Wall clock time and date at job start Tue Mar 31 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86796 * 120.00612 * 2 1 4 4 H 1.48503 * 109.47068 * 270.00281 * 3 2 1 5 5 H 1.48505 * 109.47031 * 29.99693 * 3 2 1 6 6 H 1.48496 * 109.47471 * 150.00101 * 3 2 1 7 7 C 1.38808 * 119.99447 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00326 * 0.02562 * 7 2 1 9 9 S 1.76195 * 119.99692 * 179.97438 * 7 2 1 10 10 C 1.80999 * 100.00036 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47360 * 180.02562 * 10 9 7 12 12 O 1.20827 * 120.00210 * 359.97438 * 11 10 9 13 13 O 1.34229 * 120.00043 * 180.02562 * 11 10 9 14 14 C 1.45206 * 116.99967 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.46814 * 179.97438 * 14 13 11 16 16 C 1.38897 * 119.62884 * 269.93768 * 15 14 13 17 17 C 1.36667 * 120.58214 * 180.02562 * 16 15 14 18 18 C 1.39085 * 119.80466 * 0.03996 * 17 16 15 19 19 N 1.37463 * 134.01266 * 179.97438 * 18 17 16 20 20 H 0.96999 * 126.75183 * 0.02562 * 19 18 17 21 21 N 1.40277 * 106.48690 * 180.02562 * 19 18 17 22 22 N 1.28645 * 109.43103 * 359.97438 * 21 19 18 23 23 C 1.34800 * 110.31550 * 0.02562 * 22 21 19 24 24 C 1.36418 * 119.61696 * 90.00748 * 15 14 13 25 25 H 0.97000 * 119.99655 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46814 * 59.99826 * 10 9 7 27 27 H 1.08997 * 109.47170 * 300.00138 * 10 9 7 28 28 H 1.09008 * 109.47048 * 60.00313 * 14 13 11 29 29 H 1.08991 * 109.47118 * 299.99517 * 14 13 11 30 30 H 1.08004 * 119.70972 * 0.06912 * 16 15 14 31 31 H 1.07995 * 120.09647 * 180.32023 * 17 16 15 32 32 H 1.07997 * 120.10230 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4480 2.6527 0.7000 6 1 3.5480 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7722 -1.2023 -0.0001 10 6 4.0864 -2.9848 0.0001 11 6 5.5728 -3.2328 0.0002 12 8 6.3410 -2.3002 -0.0003 13 8 6.0434 -4.4899 -0.0001 14 6 7.4862 -4.6537 -0.0005 15 6 7.8251 -6.1221 -0.0002 16 6 7.9812 -6.7906 1.2073 17 6 8.2889 -8.1219 1.2304 18 6 8.4485 -8.8154 0.0353 19 7 8.7502 -10.1190 -0.2796 20 1 8.9179 -10.8428 0.3440 21 7 8.7676 -10.1965 -1.6801 22 7 8.4992 -9.0402 -2.1760 23 6 8.2924 -8.1446 -1.1900 24 6 7.9764 -6.7794 -1.1860 25 1 -0.4849 0.8401 -0.0004 26 1 3.6431 -3.4319 -0.8896 27 1 3.6438 -3.4316 0.8903 28 1 7.9055 -4.1842 0.8895 29 1 7.9049 -4.1841 -0.8905 30 1 7.8575 -6.2536 2.1363 31 1 8.4034 -8.6350 2.1737 32 1 7.8534 -6.2491 -2.1187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105563433.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:19 Heat of formation + Delta-G solvation = 24.231702 kcal Electronic energy + Delta-G solvation = -19215.882143 eV Core-core repulsion = 15884.011808 eV Total energy + Delta-G solvation = -3331.870335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.51645 -40.25230 -38.40212 -36.18887 -34.09966 -32.50327 -31.74208 -30.90294 -29.81944 -26.61901 -25.67578 -24.43550 -22.85028 -22.14027 -21.12270 -18.65146 -18.11863 -17.87945 -17.29629 -16.63740 -16.06409 -16.00937 -15.54715 -15.04128 -14.65587 -14.44057 -14.12719 -13.62151 -13.03503 -12.84077 -12.78188 -12.67733 -12.37042 -12.14376 -11.95560 -11.64415 -11.34210 -11.22570 -11.06283 -10.75837 -10.65048 -10.25759 -9.89282 -9.29092 -9.06656 -8.87611 -8.63330 -7.03874 -6.34605 -4.09042 0.03679 0.71030 1.79266 1.95869 2.40542 2.49010 2.97659 3.28054 3.32893 3.44280 3.53488 3.65984 4.09314 4.26768 4.31835 4.39247 4.52794 4.68635 4.71213 4.87639 5.04184 5.08711 5.12143 5.38834 5.43175 5.55092 5.63985 5.70315 5.94431 6.00491 6.13442 6.45551 6.50331 7.54591 7.88221 7.99048 8.37146 9.10391 10.74445 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.041038 B = 0.002590 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.129455 B =10809.471739 C =10984.753922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.097 3.903 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.092 0.908 9 S -0.140 6.140 10 C -0.100 4.100 11 C 0.479 3.521 12 O -0.489 6.489 13 O -0.354 6.354 14 C 0.109 3.891 15 C -0.105 4.105 16 C -0.039 4.039 17 C -0.128 4.128 18 C 0.098 3.902 19 N -0.499 5.499 20 H 0.448 0.552 21 N -0.006 5.006 22 N -0.209 5.209 23 C -0.021 4.021 24 C -0.004 4.004 25 H 0.272 0.728 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.354 -17.773 3.454 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.110 0.890 9 S 0.086 5.914 10 C -0.248 4.248 11 C 0.321 3.679 12 O -0.375 6.375 13 O -0.272 6.272 14 C 0.035 3.965 15 C -0.108 4.108 16 C -0.061 4.061 17 C -0.150 4.150 18 C -0.025 4.025 19 N -0.222 5.222 20 H 0.295 0.705 21 N 0.013 4.987 22 N -0.088 5.088 23 C -0.145 4.145 24 C -0.027 4.027 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 19.375 -17.419 2.168 26.144 hybrid contribution -0.722 -0.244 1.250 1.464 sum 18.654 -17.663 3.418 25.915 Atomic orbital electron populations 1.69934 1.05889 1.27884 1.47591 1.24707 0.94466 0.98966 0.93098 0.86743 0.81838 0.83296 0.79998 1.19118 1.19816 1.15938 1.22261 0.87677 0.97760 1.59307 0.89042 1.84796 1.10110 0.98881 1.97567 1.23018 0.89795 1.04519 1.07441 1.23283 0.91985 0.80299 0.72358 1.90675 1.58813 1.43706 1.44260 1.86591 1.24639 1.31191 1.84769 1.21716 0.79021 0.91646 1.04101 1.19100 1.03567 0.95339 0.92833 1.20841 0.93759 0.93157 0.98327 1.19817 1.05858 0.94337 0.94965 1.19462 1.00393 0.85599 0.97011 1.47780 1.57750 1.08769 1.07857 0.70531 1.81630 1.15598 1.15329 0.86146 1.74618 1.11071 0.96578 1.26582 1.19759 1.10554 0.96007 0.88180 1.20177 0.93499 0.89861 0.99138 0.91807 0.87119 0.87113 0.89742 0.89814 0.83872 0.84464 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.93 13.97 55.49 0.78 -25.15 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.09 27.74 -169.99 -4.71 16.38 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 7 C -0.52 -14.61 10.04 30.94 0.31 -14.30 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.14 -3.38 18.55 -107.50 -1.99 -5.38 16 10 C -0.10 -1.87 6.27 36.00 0.23 -1.64 16 11 C 0.48 8.16 7.97 36.00 0.29 8.45 16 12 O -0.49 -9.51 15.61 -18.75 -0.29 -9.80 16 13 O -0.35 -4.89 10.20 -39.25 -0.40 -5.29 16 14 C 0.11 1.15 5.56 36.01 0.20 1.35 16 15 C -0.11 -0.95 5.48 -105.03 -0.58 -1.52 16 16 C -0.04 -0.28 9.61 -39.91 -0.38 -0.66 16 17 C -0.13 -0.83 10.03 -39.84 -0.40 -1.23 16 18 C 0.10 0.84 7.36 -84.15 -0.62 0.22 16 19 N -0.50 -3.72 7.56 32.35 0.24 -3.48 16 20 H 0.45 1.52 8.96 -182.46 -1.64 -0.11 16 21 N -0.01 -0.06 13.83 60.35 0.83 0.77 16 22 N -0.21 -2.54 12.36 32.07 0.40 -2.14 16 23 C -0.02 -0.22 7.26 -84.98 -0.62 -0.84 16 24 C 0.00 -0.04 9.67 -39.53 -0.38 -0.43 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.11 1.95 8.14 -51.91 -0.42 1.53 16 27 H 0.11 1.93 8.14 -51.92 -0.42 1.50 16 28 H 0.08 0.80 8.07 -51.92 -0.42 0.38 16 29 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 30 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 307.43 15.07 4.63 4.63 Total: -1.00 -33.89 307.43 -6.73 -40.62 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -4.16 Total: -3.23 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.05 Total: -7.94 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 2.25 Total: -29.99 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.69 Total: -15.09 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.71 Total: 16.38 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.89 -6.73 -40.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105563433.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.854 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds