Wall clock time and date at job start Tue Mar 31 2020 06:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48499 * 109.47133 * 239.99693 * 3 2 1 5 5 H 1.48507 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47400 * 119.99473 * 3 2 1 7 7 C 1.39951 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99815 * 197.84649 * 7 2 1 9 9 C 1.41391 * 119.99775 * 17.85196 * 7 2 1 10 10 C 1.40719 * 120.24202 * 204.38160 * 9 7 2 11 11 C 1.37616 * 119.74315 * 180.02562 * 10 9 7 12 12 C 1.38641 * 120.25162 * 0.02562 * 11 10 9 13 13 S 1.76194 * 119.74960 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.40411 * 336.46224 * 13 12 11 15 15 O 1.42107 * 106.40419 * 203.54105 * 13 12 11 16 16 N 1.65605 * 107.21909 * 90.00385 * 13 12 11 17 17 C 1.40798 * 119.99792 * 64.99407 * 16 13 12 18 18 C 1.40213 * 126.07172 * 315.00429 * 17 16 13 19 19 N 1.30864 * 108.36594 * 179.97438 * 18 17 16 20 20 N 1.40076 * 108.35899 * 0.02562 * 19 18 17 21 21 H 0.96998 * 126.06771 * 180.02562 * 20 19 18 22 22 C 1.35709 * 126.06447 * 135.00102 * 17 16 13 23 23 C 1.38636 * 120.49689 * 0.25643 * 12 11 10 24 24 C 1.37611 * 120.24927 * 359.44402 * 23 12 11 25 25 H 0.97005 * 119.99663 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.12838 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.87341 * 180.02562 * 11 10 9 28 28 H 0.97002 * 119.99936 * 244.99925 * 16 13 12 29 29 H 1.07999 * 125.81797 * 0.02562 * 18 17 16 30 30 H 1.08002 * 126.22136 * 359.74526 * 22 17 16 31 31 H 1.07999 * 119.87019 * 179.70361 * 23 12 11 32 32 H 1.08006 * 120.12939 * 180.27252 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2872 9 6 1.3519 -2.4072 -0.3743 10 6 1.8256 -3.6499 0.0855 11 6 1.1796 -4.8067 -0.2862 12 6 0.0664 -4.7511 -1.1107 13 16 -0.7502 -6.2405 -1.5789 14 8 0.2105 -7.2804 -1.4564 15 8 -1.4390 -5.9572 -2.7891 16 7 -1.9129 -6.5414 -0.4386 17 6 -2.9984 -5.6571 -0.2898 18 6 -2.9240 -4.2574 -0.2532 19 7 -4.1348 -3.7839 -0.1042 20 7 -5.0257 -4.8630 -0.0397 21 1 -5.9878 -4.8035 0.0684 22 6 -4.3024 -6.0083 -0.1564 23 6 -0.4055 -3.5327 -1.5743 24 6 0.2210 -2.3628 -1.2105 25 1 -0.4850 0.8401 -0.0004 26 1 2.6929 -3.6956 0.7275 27 1 1.5411 -5.7616 0.0658 28 1 -1.8460 -7.3267 0.1267 29 1 -2.0213 -3.6701 -0.3350 30 1 -4.6948 -7.0145 -0.1490 31 1 -1.2707 -3.5015 -2.2200 32 1 -0.1509 -1.4144 -1.5693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:50 Heat of formation + Delta-G solvation = -5.613206 kcal Electronic energy + Delta-G solvation = -20992.762198 eV Core-core repulsion = 17659.597691 eV Total energy + Delta-G solvation = -3333.164508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07443 -39.41620 -38.13556 -36.80023 -35.92226 -35.77569 -32.46328 -31.91891 -31.28078 -29.37151 -27.61453 -23.59826 -23.13382 -22.76613 -22.06964 -20.46636 -19.39747 -19.21241 -18.52054 -18.15255 -17.20217 -16.88654 -16.01012 -15.88867 -15.60588 -15.37800 -15.13983 -14.92056 -14.23640 -14.07597 -13.94209 -13.41133 -13.25412 -13.09620 -13.00677 -12.88796 -12.85559 -12.57523 -12.30847 -11.99905 -11.66769 -11.48695 -11.21017 -11.09148 -10.61787 -9.76033 -9.50842 -9.14167 -8.85306 -6.63107 -0.36104 0.48470 0.87986 1.06745 1.36950 1.45319 1.51053 1.66646 1.93197 2.12457 2.33226 2.53653 2.94053 3.51992 3.60381 3.97185 4.06266 4.30898 4.35743 4.43532 4.56022 4.87565 4.92739 5.02526 5.13856 5.25238 5.52758 5.53585 5.61508 5.77611 5.94870 6.16644 6.22246 6.42357 6.50254 6.67180 6.69859 6.82293 8.08639 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.005539 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.961390 B = 5053.405145 C = 6136.889547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.463 4.463 8 H 0.093 0.907 9 C 0.112 3.888 10 C -0.256 4.256 11 C 0.002 3.998 12 C -0.799 4.799 13 S 2.726 3.274 14 O -0.992 6.992 15 O -0.998 6.998 16 N -1.023 6.023 17 C -0.020 4.020 18 C 0.008 3.992 19 N -0.307 5.307 20 N -0.460 5.460 21 H 0.461 0.539 22 C 0.076 3.924 23 C -0.019 4.019 24 C -0.203 4.203 25 H 0.298 0.702 26 H 0.113 0.887 27 H 0.130 0.870 28 H 0.432 0.568 29 H 0.178 0.822 30 H 0.235 0.765 31 H 0.110 0.890 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 -7.164 2.678 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.489 4.489 8 H 0.111 0.889 9 C 0.108 3.892 10 C -0.276 4.276 11 C -0.017 4.017 12 C -0.893 4.893 13 S 2.822 3.178 14 O -0.982 6.982 15 O -0.988 6.988 16 N -0.777 5.777 17 C -0.127 4.127 18 C -0.179 4.179 19 N -0.130 5.130 20 N -0.173 5.173 21 H 0.309 0.691 22 C -0.076 4.076 23 C -0.039 4.039 24 C -0.223 4.223 25 H 0.109 0.891 26 H 0.131 0.869 27 H 0.147 0.853 28 H 0.271 0.729 29 H 0.195 0.805 30 H 0.251 0.749 31 H 0.127 0.873 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.824 -6.401 1.956 11.075 hybrid contribution 0.662 0.512 0.667 1.070 sum -8.161 -5.889 2.623 10.401 Atomic orbital electron populations 1.69846 1.09286 1.31917 1.30329 1.26995 0.95567 1.05137 0.90841 0.85114 0.78795 0.74721 0.80436 1.18289 1.18973 1.17797 1.20223 0.98968 0.92051 1.37678 0.88909 1.18196 0.90585 0.93353 0.87030 1.21269 1.05252 0.92702 1.08381 1.20464 0.91697 0.98011 0.91565 1.29539 1.16964 1.16558 1.26223 1.00385 0.71905 0.73003 0.72530 1.93482 1.61084 1.56722 1.86920 1.93469 1.74574 1.86219 1.44506 1.52468 1.35469 1.34429 1.55334 1.17423 0.88648 0.88445 1.18159 1.24707 0.97328 0.94877 1.01036 1.77327 0.99718 1.11753 1.24220 1.46277 1.10376 1.02799 1.57849 0.69077 1.23079 0.89668 0.94383 1.00487 1.20319 0.96643 0.91894 0.95069 1.21335 1.00842 0.96979 1.03150 0.89058 0.86918 0.85252 0.72900 0.80523 0.74868 0.87254 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.34 10.95 21.83 0.24 -38.10 16 2 C 0.03 1.60 5.14 85.26 0.44 2.04 16 3 Si 0.99 34.75 29.59 68.60 2.03 36.78 16 4 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 5 H -0.27 -8.85 7.11 99.48 0.71 -8.14 16 6 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 7 C -0.46 -22.99 9.05 23.46 0.21 -22.78 16 8 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 9 C 0.11 5.77 5.57 -21.29 -0.12 5.65 16 10 C -0.26 -12.06 9.80 22.73 0.22 -11.84 16 11 C 0.00 0.11 9.49 22.22 0.21 0.32 16 12 C -0.80 -34.76 5.25 22.46 0.12 -34.65 16 13 S 2.73 101.75 5.61 -56.49 -0.32 101.44 16 14 O -0.99 -39.05 17.26 -128.00 -2.21 -41.26 16 15 O -1.00 -42.51 16.98 -128.00 -2.17 -44.68 16 16 N -1.02 -29.16 5.94 -51.74 -0.31 -29.46 16 17 C -0.02 -0.61 6.41 37.59 0.24 -0.37 16 18 C 0.01 0.31 10.71 85.32 0.91 1.22 16 19 N -0.31 -10.40 12.69 -56.78 -0.72 -11.12 16 20 N -0.46 -10.10 7.41 -56.75 -0.42 -10.52 16 21 H 0.46 5.92 8.96 -213.34 -1.91 4.01 16 22 C 0.08 1.54 12.05 83.47 1.01 2.55 16 23 C -0.02 -0.90 6.32 22.22 0.14 -0.76 16 24 C -0.20 -10.39 8.70 22.73 0.20 -10.19 16 25 H 0.30 12.99 8.30 -92.70 -0.77 12.22 16 26 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 27 H 0.13 4.90 7.60 -2.91 -0.02 4.88 16 28 H 0.43 8.98 8.96 -96.74 -0.87 8.11 16 29 H 0.18 7.55 4.19 -2.91 -0.01 7.54 16 30 H 0.24 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.11 4.95 7.16 -2.91 -0.02 4.93 16 32 H 0.11 5.81 6.16 -2.91 -0.02 5.80 16 Total: -1.00 -69.48 291.59 -1.87 -71.34 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: -1.57 Total: 34.39 kcal Atomic # 6 Polarization: -72.40 SS G_CDS: 3.58 Total: -68.81 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -1.21 Total: -89.20 kcal Atomic # 8 Polarization: -81.56 SS G_CDS: -4.38 Total: -85.94 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.78 kcal Atomic # 16 Polarization: 101.75 SS G_CDS: -0.32 Total: 101.44 kcal Total: -69.48 -1.87 -71.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.732 kcal (2) G-P(sol) polarization free energy of solvation -69.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds