Wall clock time and date at job start Tue Mar 31 2020 06:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47539 * 2 1 4 4 C 1.50709 * 109.46596 * 119.99605 * 2 1 3 5 5 H 1.07994 * 119.99747 * 120.00478 * 4 2 1 6 6 C 1.37878 * 120.00103 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99686 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99933 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47398 * 60.00068 * 8 6 4 10 10 H 1.48495 * 109.46947 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46969 * 299.99879 * 8 6 4 12 12 O 1.45198 * 109.47406 * 239.99377 * 2 1 3 13 13 C 1.34807 * 116.99491 * 90.00589 * 12 2 1 14 14 O 1.21557 * 120.00216 * 359.97438 * 13 12 2 15 15 C 1.47146 * 119.99536 * 180.02562 * 13 12 2 16 16 C 1.36255 * 122.55034 * 179.97438 * 15 13 12 17 17 S 1.70998 * 109.06206 * 179.97438 * 16 15 13 18 18 C 1.75972 * 90.66597 * 0.02562 * 17 16 15 19 19 C 1.47132 * 125.22859 * 179.97438 * 18 17 16 20 20 C 1.36244 * 125.96084 * 359.97125 * 19 18 17 21 21 C 1.40763 * 106.72311 * 180.02562 * 20 19 18 22 22 C 1.34840 * 107.07621 * 0.02562 * 21 20 19 23 23 O 1.34244 * 108.71355 * 359.73036 * 22 21 20 24 24 N 1.30043 * 109.54035 * 359.75669 * 18 17 16 25 25 H 1.09003 * 109.46532 * 60.00478 * 1 2 3 26 26 H 1.09000 * 109.47539 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47567 * 300.00393 * 1 2 3 28 28 H 0.97008 * 119.99725 * 179.97438 * 7 6 4 29 29 H 1.07994 * 125.46947 * 0.02562 * 16 15 13 30 30 H 1.07999 * 126.63921 * 359.97438 * 20 19 18 31 31 H 1.08005 * 126.45897 * 180.02562 * 21 20 19 32 32 H 1.07991 * 125.64030 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8304 2.6033 8 14 2.3222 -1.1194 4.0081 9 1 3.8071 -1.1189 4.0081 10 1 1.8265 -0.4197 5.2205 11 1 1.8276 -2.5196 4.0084 12 8 2.0140 -0.6846 -1.1854 13 6 2.2181 0.0671 -2.2857 14 8 1.9971 1.2620 -2.2551 15 6 2.7075 -0.5591 -3.5241 16 6 2.9311 0.1505 -4.6656 17 16 3.4918 -0.9118 -5.8827 18 6 3.3916 -2.2718 -4.7705 19 6 3.7376 -3.6638 -5.0986 20 6 4.1853 -4.1141 -6.3040 21 6 4.3882 -5.5004 -6.1685 22 6 4.0583 -5.8270 -4.9026 23 8 3.6713 -4.7150 -4.2578 24 7 2.9690 -1.8568 -3.6128 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7087 1.1616 3.4844 29 1 2.7795 1.2133 -4.7827 30 1 4.3515 -3.5221 -7.1918 31 1 4.7415 -6.1752 -6.9343 32 1 4.1029 -6.8183 -4.4765 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113687604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:23 Heat of formation + Delta-G solvation = -45.097096 kcal Electronic energy + Delta-G solvation = -19971.378511 eV Core-core repulsion = 16604.209103 eV Total energy + Delta-G solvation = -3367.169409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.52765 -41.72662 -40.20565 -37.68147 -35.38030 -34.17537 -32.91219 -31.73537 -30.05311 -27.59641 -27.32211 -24.97663 -23.07379 -22.84700 -21.62071 -20.68689 -19.93550 -18.80703 -18.67864 -17.71433 -17.44857 -17.30953 -16.95648 -16.64930 -16.16211 -15.42220 -15.04316 -14.74182 -14.28919 -14.05763 -13.87436 -13.83588 -13.44531 -13.32648 -13.22247 -12.99215 -12.86309 -12.44827 -12.20275 -11.80448 -11.66784 -11.35866 -11.12676 -11.06614 -10.89473 -10.64696 -10.45507 -9.12744 -8.33010 -6.50236 -1.02475 -0.20866 0.15241 0.19230 1.11118 1.38198 1.43042 1.51025 1.66838 1.90770 2.06512 2.10256 2.37079 2.80269 2.97161 3.58940 3.91216 3.98630 4.00062 4.14087 4.40953 4.52585 4.71729 4.74801 4.75312 4.94130 5.00970 5.05004 5.40660 5.51659 5.53575 5.76869 5.95965 6.02000 6.29619 6.53401 6.82818 7.20582 8.75050 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.004015 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.219858 B = 6972.641633 C = 8227.446307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.215 3.785 3 H 0.014 0.986 4 C -0.554 4.554 5 H 0.060 0.940 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.985 3.015 9 H -0.269 1.269 10 H -0.270 1.270 11 H -0.265 1.265 12 O -0.348 6.348 13 C 0.524 3.476 14 O -0.535 6.535 15 C 0.003 3.997 16 C -0.215 4.215 17 S 0.368 5.632 18 C 0.076 3.924 19 C 0.004 3.996 20 C -0.147 4.147 21 C -0.213 4.213 22 C -0.018 4.018 23 O -0.189 6.189 24 N -0.454 5.454 25 H 0.025 0.975 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.273 0.727 29 H 0.217 0.783 30 H 0.187 0.813 31 H 0.192 0.808 32 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.744 -10.476 -23.201 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.162 3.838 3 H 0.032 0.968 4 C -0.591 4.591 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.807 3.193 9 H -0.194 1.194 10 H -0.195 1.195 11 H -0.190 1.190 12 O -0.264 6.264 13 C 0.367 3.633 14 O -0.427 6.427 15 C -0.132 4.132 16 C -0.357 4.357 17 S 0.627 5.373 18 C -0.198 4.198 19 C -0.049 4.049 20 C -0.170 4.170 21 C -0.232 4.232 22 C -0.088 4.088 23 O -0.085 6.085 24 N -0.169 5.169 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.234 0.766 30 H 0.204 0.796 31 H 0.209 0.791 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 7.692 -10.157 -23.285 26.543 hybrid contribution -0.403 0.481 2.064 2.157 sum 7.290 -9.676 -21.221 24.436 Atomic orbital electron populations 1.21987 0.96433 1.00305 1.01122 1.20500 0.92314 0.92258 0.78778 0.96828 1.21221 1.33808 1.13979 0.90084 0.92131 1.25827 0.94561 0.95656 1.01972 1.69996 1.36305 1.23436 1.25488 0.85211 0.78782 0.78603 0.76672 1.19383 1.19485 1.19000 1.86683 1.75560 1.43010 1.21107 1.20553 0.74059 0.84543 0.84140 1.90768 1.50600 1.16306 1.85000 1.19245 1.10832 0.89161 0.93975 1.27409 1.03170 1.08789 0.96326 1.82902 1.54372 0.91724 1.08309 1.24926 1.04950 0.97164 0.92790 1.19181 1.10992 0.84066 0.90650 1.22257 1.01630 0.96676 0.96432 1.22189 1.07361 0.95391 0.98253 1.25268 0.99760 0.90430 0.93309 1.84226 1.67146 1.16441 1.40660 1.67136 1.12977 1.13365 1.23434 0.95584 0.93953 0.89425 0.91724 0.76642 0.79582 0.79106 0.74255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.82 9.33 71.98 0.67 -7.15 16 2 C 0.21 12.86 2.56 29.85 0.08 12.94 16 3 H 0.01 0.91 7.16 -2.39 -0.02 0.89 16 4 C -0.55 -33.97 8.90 25.60 0.23 -33.74 16 5 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 6 C 0.02 1.15 5.30 84.65 0.45 1.59 16 7 N -0.91 -54.30 11.32 21.45 0.24 -54.06 16 8 Si 0.98 44.98 29.54 68.60 2.03 47.00 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 O -0.35 -19.63 9.78 -57.19 -0.56 -20.19 16 13 C 0.52 25.85 7.91 70.16 0.56 26.40 16 14 O -0.53 -27.57 15.94 19.65 0.31 -27.26 16 15 C 0.00 0.11 6.68 40.89 0.27 0.39 16 16 C -0.21 -5.71 10.62 67.36 0.72 -5.00 16 17 S 0.37 6.34 22.91 -56.49 -1.29 5.05 16 18 C 0.08 2.15 7.45 87.29 0.65 2.80 16 19 C 0.00 0.10 7.24 24.14 0.17 0.27 16 20 C -0.15 -2.27 10.62 22.42 0.24 -2.04 16 21 C -0.21 -2.66 10.88 22.11 0.24 -2.42 16 22 C -0.02 -0.29 12.08 67.04 0.81 0.52 16 23 O -0.19 -5.20 10.67 -6.60 -0.07 -5.27 16 24 N -0.45 -17.67 10.58 -179.51 -1.90 -19.57 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 26 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.09 5.08 6.07 -2.39 -0.01 5.06 16 28 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 29 H 0.22 4.77 8.01 -2.91 -0.02 4.75 16 30 H 0.19 1.50 8.06 -2.91 -0.02 1.47 16 31 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 32 H 0.24 1.80 8.06 -2.92 -0.02 1.78 16 Total: -1.00 -81.55 309.45 5.00 -76.55 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: 1.16 Total: 3.17 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 5.08 Total: -5.42 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.66 Total: -73.63 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -0.32 Total: -52.72 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 6.34 SS G_CDS: -1.29 Total: 5.05 kcal Total: -81.55 5.00 -76.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113687604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.450 kcal (2) G-P(sol) polarization free energy of solvation -81.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds