Wall clock time and date at job start Tue Mar 31 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46892 * 2 1 4 4 C 1.50701 * 109.47106 * 240.00145 * 2 1 3 5 5 H 1.08005 * 119.99608 * 274.99563 * 4 2 1 6 6 C 1.37874 * 120.00081 * 94.99717 * 4 2 1 7 7 N 1.31512 * 119.99839 * 184.91612 * 6 4 2 8 8 Si 1.86795 * 120.00027 * 4.90986 * 6 4 2 9 9 H 1.48505 * 109.47088 * 84.83425 * 8 6 4 10 10 H 1.48500 * 109.47277 * 204.83208 * 8 6 4 11 11 H 1.48501 * 109.47211 * 324.83910 * 8 6 4 12 12 O 1.45198 * 109.47074 * 119.99820 * 2 1 3 13 13 C 1.34810 * 117.00243 * 270.00334 * 12 2 1 14 14 O 1.21566 * 119.99711 * 359.97438 * 13 12 2 15 15 C 1.47108 * 120.00149 * 180.02562 * 13 12 2 16 16 C 1.35159 * 122.49173 * 180.02562 * 15 13 12 17 17 S 1.70986 * 109.19533 * 179.78647 * 16 15 13 18 18 C 1.75975 * 90.67347 * 0.29238 * 17 16 15 19 19 C 1.47871 * 125.27439 * 179.97438 * 18 17 16 20 20 C 1.46853 * 127.14440 * 359.92556 * 19 18 17 21 21 C 1.34302 * 106.01026 * 180.14209 * 20 19 18 22 22 O 1.34177 * 109.04982 * 359.64246 * 21 20 19 23 23 C 1.33999 * 110.80434 * 0.23967 * 22 21 20 24 24 N 1.29838 * 109.44772 * 359.69905 * 18 17 16 25 25 H 1.08997 * 109.47113 * 55.03546 * 1 2 3 26 26 H 1.09001 * 109.46658 * 175.03803 * 1 2 3 27 27 H 1.09002 * 109.47125 * 295.03212 * 1 2 3 28 28 H 0.96994 * 119.99843 * 179.97438 * 7 6 4 29 29 H 1.07993 * 125.40258 * 359.97438 * 16 15 13 30 30 H 1.07996 * 126.99633 * 0.04557 * 20 19 18 31 31 H 1.08001 * 125.47634 * 179.89754 * 21 20 19 32 32 H 1.07997 * 125.78732 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1356 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3581 7 7 2.7059 -0.6132 -3.4622 8 14 2.3133 1.8790 -2.3175 9 1 3.5989 2.3950 -1.7823 10 1 2.1055 2.3990 -3.6929 11 1 1.1984 2.3273 -1.4450 12 8 2.0141 -0.6844 1.1856 13 6 2.2180 0.0673 2.2859 14 8 1.9977 1.2624 2.2549 15 6 2.7082 -0.5585 3.5237 16 6 2.9295 0.1466 4.6554 17 16 3.4855 -0.9119 5.8777 18 6 3.3948 -2.2745 4.7678 19 6 3.7446 -3.6721 5.1010 20 6 4.2256 -4.1823 6.3913 21 6 4.4127 -5.5013 6.2216 22 8 4.0849 -5.8318 4.9632 23 6 3.6832 -4.7531 4.2771 24 7 2.9676 -1.8635 3.6126 25 1 -0.3633 0.5889 -0.8422 26 1 -0.3633 -1.0239 -0.0889 27 1 -0.3633 0.4348 0.9312 28 1 2.9362 -0.1049 -4.2556 29 1 2.7763 1.2094 4.7703 30 1 4.3958 -3.6124 7.2928 31 1 4.7661 -6.1866 6.9778 32 1 3.3643 -4.7436 3.2453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113688712.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:30 Heat of formation + Delta-G solvation = -48.958193 kcal Electronic energy + Delta-G solvation = -19990.841094 eV Core-core repulsion = 16623.504255 eV Total energy + Delta-G solvation = -3367.336838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.35816 -41.72536 -40.18409 -37.69226 -35.20774 -34.49876 -32.66186 -31.78203 -30.14999 -27.59471 -27.35982 -25.24485 -22.86442 -22.60918 -21.52071 -20.45731 -19.98582 -19.16353 -18.67254 -17.86741 -17.43697 -17.15942 -16.92395 -16.46846 -16.00632 -15.47536 -15.15257 -14.84149 -14.57368 -14.38244 -14.21537 -13.81291 -13.65193 -13.25623 -13.19504 -13.02606 -12.92746 -12.62740 -12.03911 -11.76583 -11.64187 -11.48396 -11.24777 -10.98688 -10.90817 -10.64380 -10.02556 -9.31583 -8.49576 -6.60099 -0.85956 0.03827 0.30160 0.31982 1.01958 1.23909 1.26813 1.37995 1.60636 1.87923 2.11757 2.14425 2.17893 2.74966 2.92234 3.62948 3.83729 3.97054 4.02414 4.12975 4.15863 4.49114 4.53106 4.58412 4.70585 4.81527 4.86827 5.10544 5.26297 5.31674 5.42089 5.48676 6.03299 6.09754 6.33259 6.47951 6.80551 7.07207 8.66065 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.004045 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.332785 B = 6920.633462 C = 7861.721720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.180 3.820 3 H 0.041 0.959 4 C -0.533 4.533 5 H 0.044 0.956 6 C 0.036 3.964 7 N -0.922 5.922 8 Si 0.930 3.070 9 H -0.269 1.269 10 H -0.262 1.262 11 H -0.248 1.248 12 O -0.343 6.343 13 C 0.525 3.475 14 O -0.536 6.536 15 C 0.003 3.997 16 C -0.216 4.216 17 S 0.293 5.707 18 C 0.111 3.889 19 C -0.162 4.162 20 C -0.204 4.204 21 C -0.017 4.017 22 O -0.183 6.183 23 C 0.028 3.972 24 N -0.461 5.461 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.277 0.723 29 H 0.210 0.790 30 H 0.183 0.817 31 H 0.253 0.747 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 -5.027 25.898 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.127 3.873 3 H 0.058 0.942 4 C -0.570 4.570 5 H 0.063 0.937 6 C -0.165 4.165 7 N -0.559 5.559 8 Si 0.752 3.248 9 H -0.194 1.194 10 H -0.187 1.187 11 H -0.171 1.171 12 O -0.258 6.258 13 C 0.368 3.632 14 O -0.428 6.428 15 C -0.130 4.130 16 C -0.358 4.358 17 S 0.554 5.446 18 C -0.166 4.166 19 C -0.168 4.168 20 C -0.224 4.224 21 C -0.082 4.082 22 O -0.078 6.078 23 C -0.046 4.046 24 N -0.176 5.176 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.227 0.773 30 H 0.200 0.800 31 H 0.268 0.732 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.717 -5.136 26.142 26.900 hybrid contribution -0.371 1.477 -1.705 2.286 sum 3.346 -3.659 24.437 24.935 Atomic orbital electron populations 1.22143 0.95112 1.02216 1.00902 1.20948 0.93241 0.93088 0.80064 0.94154 1.20887 1.46291 0.94803 0.95044 0.93734 1.25686 0.92832 1.03594 0.94437 1.69957 1.45053 1.38398 1.02523 0.86002 0.80297 0.79609 0.78886 1.19418 1.18681 1.17136 1.86821 1.75462 1.42962 1.20572 1.20578 0.73904 0.84610 0.84070 1.90759 1.50873 1.16171 1.85009 1.19154 1.10563 0.89437 0.93869 1.26899 1.03911 1.08413 0.96549 1.83151 1.56295 0.94612 1.10580 1.25288 1.01771 0.98341 0.91198 1.19328 1.11923 0.88498 0.97033 1.23043 1.06822 0.95524 0.97034 1.24818 1.02022 0.96919 0.84470 1.83955 1.64704 1.35479 1.23686 1.24502 0.98637 0.83130 0.98290 1.67286 1.14277 1.12862 1.23190 0.91094 0.92174 0.93379 0.91314 0.77321 0.79982 0.73152 0.77196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.74 9.53 71.98 0.69 -6.06 16 2 C 0.18 9.62 2.23 29.85 0.07 9.69 16 3 H 0.04 2.19 4.31 -2.39 -0.01 2.18 16 4 C -0.53 -32.45 9.25 25.60 0.24 -32.21 16 5 H 0.04 3.00 8.06 -2.91 -0.02 2.97 16 6 C 0.04 2.11 5.47 84.65 0.46 2.58 16 7 N -0.92 -57.09 13.96 21.45 0.30 -56.79 16 8 Si 0.93 44.99 26.99 68.60 1.85 46.84 16 9 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 10 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.25 -11.42 6.82 99.48 0.68 -10.74 16 12 O -0.34 -17.85 9.78 -57.22 -0.56 -18.40 16 13 C 0.52 23.91 7.91 70.15 0.55 24.47 16 14 O -0.54 -25.14 15.92 19.62 0.31 -24.82 16 15 C 0.00 0.12 6.66 40.53 0.27 0.39 16 16 C -0.22 -5.70 10.56 67.11 0.71 -4.99 16 17 S 0.29 5.38 23.06 -56.49 -1.30 4.08 16 18 C 0.11 2.95 7.46 87.54 0.65 3.60 16 19 C -0.16 -3.62 6.32 -18.98 -0.12 -3.74 16 20 C -0.20 -2.80 11.04 23.63 0.26 -2.54 16 21 C -0.02 -0.19 12.04 66.92 0.81 0.62 16 22 O -0.18 -3.34 10.54 1.63 0.02 -3.32 16 23 C 0.03 0.63 12.05 67.31 0.81 1.45 16 24 N -0.46 -16.49 10.56 -179.32 -1.89 -18.39 16 25 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 26 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.21 4.66 7.99 -2.91 -0.02 4.64 16 30 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.25 0.26 8.06 -2.91 -0.02 0.24 16 32 H 0.21 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -77.87 309.62 5.26 -72.61 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.14 Total: 4.95 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.40 Total: -6.75 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -1.60 Total: -75.18 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -0.23 Total: -46.55 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.85 Total: 46.84 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -1.30 Total: 4.08 kcal Total: -77.87 5.26 -72.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688712.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.653 kcal (2) G-P(sol) polarization free energy of solvation -77.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds