Wall clock time and date at job start Tue Mar 31 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47120 * 2 1 4 4 C 1.50697 * 109.47106 * 119.99593 * 2 1 3 5 5 H 1.07999 * 119.99930 * 119.99839 * 4 2 1 6 6 C 1.37881 * 120.00327 * 300.00386 * 4 2 1 7 7 N 1.31519 * 119.99511 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00074 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47029 * 59.99916 * 8 6 4 10 10 H 1.48506 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47210 * 299.99552 * 8 6 4 12 12 O 1.45199 * 109.47067 * 239.99702 * 2 1 3 13 13 C 1.34806 * 117.00156 * 89.99998 * 12 2 1 14 14 O 1.21561 * 120.00001 * 359.97438 * 13 12 2 15 15 C 1.47115 * 120.00410 * 179.97438 * 13 12 2 16 16 C 1.35149 * 122.49572 * 180.02562 * 15 13 12 17 17 S 1.70978 * 109.19969 * 179.97438 * 16 15 13 18 18 C 1.75971 * 90.67147 * 359.97438 * 17 16 15 19 19 C 1.47873 * 125.27716 * 179.97438 * 18 17 16 20 20 C 1.46857 * 127.14056 * 0.28574 * 19 18 17 21 21 C 1.34305 * 106.00839 * 180.15269 * 20 19 18 22 22 O 1.34179 * 109.04915 * 359.60458 * 21 20 19 23 23 C 1.33995 * 110.80409 * 0.26290 * 22 21 20 24 24 N 1.29840 * 109.44783 * 0.22849 * 18 17 16 25 25 H 1.09001 * 109.47415 * 60.00394 * 1 2 3 26 26 H 1.08998 * 109.47120 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47440 * 300.00330 * 1 2 3 28 28 H 0.96996 * 119.99462 * 180.02562 * 7 6 4 29 29 H 1.08010 * 125.40024 * 0.03368 * 16 15 13 30 30 H 1.07999 * 126.99945 * 0.04654 * 20 19 18 31 31 H 1.08002 * 125.47798 * 179.87384 * 21 20 19 32 32 H 1.08001 * 125.79295 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.8063 -1.1207 4.0082 10 1 1.8268 -0.4197 5.2205 11 1 1.8258 -2.5200 4.0078 12 8 2.0140 -0.6845 -1.1855 13 6 2.2180 0.0671 -2.2858 14 8 1.9969 1.2620 -2.2552 15 6 2.7082 -0.5587 -3.5237 16 6 2.9305 0.1464 -4.6551 17 16 3.4925 -0.9111 -5.8754 18 6 3.3949 -2.2748 -4.7676 19 6 3.7446 -3.6724 -5.1007 20 6 4.2352 -4.1809 -6.3881 21 6 4.4121 -5.5018 -6.2214 22 8 4.0852 -5.8321 -4.9627 23 6 3.6839 -4.7533 -4.2766 24 7 2.9632 -1.8645 -3.6139 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7094 1.1619 3.4843 29 1 2.7783 1.2096 -4.7698 30 1 4.4153 -3.6095 -7.2866 31 1 4.7652 -6.1873 -6.9777 32 1 3.3665 -4.7433 -3.2443 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113688709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:28 Heat of formation + Delta-G solvation = -48.782276 kcal Electronic energy + Delta-G solvation = -19920.298839 eV Core-core repulsion = 16552.969629 eV Total energy + Delta-G solvation = -3367.329210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.35120 -41.69691 -40.15615 -37.66534 -35.36124 -34.49243 -31.98402 -31.59062 -30.14124 -27.58713 -27.33171 -25.24714 -23.06748 -22.60682 -21.51399 -20.36030 -19.93066 -18.78134 -18.65613 -17.68938 -17.40143 -17.12015 -16.89939 -16.57765 -16.03263 -15.45873 -15.19641 -14.84839 -14.31508 -14.20897 -13.93900 -13.79855 -13.30960 -13.22178 -13.18522 -12.96588 -12.84477 -12.42901 -12.19278 -11.77262 -11.65973 -11.62470 -11.06104 -10.98939 -10.64609 -10.62286 -10.02045 -9.31226 -8.31371 -6.48534 -0.85827 0.03831 0.31377 0.31994 1.02851 1.39993 1.44623 1.52586 1.61892 1.93056 2.12420 2.14994 2.38617 2.81483 2.99094 3.64111 3.84739 3.99087 4.02787 4.13759 4.44123 4.54299 4.70129 4.73470 4.77921 4.85609 5.06752 5.11460 5.42351 5.42737 5.55347 5.79264 5.98143 6.08408 6.30898 6.55650 6.84942 7.22367 8.76696 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.003965 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.290842 B = 7060.323947 C = 8325.537538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.215 3.785 3 H 0.011 0.989 4 C -0.551 4.551 5 H 0.064 0.936 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.985 3.015 9 H -0.269 1.269 10 H -0.273 1.273 11 H -0.264 1.264 12 O -0.345 6.345 13 C 0.524 3.476 14 O -0.539 6.539 15 C 0.006 3.994 16 C -0.218 4.218 17 S 0.295 5.705 18 C 0.111 3.889 19 C -0.163 4.163 20 C -0.205 4.205 21 C -0.016 4.016 22 O -0.183 6.183 23 C 0.030 3.970 24 N -0.459 5.459 25 H 0.023 0.977 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.273 0.727 29 H 0.207 0.793 30 H 0.182 0.818 31 H 0.253 0.747 32 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.594 -10.918 -22.273 25.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.588 4.588 5 H 0.082 0.918 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.808 3.192 9 H -0.194 1.194 10 H -0.198 1.198 11 H -0.188 1.188 12 O -0.260 6.260 13 C 0.367 3.633 14 O -0.431 6.431 15 C -0.127 4.127 16 C -0.360 4.360 17 S 0.555 5.445 18 C -0.165 4.165 19 C -0.168 4.168 20 C -0.225 4.225 21 C -0.082 4.082 22 O -0.078 6.078 23 C -0.044 4.044 24 N -0.175 5.175 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.224 0.776 30 H 0.199 0.801 31 H 0.268 0.732 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 7.650 -10.904 -22.589 26.224 hybrid contribution -0.475 1.017 1.985 2.280 sum 7.175 -9.886 -20.604 23.953 Atomic orbital electron populations 1.21986 0.96506 1.00383 1.00997 1.20482 0.92253 0.92217 0.78875 0.97092 1.21227 1.33699 1.13995 0.89922 0.91774 1.25841 0.94589 0.95660 1.02046 1.70004 1.36411 1.23533 1.25436 0.85204 0.78767 0.78643 0.76617 1.19374 1.19785 1.18823 1.86664 1.75550 1.42831 1.20947 1.20580 0.73983 0.84522 0.84185 1.90773 1.50704 1.16563 1.85032 1.19103 1.10464 0.89476 0.93665 1.26878 1.04053 1.08404 0.96671 1.83119 1.56110 0.94580 1.10701 1.25307 1.01632 0.98347 0.91218 1.19319 1.11908 0.88441 0.97149 1.23046 1.06784 0.95522 0.97136 1.24808 1.02020 0.96819 0.84544 1.83955 1.64751 1.35471 1.23582 1.24519 0.98463 0.83078 0.98322 1.67276 1.14341 1.12635 1.23202 0.95754 0.93743 0.89566 0.91805 0.77619 0.80070 0.73162 0.76987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.71 9.33 71.98 0.67 -7.04 16 2 C 0.21 12.64 2.56 29.85 0.08 12.72 16 3 H 0.01 0.73 7.16 -2.39 -0.02 0.71 16 4 C -0.55 -33.04 8.90 25.60 0.23 -32.81 16 5 H 0.06 3.81 7.81 -2.91 -0.02 3.78 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.92 -53.94 11.32 21.45 0.24 -53.70 16 8 Si 0.99 44.21 29.54 68.60 2.03 46.24 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 12 O -0.34 -18.81 9.78 -57.18 -0.56 -19.37 16 13 C 0.52 25.45 7.91 70.15 0.55 26.01 16 14 O -0.54 -27.81 15.92 19.64 0.31 -27.50 16 15 C 0.01 0.24 6.66 40.53 0.27 0.51 16 16 C -0.22 -6.11 10.56 67.11 0.71 -5.40 16 17 S 0.29 5.62 23.06 -56.49 -1.30 4.31 16 18 C 0.11 2.99 7.46 87.54 0.65 3.65 16 19 C -0.16 -3.58 6.32 -18.98 -0.12 -3.70 16 20 C -0.20 -2.77 11.04 23.63 0.26 -2.51 16 21 C -0.02 -0.18 12.04 66.92 0.81 0.63 16 22 O -0.18 -3.18 10.54 1.65 0.02 -3.17 16 23 C 0.03 0.65 12.05 67.31 0.81 1.46 16 24 N -0.46 -16.62 10.56 -179.33 -1.89 -18.51 16 25 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.09 4.95 6.07 -2.39 -0.01 4.93 16 28 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.21 5.05 7.99 -2.91 -0.02 5.03 16 30 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.25 0.16 8.06 -2.91 -0.02 0.14 16 32 H 0.21 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -76.52 309.97 5.37 -71.15 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.16 Total: 5.53 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 5.37 Total: -4.97 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -1.65 Total: -72.22 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.23 Total: -50.04 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.30 Total: 4.31 kcal Total: -76.52 5.37 -71.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.368 kcal (2) G-P(sol) polarization free energy of solvation -76.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds