Wall clock time and date at job start Tue Mar 31 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46892 * 2 1 4 4 C 1.50701 * 109.47106 * 240.00145 * 2 1 3 5 5 H 1.08005 * 119.99608 * 274.99563 * 4 2 1 6 6 C 1.37874 * 120.00081 * 94.99717 * 4 2 1 7 7 N 1.31512 * 119.99839 * 184.91612 * 6 4 2 8 8 Si 1.86795 * 120.00027 * 4.90986 * 6 4 2 9 9 H 1.48505 * 109.47088 * 84.83425 * 8 6 4 10 10 H 1.48500 * 109.47277 * 204.83208 * 8 6 4 11 11 H 1.48501 * 109.47211 * 324.83910 * 8 6 4 12 12 O 1.45198 * 109.47074 * 119.99820 * 2 1 3 13 13 C 1.34810 * 117.00243 * 270.00334 * 12 2 1 14 14 O 1.21566 * 119.99711 * 359.97438 * 13 12 2 15 15 C 1.47108 * 120.00149 * 180.02562 * 13 12 2 16 16 C 1.35159 * 122.49173 * 180.02562 * 15 13 12 17 17 S 1.70986 * 109.19533 * 179.78647 * 16 15 13 18 18 C 1.75975 * 90.67347 * 0.29238 * 17 16 15 19 19 C 1.47871 * 125.27439 * 179.97438 * 18 17 16 20 20 C 1.46853 * 127.14440 * 359.92556 * 19 18 17 21 21 C 1.34302 * 106.01026 * 180.14209 * 20 19 18 22 22 O 1.34177 * 109.04982 * 359.64246 * 21 20 19 23 23 C 1.33999 * 110.80434 * 0.23967 * 22 21 20 24 24 N 1.29838 * 109.44772 * 359.69905 * 18 17 16 25 25 H 1.08997 * 109.47113 * 55.03546 * 1 2 3 26 26 H 1.09001 * 109.46658 * 175.03803 * 1 2 3 27 27 H 1.09002 * 109.47125 * 295.03212 * 1 2 3 28 28 H 0.96994 * 119.99843 * 179.97438 * 7 6 4 29 29 H 1.07993 * 125.40258 * 359.97438 * 16 15 13 30 30 H 1.07996 * 126.99633 * 0.04557 * 20 19 18 31 31 H 1.08001 * 125.47634 * 179.89754 * 21 20 19 32 32 H 1.07997 * 125.78732 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1356 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3581 7 7 2.7059 -0.6132 -3.4622 8 14 2.3133 1.8790 -2.3175 9 1 3.5989 2.3950 -1.7823 10 1 2.1055 2.3990 -3.6929 11 1 1.1984 2.3273 -1.4450 12 8 2.0141 -0.6844 1.1856 13 6 2.2180 0.0673 2.2859 14 8 1.9977 1.2624 2.2549 15 6 2.7082 -0.5585 3.5237 16 6 2.9295 0.1466 4.6554 17 16 3.4855 -0.9119 5.8777 18 6 3.3948 -2.2745 4.7678 19 6 3.7446 -3.6721 5.1010 20 6 4.2256 -4.1823 6.3913 21 6 4.4127 -5.5013 6.2216 22 8 4.0849 -5.8318 4.9632 23 6 3.6832 -4.7531 4.2771 24 7 2.9676 -1.8635 3.6126 25 1 -0.3633 0.5889 -0.8422 26 1 -0.3633 -1.0239 -0.0889 27 1 -0.3633 0.4348 0.9312 28 1 2.9362 -0.1049 -4.2556 29 1 2.7763 1.2094 4.7703 30 1 4.3958 -3.6124 7.2928 31 1 4.7661 -6.1866 6.9778 32 1 3.3643 -4.7436 3.2453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113688712.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:30 Heat of formation + Delta-G solvation = -26.035767 kcal Electronic energy + Delta-G solvation = -19989.847103 eV Core-core repulsion = 16623.504255 eV Total energy + Delta-G solvation = -3366.342847 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.64073 -40.21987 -38.72223 -35.85378 -33.66265 -33.04152 -30.98174 -30.52007 -29.25969 -26.22214 -25.37566 -23.97048 -21.93454 -21.17728 -20.13425 -19.16517 -18.81435 -17.71113 -17.08783 -16.25336 -16.19293 -15.99968 -15.47155 -15.28390 -14.46162 -14.13153 -13.98330 -13.43143 -13.18971 -12.88543 -12.67154 -12.47807 -12.35923 -12.06142 -11.74773 -11.09333 -10.97266 -10.70965 -10.66179 -10.21227 -9.93036 -9.81631 -9.69168 -9.50530 -9.25781 -9.12405 -8.71097 -8.39454 -6.26276 -4.29814 0.21674 1.03205 1.42106 1.46483 1.78378 2.63721 2.79457 3.20979 3.29529 3.35018 3.41642 3.53073 3.87140 4.27230 4.54949 4.63358 4.91860 5.06061 5.10198 5.20178 5.42695 5.45654 5.84242 5.91942 6.01593 6.16889 6.43046 6.51468 6.67084 6.79804 7.14499 7.26767 7.43018 7.50152 8.21949 8.59836 8.85268 9.32650 10.85065 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.004045 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.332785 B = 6920.633462 C = 7861.721720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 H 0.047 0.953 4 C -0.516 4.516 5 H 0.087 0.913 6 C 0.083 3.917 7 N -0.881 5.881 8 Si 0.869 3.131 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.260 1.260 12 O -0.322 6.322 13 C 0.529 3.471 14 O -0.518 6.518 15 C 0.044 3.956 16 C -0.219 4.219 17 S 0.169 5.831 18 C 0.129 3.871 19 C -0.140 4.140 20 C -0.198 4.198 21 C -0.031 4.031 22 O -0.176 6.176 23 C 0.045 3.955 24 N -0.415 5.415 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.270 0.730 29 H 0.193 0.807 30 H 0.156 0.844 31 H 0.208 0.792 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -5.901 22.383 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.126 3.874 3 H 0.065 0.935 4 C -0.553 4.553 5 H 0.105 0.895 6 C -0.122 4.122 7 N -0.517 5.517 8 Si 0.694 3.306 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.185 1.185 12 O -0.237 6.237 13 C 0.370 3.630 14 O -0.409 6.409 15 C -0.089 4.089 16 C -0.360 4.360 17 S 0.427 5.573 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.218 4.218 21 C -0.097 4.097 22 O -0.071 6.071 23 C -0.029 4.029 24 N -0.129 5.129 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.210 0.790 30 H 0.173 0.827 31 H 0.224 0.776 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.201 -5.991 22.597 23.596 hybrid contribution -0.303 1.903 -0.845 2.104 sum 2.898 -4.088 21.752 22.322 Atomic orbital electron populations 1.22239 0.97351 1.01753 0.99678 1.21106 0.91621 0.94148 0.80500 0.93504 1.20793 1.45250 0.96431 0.92813 0.89490 1.24904 0.93528 0.98574 0.95183 1.69850 1.44012 1.36208 1.01679 0.86973 0.79952 0.85862 0.77766 1.19565 1.20653 1.18456 1.86872 1.74651 1.42324 1.19815 1.19955 0.74594 0.84693 0.83737 1.90805 1.49811 1.15642 1.84608 1.19555 1.06584 0.88334 0.94465 1.26487 1.06145 1.06915 0.96474 1.83627 1.59859 0.98915 1.14872 1.24885 1.02676 0.96318 0.90937 1.19025 1.11020 0.89303 0.95174 1.22735 1.06610 0.94921 0.97567 1.23887 1.04307 0.96359 0.85169 1.83944 1.64762 1.35888 1.22466 1.24547 0.97815 0.82436 0.98088 1.67368 1.12241 1.12770 1.20538 0.91859 0.92250 0.95159 0.91969 0.78956 0.82663 0.77560 0.76249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.53 37.16 0.35 -3.15 16 2 C 0.18 4.67 2.23 -27.88 -0.06 4.61 16 3 H 0.05 1.26 4.31 -51.93 -0.22 1.04 16 4 C -0.52 -15.01 9.25 -34.44 -0.32 -15.33 16 5 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 6 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 7 N -0.88 -26.52 13.96 55.43 0.77 -25.74 16 8 Si 0.87 21.72 26.99 -169.99 -4.59 17.14 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.26 -6.33 6.82 56.52 0.39 -5.94 16 12 O -0.32 -8.03 9.78 -40.79 -0.40 -8.43 16 13 C 0.53 11.77 7.91 34.33 0.27 12.04 16 14 O -0.52 -12.08 15.92 -19.32 -0.31 -12.38 16 15 C 0.04 0.81 6.66 -84.71 -0.56 0.25 16 16 C -0.22 -3.10 10.56 29.64 0.31 -2.79 16 17 S 0.17 1.83 23.06 -107.50 -2.48 -0.65 16 18 C 0.13 1.79 7.46 -14.45 -0.11 1.68 16 19 C -0.14 -1.63 6.32 -103.25 -0.65 -2.29 16 20 C -0.20 -1.67 11.04 -37.49 -0.41 -2.09 16 21 C -0.03 -0.22 12.04 29.34 0.35 0.13 16 22 O -0.18 -1.70 10.54 6.86 0.07 -1.63 16 23 C 0.04 0.49 12.05 29.95 0.36 0.85 16 24 N -0.41 -7.27 10.56 -8.03 -0.08 -7.35 16 25 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.19 2.39 7.99 -52.49 -0.42 1.97 16 30 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.21 0.62 8.06 -52.49 -0.42 0.19 16 32 H 0.22 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 309.62 15.07 4.67 4.67 Total: -1.00 -34.00 309.62 -5.66 -39.66 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -2.75 Total: -1.49 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.56 Total: -3.79 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.69 Total: -33.10 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.63 Total: -22.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.59 Total: 17.14 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.48 Total: -0.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.00 -5.66 -39.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688712.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.626 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds