0.095 5.095 20 N -0.193 5.193 21 H 0.285 0.715 22 C -0.115 4.115 23 C -0.046 4.046 24 C -0.198 4.198 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.248 0.752 29 H 0.224 0.776 30 H 0.196 0.804 31 H 0.125 0.875 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.573 -4.958 1.390 9.158 hybrid contribution 0.477 0.222 0.820 0.974 sum -7.096 -4.736 2.210 8.813 Atomic orbital electron populations 1.69796 1.07859 1.30678 1.29862 1.26147 0.94929 1.02152 0.91911 0.86185 0.80177 0.79120 0.80431 1.18343 1.19872 1.18569 1.19942 0.98487 0.91160 1.36198 0.89391 1.17857 0.90052 0.92161 0.86438 1.21041 1.04473 0.92636 1.07740 1.20159 0.91974 0.97362 0.91961 1.29068 1.16705 1.15599 1.27310 1.01406 0.72165 0.74496 0.72847 1.93502 1.60062 1.57011 1.86626 1.93500 1.74168 1.86107 1.42680 1.53140 1.36403 1.33940 1.55652 1.17250 0.87175 0.89459 1.15067 1.24993 0.97592 0.93470 0.99191 1.77409 0.99394 1.09771 1.22884 1.46195 1.09592 1.03556 1.59989 0.71547 1.22321 0.91383 0.92664 1.05158 1.20273 0.97075 0.91729 0.95488 1.21371 0.99798 0.96884 1.01795 0.89750 0.88126 0.87673 0.75188 0.77644 0.80435 0.87481 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.69 10.95 55.55 0.61 -17.08 16 2 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 3 Si 0.92 16.79 29.59 -169.99 -5.03 11.76 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 7 C -0.43 -10.31 9.05 -37.74 -0.34 -10.66 16 8 H 0.09 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.14 3.42 5.57 -106.82 -0.60 2.82 16 10 C -0.24 -5.48 9.80 -38.87 -0.38 -5.86 16 11 C 0.01 0.12 9.49 -39.66 -0.38 -0.25 16 12 C -0.79 -17.01 5.25 -39.29 -0.21 -17.22 16 13 S 2.69 51.83 5.61 -107.50 -0.60 51.23 16 14 O -0.98 -20.24 17.26 -57.17 -0.99 -21.22 16 15 O -0.97 -21.19 16.98 -57.17 -0.97 -22.16 16 16 N -1.04 -16.09 5.94 32.29 0.19 -15.90 16 17 C 0.02 0.27 6.41 -83.90 -0.54 -0.26 16 18 C 0.04 0.68 10.71 -17.22 -0.18 0.49 16 19 N -0.27 -4.71 12.69 30.70 0.39 -4.32 16 20 N -0.48 -6.05 7.41 30.71 0.23 -5.82 16 21 H 0.44 3.65 8.96 -182.62 -1.64 2.01 16 22 C 0.03 0.43 12.05 -16.63 -0.20 0.23 16 23 C -0.03 -0.57 6.32 -39.66 -0.25 -0.82 16 24 C -0.18 -4.32 8.70 -38.87 -0.34 -4.66 16 25 H 0.29 6.13 8.30 -40.82 -0.34 5.80 16 26 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 27 H 0.11 2.05 7.60 -52.49 -0.40 1.65 16 28 H 0.41 4.98 8.96 -34.47 -0.31 4.68 16 29 H 0.21 4.19 4.19 -52.49 -0.22 3.97 16 30 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.11 2.31 7.16 -52.49 -0.38 1.93 16 32 H 0.12 3.06 6.16 -52.48 -0.32 2.74 16 LS Contribution 291.59 15.07 4.39 4.39 Total: -1.00 -30.98 291.59 -8.94 -39.92 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -3.66 Total: 13.86 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: -3.50 Total: -34.66 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 1.42 Total: -43.11 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -1.96 Total: -43.39 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Atomic # 16 Polarization: 51.83 SS G_CDS: -0.60 Total: 51.23 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.98 -8.94 -39.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.758 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds