Wall clock time and date at job start Tue Mar 31 2020 06:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86796 * 120.00612 * 2 1 4 4 H 1.48503 * 109.47068 * 270.00281 * 3 2 1 5 5 H 1.48505 * 109.47031 * 29.99693 * 3 2 1 6 6 H 1.48496 * 109.47471 * 150.00101 * 3 2 1 7 7 C 1.38808 * 119.99447 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00326 * 0.02562 * 7 2 1 9 9 S 1.76195 * 119.99692 * 179.97438 * 7 2 1 10 10 C 1.80999 * 100.00036 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47360 * 180.02562 * 10 9 7 12 12 O 1.20827 * 120.00210 * 359.97438 * 11 10 9 13 13 O 1.34229 * 120.00043 * 180.02562 * 11 10 9 14 14 C 1.45206 * 116.99967 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.46814 * 179.97438 * 14 13 11 16 16 C 1.38897 * 119.62884 * 269.93768 * 15 14 13 17 17 C 1.36667 * 120.58214 * 180.02562 * 16 15 14 18 18 C 1.39085 * 119.80466 * 0.03996 * 17 16 15 19 19 N 1.37463 * 134.01266 * 179.97438 * 18 17 16 20 20 H 0.96999 * 126.75183 * 0.02562 * 19 18 17 21 21 N 1.40277 * 106.48690 * 180.02562 * 19 18 17 22 22 N 1.28645 * 109.43103 * 359.97438 * 21 19 18 23 23 C 1.34800 * 110.31550 * 0.02562 * 22 21 19 24 24 C 1.36418 * 119.61696 * 90.00748 * 15 14 13 25 25 H 0.97000 * 119.99655 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46814 * 59.99826 * 10 9 7 27 27 H 1.08997 * 109.47170 * 300.00138 * 10 9 7 28 28 H 1.09008 * 109.47048 * 60.00313 * 14 13 11 29 29 H 1.08991 * 109.47118 * 299.99517 * 14 13 11 30 30 H 1.08004 * 119.70972 * 0.06912 * 16 15 14 31 31 H 1.07995 * 120.09647 * 180.32023 * 17 16 15 32 32 H 1.07997 * 120.10230 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4480 2.6527 0.7000 6 1 3.5480 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7722 -1.2023 -0.0001 10 6 4.0864 -2.9848 0.0001 11 6 5.5728 -3.2328 0.0002 12 8 6.3410 -2.3002 -0.0003 13 8 6.0434 -4.4899 -0.0001 14 6 7.4862 -4.6537 -0.0005 15 6 7.8251 -6.1221 -0.0002 16 6 7.9812 -6.7906 1.2073 17 6 8.2889 -8.1219 1.2304 18 6 8.4485 -8.8154 0.0353 19 7 8.7502 -10.1190 -0.2796 20 1 8.9179 -10.8428 0.3440 21 7 8.7676 -10.1965 -1.6801 22 7 8.4992 -9.0402 -2.1760 23 6 8.2924 -8.1446 -1.1900 24 6 7.9764 -6.7794 -1.1860 25 1 -0.4849 0.8401 -0.0004 26 1 3.6431 -3.4319 -0.8896 27 1 3.6438 -3.4316 0.8903 28 1 7.9055 -4.1842 0.8895 29 1 7.9049 -4.1841 -0.8905 30 1 7.8575 -6.2536 2.1363 31 1 8.4034 -8.6350 2.1737 32 1 7.8534 -6.2491 -2.1187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105563433.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:18 Heat of formation + Delta-G solvation = 1.331520 kcal Electronic energy + Delta-G solvation = -19216.875170 eV Core-core repulsion = 15884.011808 eV Total energy + Delta-G solvation = -3332.863362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.20959 -41.49455 -39.16121 -37.37728 -34.79588 -34.66928 -32.59794 -31.53684 -31.17786 -27.91337 -27.41359 -25.10787 -23.50718 -23.00381 -22.30185 -19.93701 -19.30432 -18.75430 -18.61071 -17.71796 -17.27472 -17.02042 -16.76340 -16.44571 -15.95132 -15.40750 -15.15103 -14.90062 -14.74968 -14.07637 -13.70105 -13.42286 -13.34250 -13.30793 -13.05144 -13.00110 -12.77372 -12.68365 -12.35118 -11.93586 -11.86664 -11.68561 -11.59683 -11.16279 -10.59622 -9.98183 -9.51729 -9.03255 -8.50603 -6.23604 -0.63014 0.00644 0.86294 1.10048 1.13690 1.34304 1.38672 1.42348 1.52391 1.89860 2.25595 2.55079 2.71352 2.87719 2.96197 3.41234 3.62452 3.73065 3.91141 3.95069 4.05638 4.15359 4.20523 4.43012 4.47935 4.54637 4.82151 4.91923 5.08931 5.27786 5.36139 5.54160 5.71602 6.00255 6.13708 6.68836 6.81715 6.93496 8.61737 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.041038 B = 0.002590 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.129455 B =10809.471739 C =10984.753922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.231 1.231 7 C -0.531 4.531 8 H 0.064 0.936 9 S -0.160 6.160 10 C -0.092 4.092 11 C 0.493 3.507 12 O -0.515 6.515 13 O -0.347 6.347 14 C 0.105 3.895 15 C -0.104 4.104 16 C -0.040 4.040 17 C -0.113 4.113 18 C 0.096 3.904 19 N -0.478 5.478 20 H 0.465 0.535 21 N -0.026 5.026 22 N -0.243 5.243 23 C -0.046 4.046 24 C -0.020 4.020 25 H 0.277 0.723 26 H 0.122 0.878 27 H 0.127 0.873 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.170 0.830 31 H 0.176 0.824 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.931 -18.329 5.066 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.155 1.155 7 C -0.679 4.679 8 H 0.082 0.918 9 S 0.066 5.934 10 C -0.240 4.240 11 C 0.336 3.664 12 O -0.403 6.403 13 O -0.264 6.264 14 C 0.032 3.968 15 C -0.108 4.108 16 C -0.062 4.062 17 C -0.135 4.135 18 C -0.028 4.028 19 N -0.204 5.204 20 H 0.316 0.684 21 N -0.007 5.007 22 N -0.122 5.122 23 C -0.170 4.170 24 C -0.042 4.042 25 H 0.087 0.913 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.187 0.813 31 H 0.193 0.807 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 20.965 -18.032 3.782 27.911 hybrid contribution -1.150 -0.285 0.789 1.423 sum 19.815 -18.317 4.571 27.369 Atomic orbital electron populations 1.70020 1.07410 1.29121 1.48841 1.25589 0.95286 1.02383 0.92795 0.85863 0.80812 0.79409 0.80270 1.18698 1.18453 1.15501 1.22428 0.89988 0.96846 1.58626 0.91768 1.84602 1.06830 1.04283 1.97679 1.22950 0.91872 1.00309 1.08895 1.22730 0.90877 0.80978 0.71853 1.90672 1.59188 1.44726 1.45742 1.86556 1.27028 1.28891 1.83944 1.22013 0.76760 0.92952 1.05094 1.19054 1.03787 0.94461 0.93463 1.21164 0.93017 0.93548 0.98476 1.20217 1.03756 0.93995 0.95519 1.19749 1.00173 0.85709 0.97127 1.47748 1.56275 1.09150 1.07190 0.68401 1.81540 1.16324 1.15155 0.87698 1.74584 1.12469 0.97288 1.27818 1.20041 1.11533 0.96504 0.88967 1.20249 0.94420 0.89843 0.99669 0.91306 0.85959 0.85529 0.88159 0.89601 0.81258 0.80686 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.77 13.97 21.65 0.30 -54.47 16 2 C 0.05 2.58 5.50 84.86 0.47 3.04 16 3 Si 0.91 43.26 27.74 68.60 1.90 45.16 16 4 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.23 -10.71 6.74 99.48 0.67 -10.04 16 7 C -0.53 -29.94 10.04 67.96 0.68 -29.25 16 8 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 9 S -0.16 -7.64 18.55 -56.49 -1.05 -8.69 16 10 C -0.09 -3.32 6.27 71.23 0.45 -2.87 16 11 C 0.49 15.88 7.97 71.23 0.57 16.45 16 12 O -0.52 -19.19 15.61 21.96 0.34 -18.85 16 13 O -0.35 -8.80 10.20 -51.40 -0.52 -9.33 16 14 C 0.10 1.97 5.56 71.24 0.40 2.37 16 15 C -0.10 -1.66 5.48 -20.13 -0.11 -1.77 16 16 C -0.04 -0.44 9.61 22.06 0.21 -0.22 16 17 C -0.11 -1.04 10.03 22.11 0.22 -0.82 16 18 C 0.10 1.44 7.36 39.03 0.29 1.73 16 19 N -0.48 -6.27 7.56 -51.57 -0.39 -6.66 16 20 H 0.47 2.05 8.96 -213.21 -1.91 0.13 16 21 N -0.03 -0.55 13.83 37.02 0.51 -0.04 16 22 N -0.24 -5.94 12.36 -52.44 -0.65 -6.59 16 23 C -0.05 -0.95 7.26 39.71 0.29 -0.66 16 24 C -0.02 -0.37 9.67 22.30 0.22 -0.15 16 25 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 27 H 0.13 4.19 8.14 -2.40 -0.02 4.17 16 28 H 0.10 1.61 8.07 -2.38 -0.02 1.59 16 29 H 0.09 1.60 8.06 -2.39 -0.02 1.58 16 30 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 31 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 32 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -73.67 307.43 3.36 -70.31 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -0.77 Total: 1.30 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 3.67 Total: -12.16 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -0.22 Total: -67.75 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.18 Total: -28.18 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.90 Total: 45.16 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -1.05 Total: -8.69 kcal Total: -73.67 3.36 -70.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105563433.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.644 kcal (2) G-P(sol) polarization free energy of solvation -73.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds