Wall clock time and date at job start Tue Mar 31 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47120 * 2 1 4 4 C 1.50697 * 109.47106 * 119.99593 * 2 1 3 5 5 H 1.07999 * 119.99930 * 119.99839 * 4 2 1 6 6 C 1.37881 * 120.00327 * 300.00386 * 4 2 1 7 7 N 1.31519 * 119.99511 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00074 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47029 * 59.99916 * 8 6 4 10 10 H 1.48506 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47210 * 299.99552 * 8 6 4 12 12 O 1.45199 * 109.47067 * 239.99702 * 2 1 3 13 13 C 1.34806 * 117.00156 * 89.99998 * 12 2 1 14 14 O 1.21561 * 120.00001 * 359.97438 * 13 12 2 15 15 C 1.47115 * 120.00410 * 179.97438 * 13 12 2 16 16 C 1.35149 * 122.49572 * 180.02562 * 15 13 12 17 17 S 1.70978 * 109.19969 * 179.97438 * 16 15 13 18 18 C 1.75971 * 90.67147 * 359.97438 * 17 16 15 19 19 C 1.47873 * 125.27716 * 179.97438 * 18 17 16 20 20 C 1.46857 * 127.14056 * 0.28574 * 19 18 17 21 21 C 1.34305 * 106.00839 * 180.15269 * 20 19 18 22 22 O 1.34179 * 109.04915 * 359.60458 * 21 20 19 23 23 C 1.33995 * 110.80409 * 0.26290 * 22 21 20 24 24 N 1.29840 * 109.44783 * 0.22849 * 18 17 16 25 25 H 1.09001 * 109.47415 * 60.00394 * 1 2 3 26 26 H 1.08998 * 109.47120 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47440 * 300.00330 * 1 2 3 28 28 H 0.96996 * 119.99462 * 180.02562 * 7 6 4 29 29 H 1.08010 * 125.40024 * 0.03368 * 16 15 13 30 30 H 1.07999 * 126.99945 * 0.04654 * 20 19 18 31 31 H 1.08002 * 125.47798 * 179.87384 * 21 20 19 32 32 H 1.08001 * 125.79295 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.8063 -1.1207 4.0082 10 1 1.8268 -0.4197 5.2205 11 1 1.8258 -2.5200 4.0078 12 8 2.0140 -0.6845 -1.1855 13 6 2.2180 0.0671 -2.2858 14 8 1.9969 1.2620 -2.2552 15 6 2.7082 -0.5587 -3.5237 16 6 2.9305 0.1464 -4.6551 17 16 3.4925 -0.9111 -5.8754 18 6 3.3949 -2.2748 -4.7676 19 6 3.7446 -3.6724 -5.1007 20 6 4.2352 -4.1809 -6.3881 21 6 4.4121 -5.5018 -6.2214 22 8 4.0852 -5.8321 -4.9627 23 6 3.6839 -4.7533 -4.2766 24 7 2.9632 -1.8645 -3.6139 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7094 1.1619 3.4843 29 1 2.7783 1.2096 -4.7698 30 1 4.4153 -3.6095 -7.2866 31 1 4.7652 -6.1873 -6.9777 32 1 3.3665 -4.7433 -3.2443 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113688709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:28 Heat of formation + Delta-G solvation = -27.160184 kcal Electronic energy + Delta-G solvation = -19919.361234 eV Core-core repulsion = 16552.969629 eV Total energy + Delta-G solvation = -3366.391606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.64395 -40.14413 -38.61936 -35.72277 -33.65394 -33.21030 -30.91964 -29.61594 -29.22026 -26.14361 -25.27957 -23.92533 -21.93514 -21.26161 -20.16040 -19.09632 -18.71927 -17.61765 -16.78688 -16.25151 -16.08137 -15.76392 -15.33811 -15.22129 -14.54641 -14.06993 -14.03959 -13.41430 -13.19963 -12.99699 -12.46123 -12.19783 -12.07315 -11.83461 -11.22422 -11.03290 -10.83028 -10.64393 -10.37235 -10.26766 -9.98873 -9.83515 -9.67111 -9.53232 -9.24788 -8.89532 -8.47161 -8.37280 -6.15849 -4.22276 0.24675 1.06011 1.45448 1.48233 1.80371 2.66504 2.78869 3.29185 3.31861 3.34298 3.50877 3.61106 3.92585 4.36728 4.54881 4.65626 4.94324 5.13043 5.17171 5.22397 5.45428 5.49357 5.84557 5.98062 6.04862 6.64026 6.79386 6.91016 6.91762 7.12044 7.41923 7.60751 7.73056 7.92307 8.15201 8.60561 8.89288 9.42616 10.91834 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.003965 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.290842 B = 7060.323947 C = 8325.537538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H 0.048 0.952 4 C -0.519 4.519 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.331 6.331 13 C 0.530 3.470 14 O -0.512 6.512 15 C 0.046 3.954 16 C -0.219 4.219 17 S 0.168 5.832 18 C 0.127 3.873 19 C -0.138 4.138 20 C -0.198 4.198 21 C -0.031 4.031 22 O -0.176 6.176 23 C 0.043 3.957 24 N -0.415 5.415 25 H 0.016 0.984 26 H 0.038 0.962 27 H 0.100 0.900 28 H 0.267 0.733 29 H 0.194 0.806 30 H 0.156 0.844 31 H 0.208 0.792 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.333 -9.362 -20.003 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.557 4.557 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.740 3.260 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.245 6.245 13 C 0.371 3.629 14 O -0.402 6.402 15 C -0.088 4.088 16 C -0.360 4.360 17 S 0.426 5.574 18 C -0.150 4.150 19 C -0.143 4.143 20 C -0.218 4.218 21 C -0.098 4.098 22 O -0.071 6.071 23 C -0.031 4.031 24 N -0.130 5.130 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.119 0.881 28 H 0.076 0.924 29 H 0.211 0.789 30 H 0.174 0.826 31 H 0.224 0.776 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 6.385 -9.340 -20.274 23.217 hybrid contribution -0.151 0.556 1.523 1.628 sum 6.234 -8.784 -18.752 21.625 Atomic orbital electron populations 1.22167 0.97406 1.00254 1.01415 1.20734 0.91526 0.93969 0.77691 0.93471 1.20986 1.32476 1.13513 0.88746 0.91226 1.24883 0.94929 0.95109 0.99028 1.69893 1.36119 1.22569 1.24273 0.86310 0.79220 0.79555 0.80915 1.19978 1.21041 1.19890 1.86678 1.74908 1.42465 1.20495 1.19803 0.74849 0.84609 0.83688 1.90819 1.49306 1.15575 1.84510 1.19577 1.06420 0.88216 0.94567 1.26482 1.06112 1.06954 0.96416 1.83609 1.59734 0.98921 1.15114 1.24879 1.02787 0.96286 0.91083 1.19031 1.10751 0.89344 0.95216 1.22744 1.06527 0.94870 0.97677 1.23887 1.04339 0.96315 0.85209 1.83939 1.64860 1.35912 1.22405 1.24523 0.97979 0.82495 0.98093 1.67369 1.12225 1.12850 1.20550 0.96528 0.94305 0.88124 0.92352 0.78910 0.82647 0.77566 0.76308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.33 37.16 0.35 -3.71 16 2 C 0.21 5.95 2.56 -27.88 -0.07 5.88 16 3 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 4 C -0.52 -15.01 8.90 -34.44 -0.31 -15.31 16 5 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.69 11.32 55.43 0.63 -25.06 16 8 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 O -0.33 -8.51 9.78 -40.78 -0.40 -8.91 16 13 C 0.53 12.19 7.91 34.33 0.27 12.47 16 14 O -0.51 -12.53 15.92 -19.31 -0.31 -12.83 16 15 C 0.05 0.85 6.66 -84.71 -0.56 0.29 16 16 C -0.22 -3.17 10.56 29.63 0.31 -2.86 16 17 S 0.17 1.86 23.06 -107.50 -2.48 -0.62 16 18 C 0.13 1.77 7.46 -14.45 -0.11 1.66 16 19 C -0.14 -1.61 6.32 -103.25 -0.65 -2.27 16 20 C -0.20 -1.67 11.04 -37.48 -0.41 -2.08 16 21 C -0.03 -0.22 12.04 29.34 0.35 0.13 16 22 O -0.18 -1.69 10.54 6.87 0.07 -1.62 16 23 C 0.04 0.46 12.05 29.95 0.36 0.82 16 24 N -0.42 -7.34 10.56 -8.03 -0.08 -7.43 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.10 2.78 6.07 -51.93 -0.32 2.46 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.19 2.48 7.99 -52.48 -0.42 2.06 16 30 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.21 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.22 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -33.37 309.97 -6.25 -39.62 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -2.77 Total: -0.94 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -0.57 Total: -3.33 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.54 Total: -32.49 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.63 Total: -23.36 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.48 Total: -0.62 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.37 -6.25 -39.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.465 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds