Wall clock time and date at job start Tue Mar 31 2020 06:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46784 * 2 1 4 4 C 1.50702 * 109.46732 * 240.00170 * 2 1 3 5 5 H 1.07997 * 120.00111 * 239.99494 * 4 2 1 6 6 C 1.37883 * 120.00043 * 60.00074 * 4 2 1 7 7 N 1.31514 * 119.99770 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99905 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47086 * 59.99962 * 8 6 4 10 10 H 1.48501 * 109.46972 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47027 * 299.99843 * 8 6 4 12 12 O 1.45192 * 109.47311 * 120.00366 * 2 1 3 13 13 C 1.34808 * 116.99736 * 270.00028 * 12 2 1 14 14 O 1.21548 * 120.00327 * 359.97438 * 13 12 2 15 15 C 1.47150 * 119.99780 * 180.02562 * 13 12 2 16 16 C 1.36257 * 122.55024 * 179.97438 * 15 13 12 17 17 S 1.70998 * 109.05789 * 180.02562 * 16 15 13 18 18 C 1.75958 * 90.67051 * 0.02562 * 17 16 15 19 19 C 1.47138 * 125.23075 * 179.97438 * 18 17 16 20 20 C 1.36238 * 125.95620 * 0.03216 * 19 18 17 21 21 C 1.40772 * 106.72272 * 179.97438 * 20 19 18 22 22 C 1.34844 * 107.06909 * 359.97438 * 21 20 19 23 23 O 1.34243 * 108.72333 * 0.24797 * 22 21 20 24 24 N 1.30044 * 109.53917 * 0.22974 * 18 17 16 25 25 H 1.08996 * 109.47395 * 59.99990 * 1 2 3 26 26 H 1.09001 * 109.47225 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46943 * 299.99419 * 1 2 3 28 28 H 0.97006 * 119.99470 * 180.02562 * 7 6 4 29 29 H 1.08002 * 125.46812 * 0.04934 * 16 15 13 30 30 H 1.08002 * 126.64073 * 0.02562 * 20 19 18 31 31 H 1.07998 * 126.46165 * 179.97438 * 21 20 19 32 32 H 1.08002 * 125.63423 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.8278 -2.5197 -4.0083 10 1 1.8266 -0.4198 -5.2205 11 1 3.8072 -1.1189 -4.0079 12 8 2.0140 -0.6845 1.1854 13 6 2.2180 0.0672 2.2857 14 8 1.9978 1.2622 2.2549 15 6 2.7084 -0.5588 3.5238 16 6 2.9330 0.1510 4.6651 17 16 3.4947 -0.9112 5.8818 18 6 3.3951 -2.2710 4.7696 19 6 3.7432 -3.6626 5.0970 20 6 4.1926 -4.1125 6.3019 21 6 4.3971 -5.4986 6.1661 22 6 4.0664 -5.8254 4.9003 23 8 3.6770 -4.7139 4.2561 24 7 2.9717 -1.8561 3.6121 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.7080 1.1609 -3.4844 29 1 2.7803 1.2137 4.7824 30 1 4.3588 -3.5204 7.1898 31 1 4.7519 -6.1731 6.9314 32 1 4.1120 -6.8166 4.4740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113687606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:26 Heat of formation + Delta-G solvation = -21.975244 kcal Electronic energy + Delta-G solvation = -19970.406333 eV Core-core repulsion = 16604.239563 eV Total energy + Delta-G solvation = -3366.166770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.75043 -40.20472 -38.66527 -35.73316 -33.39185 -33.21361 -31.90295 -29.61095 -29.07688 -26.14524 -25.26705 -23.70400 -22.13074 -21.27022 -20.40676 -19.29142 -18.72354 -17.61245 -16.81660 -16.36570 -16.13403 -15.88994 -15.33744 -15.24682 -14.46649 -14.03752 -13.77835 -13.33107 -13.18515 -12.99400 -12.75504 -12.21989 -12.14490 -11.84516 -11.21583 -11.02468 -10.81932 -10.39958 -10.36484 -10.26331 -10.10602 -10.08001 -9.89319 -9.55449 -9.48766 -8.88981 -8.45974 -8.26782 -6.14999 -4.21208 -0.00641 0.73554 1.27616 1.32265 2.06722 2.53918 2.83491 3.30338 3.32599 3.34870 3.47447 3.55155 3.89645 4.37338 4.63690 4.64087 4.84229 5.02277 5.17945 5.28102 5.45572 5.51291 5.68005 5.92151 6.11758 6.63700 6.77619 6.91412 6.91809 7.11335 7.34269 7.60737 7.73315 7.92235 8.15724 8.59349 8.89993 9.43592 10.92672 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.004015 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.534116 B = 6971.791666 C = 8227.040388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H 0.048 0.952 4 C -0.519 4.519 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.329 6.329 13 C 0.530 3.470 14 O -0.510 6.510 15 C 0.046 3.954 16 C -0.216 4.216 17 S 0.219 5.781 18 C 0.096 3.904 19 C 0.057 3.943 20 C -0.174 4.174 21 C -0.216 4.216 22 C -0.016 4.016 23 O -0.146 6.146 24 N -0.393 5.393 25 H 0.101 0.899 26 H 0.038 0.962 27 H 0.016 0.984 28 H 0.267 0.733 29 H 0.200 0.800 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -8.902 20.609 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.557 4.557 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.244 6.244 13 C 0.371 3.629 14 O -0.400 6.400 15 C -0.090 4.090 16 C -0.358 4.358 17 S 0.477 5.523 18 C -0.179 4.179 19 C 0.003 3.997 20 C -0.197 4.197 21 C -0.235 4.235 22 C -0.087 4.087 23 O -0.040 6.040 24 N -0.107 5.107 25 H 0.119 0.881 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.217 0.783 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.361 -8.590 20.645 23.248 hybrid contribution -0.075 0.072 -1.538 1.541 sum 6.286 -8.518 19.107 21.844 Atomic orbital electron populations 1.22171 0.97363 1.00294 1.01431 1.20754 0.91564 0.93961 0.77645 0.93401 1.20998 1.32470 1.13519 0.88737 0.91201 1.24878 0.94927 0.95104 0.99015 1.69892 1.36116 1.22617 1.24264 0.86307 0.79234 0.79571 0.80877 1.19887 1.21029 1.19965 1.86697 1.74792 1.42436 1.20469 1.19747 0.74920 0.84594 0.83660 1.90818 1.49288 1.15457 1.84474 1.19777 1.06436 0.88039 0.94737 1.26988 1.05356 1.07140 0.96282 1.83518 1.58493 0.96937 1.13370 1.24397 1.06184 0.94981 0.92364 1.18869 1.07183 0.84419 0.89205 1.21773 1.04951 0.95798 0.97135 1.21721 1.08223 0.95537 0.97982 1.24387 1.01305 0.90298 0.92661 1.84262 1.65843 1.15031 1.38852 1.67246 1.10157 1.13075 1.20257 0.88071 0.94283 0.96514 0.92358 0.78340 0.82713 0.82650 0.77359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.33 37.16 0.35 -3.75 16 2 C 0.21 6.01 2.57 -27.88 -0.07 5.94 16 3 H 0.05 1.46 7.16 -51.93 -0.37 1.08 16 4 C -0.52 -15.24 8.90 -34.44 -0.31 -15.54 16 5 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.85 11.32 55.43 0.63 -25.22 16 8 Si 0.91 21.73 29.54 -169.99 -5.02 16.70 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 O -0.33 -8.66 9.78 -40.79 -0.40 -9.06 16 13 C 0.53 12.26 7.91 34.35 0.27 12.53 16 14 O -0.51 -12.38 15.94 -19.30 -0.31 -12.69 16 15 C 0.05 0.85 6.68 -84.60 -0.57 0.29 16 16 C -0.22 -2.98 10.62 30.02 0.32 -2.66 16 17 S 0.22 2.24 22.91 -107.50 -2.46 -0.22 16 18 C 0.10 1.39 7.45 -14.70 -0.11 1.28 16 19 C 0.06 0.74 7.24 -36.69 -0.27 0.48 16 20 C -0.17 -1.64 10.62 -39.34 -0.42 -2.05 16 21 C -0.22 -1.74 10.88 -39.83 -0.43 -2.17 16 22 C -0.02 -0.14 12.08 29.53 0.36 0.21 16 23 O -0.15 -2.00 10.67 4.54 0.05 -1.95 16 24 N -0.39 -7.33 10.58 -8.09 -0.09 -7.42 16 25 H 0.10 2.81 6.07 -51.93 -0.32 2.49 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.20 2.33 8.01 -52.49 -0.42 1.91 16 30 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.21 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -34.36 309.45 -6.67 -41.03 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -2.77 Total: -2.07 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.97 Total: -3.77 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.54 Total: -32.64 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.66 Total: -23.70 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.46 Total: -0.22 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.36 -6.67 -41.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113687606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.055 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds